Wall clock time and date at job start Tue Mar 31 2020 13:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47376 * 2 1 4 4 C 1.50702 * 109.47557 * 179.97438 * 3 2 1 5 5 C 1.35313 * 126.66857 * 90.25524 * 4 3 2 6 6 C 1.42270 * 103.92305 * 180.11412 * 5 4 3 7 7 C 1.48330 * 126.93951 * 179.91033 * 6 5 4 8 8 O 1.21492 * 119.99847 * 359.71062 * 7 6 5 9 9 N 1.34777 * 120.00142 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99944 * 179.72342 * 9 7 6 11 11 C 1.53003 * 109.46826 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.88544 * 51.12726 * 11 10 9 13 13 C 1.54907 * 111.00628 * 287.19776 * 11 10 9 14 14 N 1.47427 * 104.82976 * 204.91734 * 13 11 10 15 15 C 1.36937 * 125.64252 * 204.14825 * 14 13 11 16 16 H 1.07994 * 120.00245 * 354.85003 * 15 14 13 17 17 C 1.38821 * 119.99413 * 174.84877 * 15 14 13 18 18 N 1.31617 * 120.00150 * 7.06325 * 17 15 14 19 19 Si 1.86800 * 119.99694 * 187.06273 * 17 15 14 20 20 H 1.48499 * 109.47180 * 94.98527 * 19 17 15 21 21 H 1.48497 * 109.47099 * 214.98721 * 19 17 15 22 22 H 1.48503 * 109.47190 * 334.98479 * 19 17 15 23 23 C 1.47019 * 108.70322 * 24.12881 * 14 13 11 24 24 C 1.54316 * 107.27414 * 358.93962 * 23 14 13 25 25 H 1.09010 * 110.87235 * 96.23748 * 24 23 14 26 26 C 1.52997 * 110.72233 * 219.44144 * 24 23 14 27 27 N 1.30988 * 106.12279 * 359.65047 * 6 5 4 28 28 O 1.20907 * 111.43602 * 0.22247 * 27 6 5 29 29 H 1.09002 * 109.46862 * 60.00371 * 1 2 3 30 30 H 1.08994 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47046 * 300.00510 * 1 2 3 32 32 H 1.09003 * 109.47543 * 239.99486 * 2 1 3 33 33 H 1.09002 * 109.46862 * 119.99629 * 2 1 3 34 34 H 1.09000 * 109.47449 * 59.99737 * 3 2 1 35 35 H 1.09002 * 109.46822 * 299.99654 * 3 2 1 36 36 H 1.08005 * 128.03957 * 0.02562 * 5 4 3 37 37 H 0.96999 * 119.99686 * 359.72766 * 9 7 6 38 38 H 1.08992 * 109.47013 * 300.00106 * 10 9 7 39 39 H 1.09002 * 109.46759 * 60.00420 * 10 9 7 40 40 H 1.08999 * 110.36415 * 323.75688 * 13 11 10 41 41 H 1.09006 * 110.36443 * 86.07967 * 13 11 10 42 42 H 0.96994 * 119.99990 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.87967 * 239.51867 * 23 14 13 44 44 H 1.09003 * 110.01054 * 118.42932 * 23 14 13 45 45 H 1.09004 * 109.47279 * 173.52058 * 26 24 23 46 46 H 1.08995 * 109.47327 * 293.52558 * 26 24 23 47 47 H 1.09004 * 109.46812 * 53.52440 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.3556 1.4472 -1.0844 6 6 5.6674 1.4421 -0.5338 7 6 6.9482 1.4424 -1.2819 8 8 6.9420 1.4420 -2.4968 9 7 8.1188 1.4376 -0.6140 10 6 9.3838 1.4318 -1.3530 11 6 10.5518 1.4279 -0.3647 12 1 10.4323 0.6362 0.3749 13 6 10.7051 2.8093 0.3192 14 7 12.1215 2.8753 0.7230 15 6 12.6281 3.6488 1.7330 16 1 11.9864 4.3426 2.2557 17 6 13.9666 3.5411 2.0851 18 7 14.7800 2.8015 1.3614 19 14 14.6133 4.4459 3.5859 20 1 14.5976 3.5345 4.7582 21 1 16.0041 4.8988 3.3297 22 1 13.7523 5.6237 3.8630 23 6 12.8997 1.9728 -0.1380 24 6 11.9079 1.2953 -1.1069 25 1 11.8778 1.8203 -2.0617 26 6 12.2713 -0.1766 -1.3119 27 7 5.5158 1.4429 0.7673 28 8 4.3468 1.4431 1.0760 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9562 -0.8900 36 1 4.0712 1.4520 -2.1263 37 1 8.1238 1.4381 0.3560 38 1 9.4344 0.5413 -1.9795 39 1 9.4422 2.3212 -1.9804 40 1 10.4736 3.6088 -0.3847 41 1 10.0578 2.8736 1.1939 42 1 15.7151 2.7259 1.6076 43 1 13.3977 1.2180 0.4705 44 1 13.6393 2.5411 -0.7021 45 1 11.4965 -0.6630 -1.9046 46 1 13.2255 -0.2460 -1.8340 47 1 12.3506 -0.6696 -0.3429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093095160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:49 Heat of formation + Delta-G solvation = 29.688822 kcal Electronic energy + Delta-G solvation = -26520.370736 eV Core-core repulsion = 22706.575120 eV Total energy + Delta-G solvation = -3813.795617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.33005 -39.72131 -38.00892 -36.17226 -34.78963 -34.15279 -32.94317 -31.99867 -30.73651 -29.41896 -27.46853 -26.21340 -25.52772 -24.30887 -23.11742 -22.61156 -22.04475 -20.38977 -20.00255 -19.14156 -18.04291 -17.85886 -17.05576 -16.65636 -16.02271 -15.65758 -15.35283 -14.97249 -14.67652 -14.26270 -14.01082 -13.83932 -13.75246 -13.63676 -13.25544 -12.92411 -12.90262 -12.53564 -12.12421 -11.87828 -11.86005 -11.79399 -11.68704 -11.38144 -11.23885 -11.20813 -10.80532 -10.79603 -10.68105 -10.48895 -10.11513 -9.99343 -9.93899 -9.74131 -9.73647 -9.58855 -9.08072 -8.57415 -6.82371 -5.72050 -3.04223 0.90219 1.40789 2.61974 2.91032 3.06003 3.40459 3.45771 3.47673 3.77210 4.14146 4.44385 4.45087 4.49740 4.68011 4.73445 4.91884 5.04382 5.10841 5.16385 5.19220 5.22303 5.25061 5.32310 5.51905 5.52715 5.54684 5.62460 5.64134 5.73674 5.75912 5.83282 6.00934 6.05948 6.17532 6.26065 6.33211 6.47512 6.58096 6.62160 6.74323 6.93440 7.33435 7.56949 7.64901 7.77780 7.84082 8.01558 8.26282 9.22374 9.82747 10.49342 11.39999 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.002306 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.685766 B =12138.887225 C =13221.144947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.039 4.039 4 C -0.033 4.033 5 C -0.181 4.181 6 C -0.023 4.023 7 C 0.595 3.405 8 O -0.527 6.527 9 N -0.706 5.706 10 C 0.131 3.869 11 C -0.114 4.114 12 H 0.082 0.918 13 C 0.141 3.859 14 N -0.606 5.606 15 C -0.229 4.229 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.183 3.817 24 C -0.110 4.110 25 H 0.068 0.932 26 C -0.135 4.135 27 N -0.329 5.329 28 O 0.124 5.876 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.180 0.820 37 H 0.408 0.592 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.019 0.981 41 H 0.037 0.963 42 H 0.252 0.748 43 H 0.051 0.949 44 H 0.040 0.960 45 H 0.044 0.956 46 H 0.054 0.946 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.999 -6.713 -4.794 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.077 4.077 4 C -0.096 4.096 5 C -0.203 4.203 6 C -0.182 4.182 7 C 0.379 3.621 8 O -0.402 6.402 9 N -0.357 5.357 10 C 0.009 3.991 11 C -0.134 4.134 12 H 0.100 0.900 13 C 0.015 3.985 14 N -0.332 5.332 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.058 3.942 24 C -0.130 4.130 25 H 0.087 0.913 26 C -0.192 4.192 27 N -0.029 5.029 28 O 0.048 5.952 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.197 0.803 37 H 0.244 0.756 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.813 -6.659 -4.583 26.097 hybrid contribution 0.175 0.520 0.516 0.754 sum -24.639 -6.138 -4.066 25.715 Atomic orbital electron populations 1.21767 0.94772 1.02274 1.02190 1.21575 0.96433 0.94936 1.03255 1.20271 0.83183 0.99118 1.05127 1.24503 0.96230 1.03416 0.85498 1.22423 0.89673 1.06732 1.01493 1.23566 0.96902 1.07619 0.90142 1.16871 0.81639 0.77275 0.86356 1.90793 1.86807 1.50186 1.12462 1.45976 1.05474 1.73047 1.11210 1.21528 0.80706 1.02415 0.94500 1.22691 0.93368 1.00075 0.97217 0.90016 1.21596 0.88139 0.92705 0.96103 1.44458 1.00931 1.49974 1.37817 1.19060 0.93495 1.15214 1.07963 0.90475 1.24824 0.96182 1.00158 0.99237 1.69973 1.04119 1.43683 1.38896 0.86122 0.78128 0.78909 0.82772 1.21627 1.21775 1.20656 1.21227 0.90549 0.92445 0.89958 1.22440 0.94855 0.96386 0.99271 0.91340 1.21701 1.00568 0.95616 1.01333 1.74221 0.97177 1.15904 1.15625 1.84789 1.11094 1.65911 1.33451 0.92379 0.92227 0.92328 0.91226 0.91199 0.88998 0.88207 0.80266 0.75622 0.91143 0.90895 0.96344 0.94508 0.93763 0.93130 0.94168 0.93662 0.92697 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.91 37.16 0.37 -0.13 16 2 C -0.12 -0.53 5.92 -26.73 -0.16 -0.69 16 3 C -0.04 -0.17 5.78 -27.88 -0.16 -0.34 16 4 C -0.03 -0.28 6.73 -35.35 -0.24 -0.51 16 5 C -0.18 -1.82 10.92 -39.08 -0.43 -2.24 16 6 C -0.02 -0.30 7.19 -82.53 -0.59 -0.89 16 7 C 0.60 8.90 7.85 -12.11 -0.10 8.81 16 8 O -0.53 -9.11 16.95 5.37 0.09 -9.02 16 9 N -0.71 -10.11 5.50 -61.09 -0.34 -10.45 16 10 C 0.13 1.97 5.13 -4.04 -0.02 1.95 16 11 C -0.11 -1.94 2.50 -88.47 -0.22 -2.16 16 12 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 13 C 0.14 2.91 6.65 -2.53 -0.02 2.89 16 14 N -0.61 -15.55 3.39 -170.08 -0.58 -16.13 16 15 C -0.23 -6.46 10.27 -15.06 -0.15 -6.61 16 16 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 17 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 18 N -0.92 -27.14 10.36 55.49 0.57 -26.56 16 19 Si 0.91 22.31 29.56 -169.99 -5.02 17.29 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 C 0.18 4.41 4.98 -3.07 -0.02 4.40 16 24 C -0.11 -2.01 3.02 -88.79 -0.27 -2.27 16 25 H 0.07 1.20 8.04 -51.92 -0.42 0.79 16 26 C -0.13 -2.11 9.16 37.16 0.34 -1.77 16 27 N -0.33 -4.20 11.84 33.29 0.39 -3.80 16 28 O 0.12 1.31 11.18 17.25 0.19 1.50 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.18 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.41 5.57 8.23 -40.82 -0.34 5.24 16 38 H 0.07 1.02 8.10 -51.93 -0.42 0.59 16 39 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 40 H 0.02 0.39 7.90 -51.93 -0.41 -0.02 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.05 1.35 6.92 -51.93 -0.36 0.99 16 44 H 0.04 1.08 7.61 -51.93 -0.40 0.69 16 45 H 0.04 0.61 8.10 -51.93 -0.42 0.19 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.89 8.06 -51.93 -0.42 0.47 16 LS Contribution 388.03 15.07 5.85 5.85 Total: -1.00 -32.74 388.03 -8.38 -41.12 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.78 Total: 0.10 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.76 Total: 0.11 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.06 Total: -56.94 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.28 Total: -7.52 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.74 -8.38 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093095160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.807 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds