Wall clock time and date at job start Tue Mar 31 2020 13:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.46914 * 2 1 4 4 N 1.29939 * 125.37926 * 90.00351 * 3 2 1 5 5 C 1.36066 * 108.47994 * 180.02562 * 4 3 2 6 6 C 1.47416 * 126.45135 * 180.02562 * 5 4 3 7 7 O 1.21605 * 120.00065 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99621 * 0.02562 * 6 5 4 9 9 C 1.46508 * 119.99804 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46903 * 179.97438 * 9 8 6 11 11 H 1.09003 * 110.91371 * 51.09733 * 10 9 8 12 12 C 1.54908 * 111.00681 * 287.19469 * 10 9 8 13 13 N 1.47420 * 104.83146 * 204.91923 * 12 10 9 14 14 C 1.36938 * 125.65007 * 204.16368 * 13 12 10 15 15 H 1.08001 * 119.99751 * 354.83445 * 14 13 12 16 16 C 1.38803 * 120.00306 * 174.83364 * 14 13 12 17 17 N 1.31618 * 120.00128 * 7.06528 * 16 14 13 18 18 Si 1.86800 * 120.00281 * 187.06176 * 16 14 13 19 19 H 1.48498 * 109.47137 * 94.98746 * 18 16 14 20 20 H 1.48496 * 109.47607 * 214.98924 * 18 16 14 21 21 H 1.48504 * 109.47031 * 334.99199 * 18 16 14 22 22 C 1.47022 * 108.70668 * 24.12732 * 13 12 10 23 23 C 1.54327 * 107.26914 * 358.93987 * 22 13 12 24 24 H 1.09002 * 110.71793 * 96.34542 * 23 22 13 25 25 C 1.53002 * 110.72129 * 219.44390 * 23 22 13 26 26 C 1.36095 * 107.09874 * 0.26071 * 5 4 3 27 27 C 1.50707 * 126.52045 * 179.73867 * 26 5 4 28 28 O 1.34057 * 125.37931 * 270.04041 * 3 2 1 29 29 H 1.08997 * 109.47058 * 59.99803 * 1 2 3 30 30 H 1.08994 * 109.46955 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47011 * 299.99749 * 1 2 3 32 32 H 1.08999 * 109.47011 * 240.00251 * 2 1 3 33 33 H 1.08997 * 109.47058 * 120.00197 * 2 1 3 34 34 H 0.96996 * 120.00667 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47188 * 59.99507 * 9 8 6 36 36 H 1.08997 * 109.46697 * 299.99784 * 9 8 6 37 37 H 1.08998 * 110.36563 * 86.07501 * 12 10 9 38 38 H 1.09002 * 110.36380 * 323.75883 * 12 10 9 39 39 H 0.97001 * 120.00287 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.88404 * 239.52618 * 22 13 12 41 41 H 1.09003 * 110.01411 * 118.42974 * 22 13 12 42 42 H 1.09000 * 109.46780 * 58.54591 * 25 23 22 43 43 H 1.09004 * 109.47114 * 178.54806 * 25 23 22 44 44 H 1.09002 * 109.46934 * 298.54282 * 25 23 22 45 45 H 1.08997 * 109.46694 * 90.00412 * 27 26 5 46 46 H 1.09005 * 109.46800 * 210.00018 * 27 26 5 47 47 H 1.09000 * 109.47051 * 329.99958 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2831 2.1301 1.0594 5 6 2.7165 3.3578 0.6639 6 6 3.1111 4.4727 1.5439 7 8 3.4821 5.5257 1.0619 8 7 3.0605 4.3250 2.8826 9 6 3.4521 5.4333 3.7571 10 6 3.3027 5.0067 5.2188 11 1 3.8086 4.0585 5.4011 12 6 1.8097 4.9263 5.6240 13 7 1.8042 5.1223 7.0851 14 6 0.8306 4.6885 7.9449 15 1 -0.0652 4.2262 7.5573 16 6 0.9950 4.8430 9.3145 17 7 2.0171 5.5282 9.7815 18 14 -0.2344 4.0783 10.4950 19 1 0.2665 2.7537 10.9419 20 1 -0.4071 4.9655 11.6732 21 1 -1.5399 3.9078 9.8081 22 6 3.0174 5.8598 7.4666 23 6 3.8264 6.1096 6.1763 24 1 3.6180 7.1020 5.7764 25 6 5.3245 5.9358 6.4344 26 6 2.7121 3.3643 -0.6970 27 6 3.1088 4.5120 -1.5896 28 8 2.2903 2.1529 -1.0930 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.7642 3.4852 3.2671 35 1 2.8114 6.2934 3.5627 36 1 4.4901 5.7016 3.5608 37 1 1.4000 3.9485 5.3708 38 1 1.2404 5.7157 5.1332 39 1 2.1318 5.6365 10.7386 40 1 3.6076 5.2667 8.1651 41 1 2.7471 6.8113 7.9246 42 1 5.5148 4.9285 6.8049 43 1 5.8736 6.0911 5.5057 44 1 5.6522 6.6639 7.1763 45 1 4.1745 4.4496 -1.8096 46 1 2.5422 4.4616 -2.5195 47 1 2.8964 5.4547 -1.0854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093048515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:53 Heat of formation + Delta-G solvation = -8.560032 kcal Electronic energy + Delta-G solvation = -27095.423475 eV Core-core repulsion = 23279.969264 eV Total energy + Delta-G solvation = -3815.454211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.66363 -39.55838 -37.95067 -35.32708 -34.64467 -34.35070 -32.88996 -31.87346 -30.70378 -29.48202 -27.40865 -25.98677 -25.31538 -24.47981 -23.26210 -22.46829 -21.35507 -20.48248 -19.92951 -19.25628 -17.95818 -17.20878 -16.73363 -16.06522 -15.94264 -15.27240 -14.98802 -14.85001 -14.64112 -14.23202 -13.89609 -13.68905 -13.55950 -13.38556 -13.17561 -12.91297 -12.84966 -12.69277 -12.49931 -12.12445 -11.83925 -11.67230 -11.59504 -11.40614 -11.34468 -11.19396 -10.96193 -10.78475 -10.76250 -10.27757 -10.05291 -9.95629 -9.89329 -9.68369 -9.54498 -9.11270 -8.81055 -8.55140 -6.79451 -5.69731 -3.01721 0.90252 1.82772 2.21717 3.14023 3.26334 3.41735 3.46967 3.48949 3.63854 4.34538 4.51682 4.60157 4.66591 4.73262 4.91024 5.00338 5.12903 5.19745 5.24013 5.24674 5.37244 5.38284 5.50968 5.55763 5.58713 5.63527 5.73168 5.79243 5.79862 5.85857 5.94317 6.05914 6.13674 6.22489 6.32170 6.47463 6.51675 6.62890 6.65967 6.79169 6.98421 7.23837 7.59520 7.62572 7.67982 7.86580 8.19078 8.28910 9.24844 9.85397 10.52271 11.42335 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.002950 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.337114 B = 9488.190671 C =11136.551272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.025 4.025 3 C 0.194 3.806 4 N -0.454 5.454 5 C -0.073 4.073 6 C 0.600 3.400 7 O -0.541 6.541 8 N -0.704 5.704 9 C 0.132 3.868 10 C -0.113 4.113 11 H 0.081 0.919 12 C 0.142 3.858 13 N -0.606 5.606 14 C -0.228 4.228 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.920 5.920 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.183 3.817 23 C -0.110 4.110 24 H 0.068 0.932 25 C -0.134 4.134 26 C 0.036 3.964 27 C -0.075 4.075 28 O -0.198 6.198 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.410 0.590 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.050 0.950 41 H 0.040 0.960 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 -7.778 -22.661 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.063 4.063 3 C -0.015 4.015 4 N -0.183 5.183 5 C -0.193 4.193 6 C 0.386 3.614 7 O -0.420 6.420 8 N -0.354 5.354 9 C 0.009 3.991 10 C -0.132 4.132 11 H 0.099 0.901 12 C 0.015 3.985 13 N -0.332 5.332 14 C -0.357 4.357 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.058 3.942 23 C -0.130 4.130 24 H 0.086 0.914 25 C -0.192 4.192 26 C -0.020 4.020 27 C -0.131 4.131 28 O -0.085 6.085 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.246 0.754 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.036 0.964 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.251 -7.219 -22.110 23.484 hybrid contribution -0.721 -0.626 0.281 0.995 sum 2.530 -7.845 -21.828 23.333 Atomic orbital electron populations 1.21804 0.92875 1.03156 1.03167 1.20117 0.97026 0.83818 1.05385 1.26246 1.00172 0.96921 0.78208 1.70759 1.15130 1.02550 1.29892 1.21550 1.10916 0.94539 0.92300 1.16680 0.77757 0.85002 0.82009 1.90764 1.48571 1.27302 1.75326 1.45886 1.66197 1.18235 1.05125 1.21475 1.00307 0.88751 0.88563 1.22679 0.99123 0.99816 0.91615 0.90068 1.21588 0.92306 0.97919 0.86655 1.44461 1.22904 1.65418 1.00434 1.19063 0.97090 1.32603 0.86902 0.90490 1.24809 0.98304 1.00544 0.96716 1.69977 1.30818 1.43715 1.12205 0.86132 0.80287 0.78728 0.80851 1.21645 1.21804 1.20663 1.21222 0.86284 0.96386 0.90298 1.22433 0.95395 0.97143 0.98001 0.91393 1.21694 0.95310 1.01780 1.00382 1.23729 0.98143 0.85585 0.94559 1.20590 1.02477 0.92409 0.97644 1.84314 1.64064 1.22139 1.38023 0.92208 0.90728 0.91425 0.88825 0.87274 0.75395 0.91139 0.91375 0.94462 0.96405 0.93798 0.93179 0.94228 0.92777 0.93684 0.92692 0.89082 0.90253 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.90 37.16 0.37 -0.55 16 2 C -0.03 -0.17 6.56 -27.88 -0.18 -0.35 16 3 C 0.19 2.08 7.56 -13.08 -0.10 1.98 16 4 N -0.45 -6.01 11.06 -7.65 -0.08 -6.10 16 5 C -0.07 -1.01 6.99 -83.02 -0.58 -1.59 16 6 C 0.60 9.13 7.81 -12.52 -0.10 9.03 16 7 O -0.54 -9.00 14.81 5.27 0.08 -8.92 16 8 N -0.70 -10.38 5.50 -61.38 -0.34 -10.72 16 9 C 0.13 2.01 5.14 -4.04 -0.02 1.99 16 10 C -0.11 -1.94 2.49 -88.47 -0.22 -2.16 16 11 H 0.08 1.40 8.04 -51.93 -0.42 0.99 16 12 C 0.14 2.95 6.65 -2.53 -0.02 2.93 16 13 N -0.61 -15.62 3.39 -170.08 -0.58 -16.20 16 14 C -0.23 -6.44 10.26 -15.06 -0.15 -6.60 16 15 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 16 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 17 N -0.92 -27.18 10.36 55.49 0.57 -26.60 16 18 Si 0.91 22.27 29.56 -169.99 -5.02 17.25 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.18 4.43 4.98 -3.06 -0.02 4.42 16 23 C -0.11 -2.03 3.01 -88.78 -0.27 -2.29 16 24 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 25 C -0.13 -2.12 9.13 37.16 0.34 -1.78 16 26 C 0.04 0.43 7.44 -35.07 -0.26 0.17 16 27 C -0.07 -0.66 9.87 36.01 0.36 -0.30 16 28 O -0.20 -2.19 10.73 6.50 0.07 -2.12 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.41 5.88 8.20 -40.82 -0.33 5.55 16 35 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.05 1.34 6.98 -51.93 -0.36 0.98 16 41 H 0.04 1.07 7.61 -51.93 -0.40 0.68 16 42 H 0.05 0.88 8.13 -51.93 -0.42 0.45 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.11 1.15 6.49 -51.93 -0.34 0.81 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -33.12 385.06 -8.16 -41.28 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.71 Total: 1.75 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -0.95 Total: 4.57 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.42 Total: -59.62 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.15 Total: -11.04 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.12 -8.16 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093048515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.716 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds