Wall clock time and date at job start Tue Mar 31 2020 13:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46751 * 2 1 4 4 N 1.33698 * 126.27341 * 269.97343 * 3 2 1 5 5 C 1.30621 * 108.99554 * 180.02562 * 4 3 2 6 6 O 1.33670 * 109.15442 * 359.75276 * 5 4 3 7 7 C 1.35345 * 107.68163 * 0.40060 * 6 5 4 8 8 C 1.46723 * 126.64248 * 179.87440 * 7 6 5 9 9 O 1.21682 * 120.00183 * 171.92005 * 8 7 6 10 10 N 1.34775 * 119.99963 * 351.92286 * 8 7 6 11 11 C 1.47134 * 120.18452 * 353.15377 * 10 8 7 12 12 C 1.53622 * 107.51937 * 107.86235 * 11 10 8 13 13 C 1.53488 * 108.46309 * 69.77699 * 12 11 10 14 14 C 1.52475 * 109.15126 * 245.78501 * 13 12 11 15 15 C 1.53121 * 109.66911 * 43.93036 * 14 13 12 16 16 C 1.53433 * 109.34970 * 77.03353 * 15 14 13 17 17 H 1.09006 * 109.63279 * 47.55142 * 16 15 14 18 18 N 1.46499 * 109.63447 * 167.95020 * 16 15 14 19 19 C 1.36942 * 119.99981 * 204.99961 * 18 16 15 20 20 H 1.08004 * 119.99496 * 0.02562 * 19 18 16 21 21 C 1.38807 * 119.99750 * 179.71807 * 19 18 16 22 22 N 1.31619 * 119.99789 * 180.27645 * 21 19 18 23 23 Si 1.86794 * 120.00275 * 0.28541 * 21 19 18 24 24 H 1.48494 * 109.47541 * 89.99258 * 23 21 19 25 25 H 1.48500 * 109.47091 * 209.99583 * 23 21 19 26 26 H 1.48507 * 109.46926 * 329.99008 * 23 21 19 27 27 C 1.46059 * 120.18631 * 173.16273 * 10 8 7 28 28 H 1.08996 * 109.46898 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47341 * 299.99886 * 1 2 3 30 30 H 1.09006 * 109.47319 * 60.00072 * 1 2 3 31 31 H 1.09001 * 109.47341 * 240.00114 * 2 1 3 32 32 H 1.08992 * 109.47417 * 119.99769 * 2 1 3 33 33 H 1.08000 * 125.42480 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.85062 * 348.35976 * 11 10 8 35 35 H 1.09004 * 109.85157 * 227.36364 * 11 10 8 36 36 H 1.09007 * 109.63305 * 310.08644 * 12 11 10 37 37 H 1.08995 * 109.63845 * 189.47185 * 12 11 10 38 38 H 1.08999 * 109.52443 * 125.89144 * 13 12 11 39 39 H 1.08992 * 109.52659 * 5.68841 * 13 12 11 40 40 H 1.08997 * 109.43801 * 283.86911 * 14 13 12 41 41 H 1.08991 * 109.43831 * 163.98691 * 14 13 12 42 42 H 1.08999 * 109.49065 * 317.07216 * 15 14 13 43 43 H 1.08996 * 109.51558 * 197.01170 * 15 14 13 44 44 H 0.96994 * 119.99815 * 25.00102 * 18 16 15 45 45 H 0.96999 * 120.00430 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.36013 * 172.84728 * 27 10 8 47 47 H 1.08994 * 109.36197 * 53.24836 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2963 2.1665 -1.0779 5 6 2.7124 3.3423 -0.6899 6 8 2.7216 3.3855 0.6460 7 6 2.3012 2.1814 1.0992 8 6 2.1568 1.7753 2.5017 9 8 1.6296 0.7136 2.7765 10 7 2.6080 2.5782 3.4856 11 6 3.3784 3.7883 3.1582 12 6 2.4754 5.0001 3.4339 13 6 2.2829 5.1276 4.9513 14 6 0.8194 4.8705 5.2932 15 6 0.3127 3.6563 4.5098 16 6 0.8328 2.3724 5.1695 17 1 0.6650 2.4197 6.2455 18 7 0.1310 1.2135 4.6122 19 6 0.0232 0.0613 5.3443 20 1 0.4552 0.0071 6.3327 21 6 -0.6469 -1.0348 4.8186 22 7 -0.7552 -2.1405 5.5244 23 14 -1.3945 -0.9409 3.1094 24 1 -0.3938 -1.3848 2.1062 25 1 -2.5877 -1.8224 3.0419 26 1 -1.7967 0.4594 2.8214 27 6 2.3352 2.2520 4.8829 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 2.9987 4.1523 -1.3444 34 1 3.6645 3.7716 2.1065 35 1 4.2692 3.8406 3.7841 36 1 1.5082 4.8532 2.9530 37 1 2.9466 5.9036 3.0472 38 1 2.5603 6.1322 5.2706 39 1 2.9099 4.3961 5.4608 40 1 0.2260 5.7459 5.0294 41 1 0.7250 4.6777 6.3618 42 1 0.6740 3.7096 3.4828 43 1 -0.7773 3.6506 4.5120 44 1 -0.2572 1.2624 3.7247 45 1 -1.2231 -2.9066 5.1570 46 1 2.8823 2.9395 5.5279 47 1 2.6612 1.2320 5.0861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088377203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:40 Heat of formation + Delta-G solvation = 13.900929 kcal Electronic energy + Delta-G solvation = -30334.911770 eV Core-core repulsion = 26520.431539 eV Total energy + Delta-G solvation = -3814.480231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.48904 -41.39847 -38.82505 -36.91917 -36.43236 -34.97083 -34.06789 -33.77136 -31.61401 -30.95008 -28.53452 -27.94706 -25.87240 -25.07667 -24.47984 -23.81306 -22.83792 -21.64909 -21.20666 -20.22548 -19.42086 -18.42654 -17.86637 -17.58669 -17.13617 -16.77381 -16.66473 -16.23484 -15.92526 -15.58978 -15.19865 -15.12477 -14.79469 -14.72300 -14.51087 -14.22632 -13.89306 -13.70014 -13.54801 -13.18248 -13.07595 -12.78685 -12.64278 -12.57530 -12.26576 -12.18272 -12.07235 -11.90143 -11.82447 -11.76348 -11.71987 -11.48335 -11.18116 -11.03030 -10.92095 -10.72155 -10.06213 -9.66646 -8.94577 -7.92245 -5.17921 -0.14510 1.33725 1.39977 1.46543 1.47738 1.52079 2.13135 2.19376 2.60047 3.10811 3.41465 3.50924 3.62506 3.69170 3.93625 3.99288 4.11747 4.18600 4.21964 4.23143 4.29121 4.30990 4.38527 4.47478 4.52160 4.60503 4.62342 4.75697 4.83285 4.83372 4.88440 4.96541 5.03358 5.10405 5.11912 5.15874 5.24113 5.33246 5.40875 5.42423 5.51071 5.63099 5.73721 5.83083 6.30988 6.35098 6.59877 7.18354 7.24425 8.02808 8.17758 9.29314 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.008149 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.882436 B = 3435.248972 C = 5540.636480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C 0.064 3.936 4 N -0.519 5.519 5 C 0.215 3.785 6 O -0.177 6.177 7 C -0.116 4.116 8 C 0.575 3.425 9 O -0.503 6.503 10 N -0.591 5.591 11 C 0.093 3.907 12 C -0.135 4.135 13 C -0.125 4.125 14 C -0.108 4.108 15 C -0.130 4.130 16 C 0.159 3.841 17 H 0.057 0.943 18 N -0.733 5.733 19 C -0.196 4.196 20 H 0.056 0.944 21 C -0.065 4.065 22 N -0.992 5.992 23 Si 0.953 3.047 24 H -0.255 1.255 25 H -0.318 1.318 26 H -0.281 1.281 27 C 0.104 3.896 28 H 0.061 0.939 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.311 0.689 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.360 0.640 45 H 0.249 0.751 46 H 0.117 0.883 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.780 21.918 -11.377 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.059 4.059 4 N -0.247 5.247 5 C -0.009 4.009 6 O -0.064 6.064 7 C -0.171 4.171 8 C 0.361 3.639 9 O -0.379 6.379 10 N -0.324 5.324 11 C -0.028 4.028 12 C -0.173 4.173 13 C -0.162 4.162 14 C -0.146 4.146 15 C -0.168 4.168 16 C 0.050 3.950 17 H 0.075 0.925 18 N -0.375 5.375 19 C -0.327 4.327 20 H 0.074 0.926 21 C -0.255 4.255 22 N -0.645 5.645 23 Si 0.785 3.215 24 H -0.180 1.180 25 H -0.247 1.247 26 H -0.207 1.207 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.326 0.674 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.193 0.807 45 H 0.058 0.942 46 H 0.135 0.865 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.494 21.099 -11.621 26.689 hybrid contribution -0.802 -0.709 -0.089 1.074 sum 10.692 20.389 -11.710 25.830 Atomic orbital electron populations 1.21766 0.94695 1.02022 1.01152 1.19972 0.96101 0.88897 1.03562 1.21951 0.98374 0.98104 0.87447 1.70319 1.18597 1.04708 1.31120 1.29657 0.93917 0.97441 0.79902 1.84684 1.64662 1.32477 1.24562 1.22894 1.12534 0.85918 0.95802 1.16959 0.80078 0.84663 0.82204 1.91075 1.42882 1.22637 1.81265 1.47872 1.53767 1.25141 1.05602 1.22619 0.94371 0.82751 1.03031 1.22362 1.00052 0.97982 0.96900 1.21907 0.95775 1.02732 0.95820 1.21422 0.97305 0.96156 0.99691 1.22182 0.99198 0.94501 1.00920 1.21109 0.90665 0.86495 0.96759 0.92529 1.42748 1.66339 1.10966 1.17446 1.18932 1.25900 0.90277 0.97595 0.92574 1.25222 1.03108 0.95788 1.01337 1.69889 1.50885 1.04390 1.39338 0.85572 0.77006 0.75848 0.83111 1.18024 1.24690 1.20742 1.22413 0.98521 1.00237 0.80906 0.92011 0.94962 0.91104 0.88689 0.90995 0.67450 0.88180 0.88563 0.92113 0.88367 0.89755 0.91157 0.91068 0.91808 0.91013 0.94292 0.80683 0.94201 0.86528 0.94644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 8.55 71.98 0.62 -4.26 16 2 C -0.05 -1.60 5.85 29.85 0.17 -1.43 16 3 C 0.06 1.98 6.41 41.83 0.27 2.25 16 4 N -0.52 -12.94 11.26 -303.11 -3.41 -16.35 16 5 C 0.22 3.33 13.21 130.42 1.72 5.05 16 6 O -0.18 -3.57 7.48 -7.15 -0.05 -3.63 16 7 C -0.12 -3.48 6.75 24.05 0.16 -3.32 16 8 C 0.58 20.62 6.66 86.46 0.58 21.19 16 9 O -0.50 -23.13 10.75 -4.29 -0.05 -23.17 16 10 N -0.59 -17.17 1.72 -823.95 -1.42 -18.58 16 11 C 0.09 1.71 5.51 86.47 0.48 2.19 16 12 C -0.14 -2.07 5.60 30.97 0.17 -1.90 16 13 C -0.13 -1.95 5.48 30.58 0.17 -1.78 16 14 C -0.11 -2.25 5.67 30.46 0.17 -2.07 16 15 C -0.13 -3.93 4.92 30.78 0.15 -3.78 16 16 C 0.16 6.01 2.68 45.28 0.12 6.13 16 17 H 0.06 2.21 7.83 -2.38 -0.02 2.20 16 18 N -0.73 -36.54 2.88 -321.58 -0.92 -37.47 16 19 C -0.20 -11.82 10.36 84.03 0.87 -10.95 16 20 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 21 C -0.06 -4.13 5.50 84.86 0.47 -3.67 16 22 N -0.99 -68.13 13.97 21.65 0.30 -67.83 16 23 Si 0.95 52.35 24.76 68.60 1.70 54.05 16 24 H -0.26 -13.42 5.49 99.48 0.55 -12.88 16 25 H -0.32 -17.79 7.11 99.48 0.71 -17.08 16 26 H -0.28 -14.76 6.51 99.48 0.65 -14.11 16 27 C 0.10 3.39 4.91 86.60 0.43 3.81 16 28 H 0.06 2.15 7.56 -2.39 -0.02 2.14 16 29 H 0.03 1.30 6.23 -2.39 -0.01 1.28 16 30 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.07 2.84 6.66 -2.39 -0.02 2.83 16 33 H 0.31 0.41 8.06 -2.91 -0.02 0.38 16 34 H 0.10 1.74 4.49 -5.59 -0.03 1.72 16 35 H 0.10 1.39 7.97 -2.38 -0.02 1.37 16 36 H 0.06 1.21 5.45 -2.38 -0.01 1.20 16 37 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.15 4.49 -2.39 -0.01 1.13 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 1.35 7.85 -2.39 -0.02 1.33 16 42 H 0.07 2.18 3.68 -2.39 -0.01 2.17 16 43 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.36 18.55 4.43 -92.71 -0.41 18.13 16 45 H 0.25 16.54 8.31 -92.71 -0.77 15.77 16 46 H 0.12 2.84 5.07 -2.39 -0.01 2.83 16 47 H 0.04 1.47 8.04 -2.39 -0.02 1.45 16 Total: -1.00 -83.80 343.03 3.05 -80.75 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.36 Total: 24.78 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 6.55 Total: 7.46 kcal Atomic # 7 Polarization: -134.78 SS G_CDS: -5.45 Total: -140.23 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.10 Total: -26.80 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 1.70 Total: 54.05 kcal Total: -83.80 3.05 -80.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088377203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.648 kcal (2) G-P(sol) polarization free energy of solvation -83.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds