Wall clock time and date at job start Tue Mar 31 2020 13:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47623 * 2 1 4 4 N 1.30013 * 127.33430 * 90.01723 * 3 2 1 5 5 O 1.20659 * 112.30089 * 179.97438 * 4 3 2 6 6 C 1.33498 * 113.15397 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.82818 * 179.97438 * 6 5 4 8 8 C 1.37358 * 106.34196 * 359.97438 * 6 5 4 9 9 C 1.47405 * 128.56418 * 180.02562 * 8 6 5 10 10 O 1.21604 * 119.99856 * 89.97758 * 9 8 6 11 11 N 1.34773 * 119.99891 * 269.98009 * 9 8 6 12 12 C 1.46499 * 119.99677 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47155 * 180.02562 * 12 11 9 14 14 H 1.08996 * 110.64843 * 54.29837 * 13 12 11 15 15 C 1.54333 * 110.71931 * 291.15645 * 13 12 11 16 16 N 1.47024 * 107.26851 * 219.44474 * 15 13 12 17 17 C 1.36938 * 125.64467 * 178.97319 * 16 15 13 18 18 H 1.08004 * 120.00130 * 349.94867 * 17 16 15 19 19 C 1.38810 * 119.99994 * 169.93479 * 17 16 15 20 20 N 1.31622 * 120.00218 * 350.43320 * 19 17 16 21 21 Si 1.86799 * 120.00124 * 170.42404 * 19 17 16 22 22 H 1.48492 * 109.47306 * 94.14512 * 21 19 17 23 23 H 1.48495 * 109.47355 * 214.14966 * 21 19 17 24 24 H 1.48505 * 109.46942 * 334.14502 * 21 19 17 25 25 C 1.47418 * 108.70544 * 358.93996 * 16 15 13 26 26 C 1.55118 * 104.94516 * 24.00500 * 25 16 15 27 27 H 1.08999 * 110.94027 * 81.21457 * 26 25 16 28 28 C 1.52998 * 111.16595 * 205.13022 * 26 25 16 29 29 H 1.08998 * 109.46842 * 300.00603 * 1 2 3 30 30 H 1.09002 * 109.46407 * 60.00401 * 1 2 3 31 31 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47293 * 239.99370 * 2 1 3 33 33 H 1.09005 * 109.46902 * 119.99708 * 2 1 3 34 34 H 1.09000 * 109.47202 * 359.97438 * 7 6 5 35 35 H 1.08995 * 109.47315 * 119.97191 * 7 6 5 36 36 H 1.09001 * 109.47439 * 239.97689 * 7 6 5 37 37 H 0.97004 * 120.00352 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47377 * 300.00144 * 12 11 9 39 39 H 1.09004 * 109.47233 * 59.99817 * 12 11 9 40 40 H 1.08999 * 109.88223 * 338.85912 * 15 13 12 41 41 H 1.08991 * 109.87993 * 100.02800 * 15 13 12 42 42 H 0.96997 * 120.00465 * 179.97438 * 20 19 17 43 43 H 1.09004 * 110.36706 * 142.97035 * 25 16 15 44 44 H 1.09002 * 110.36997 * 265.29201 * 25 16 15 45 45 H 1.08994 * 109.47607 * 172.16820 * 28 26 25 46 46 H 1.09005 * 109.47241 * 292.17161 * 28 26 25 47 47 H 1.09006 * 109.46954 * 52.16808 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.2956 2.1641 1.0337 5 8 2.6846 3.2625 0.7208 6 6 2.7469 3.4405 -0.6008 7 6 3.1874 4.6867 -1.3247 8 6 2.3298 2.2618 -1.1696 9 6 2.2100 1.9233 -2.5992 10 8 3.1535 1.4327 -3.1890 11 7 1.0548 2.1575 -3.2527 12 6 0.9360 1.8215 -4.6737 13 6 -0.4653 2.1856 -5.1684 14 1 -0.6909 3.2293 -4.9498 15 6 -1.5247 1.2551 -4.5410 16 7 -2.5108 0.9483 -5.5875 17 6 -3.6031 0.1356 -5.4411 18 1 -3.7113 -0.4689 -4.5527 19 6 -4.5715 0.0889 -6.4345 20 7 -4.5418 0.9564 -7.4240 21 14 -5.9168 -1.2054 -6.3673 22 1 -7.1142 -0.6403 -5.6950 23 1 -6.2739 -1.6204 -7.7477 24 1 -5.4318 -2.3844 -5.6058 25 6 -2.1292 1.6612 -6.8202 26 6 -0.6024 1.9008 -6.6874 27 1 -0.0422 1.0095 -6.9700 28 6 -0.1590 3.1094 -7.5142 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.4581 5.4526 -0.5979 35 1 4.0504 4.4579 -1.9498 36 1 2.3722 5.0511 -1.9499 37 1 0.3020 2.5486 -2.7822 38 1 1.6785 2.3810 -5.2427 39 1 1.1035 0.7531 -4.8097 40 1 -1.0524 0.3354 -4.1956 41 1 -2.0135 1.7590 -3.7073 42 1 -5.2183 0.9235 -8.1184 43 1 -2.3432 1.0473 -7.6951 44 1 -2.6554 2.6135 -6.8861 45 1 0.8839 3.3373 -7.2941 46 1 -0.2653 2.8828 -8.5751 47 1 -0.7798 3.9694 -7.2624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093189565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:52 Heat of formation + Delta-G solvation = 28.557591 kcal Electronic energy + Delta-G solvation = -27659.779227 eV Core-core repulsion = 23845.934557 eV Total energy + Delta-G solvation = -3813.844670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.07075 -39.72798 -38.03406 -35.50201 -34.73421 -33.87921 -32.95110 -31.53936 -30.78990 -29.56568 -28.20850 -26.16927 -25.54909 -24.75397 -23.90334 -22.64397 -20.91572 -20.09227 -19.92885 -19.40189 -18.04983 -17.93109 -16.82539 -16.50105 -16.02970 -15.45478 -14.98139 -14.74498 -14.55519 -14.24740 -13.87053 -13.76198 -13.64776 -13.59340 -13.14601 -13.01542 -12.82127 -12.73416 -12.68691 -11.93472 -11.79881 -11.71997 -11.62001 -11.57289 -11.21741 -11.07845 -10.86637 -10.81870 -10.49436 -10.20272 -10.10396 -10.06092 -9.96766 -9.80919 -9.60738 -9.56064 -9.09971 -8.61397 -6.83617 -5.78261 -3.10831 1.08338 1.71971 2.29914 2.62129 3.19070 3.37063 3.43323 3.45103 3.86578 4.02537 4.45816 4.60126 4.66564 4.88584 5.00486 5.02590 5.05236 5.06259 5.16318 5.17492 5.21956 5.25479 5.42264 5.53322 5.54213 5.66213 5.68027 5.69995 5.79467 5.82940 5.98513 6.02734 6.04273 6.12748 6.19350 6.32155 6.44079 6.52687 6.57391 6.70659 6.88542 7.38020 7.47775 7.55768 7.75295 8.01844 8.04835 8.22640 9.16107 9.78020 10.45293 11.34735 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.003239 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.168853 B = 8641.547304 C = 9942.911201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C 0.062 3.938 4 N -0.356 5.356 5 O 0.095 5.905 6 C 0.016 3.984 7 C -0.080 4.080 8 C -0.250 4.250 9 C 0.598 3.402 10 O -0.529 6.529 11 N -0.711 5.711 12 C 0.132 3.868 13 C -0.109 4.109 14 H 0.078 0.922 15 C 0.141 3.859 16 N -0.603 5.603 17 C -0.231 4.231 18 H 0.075 0.925 19 C -0.006 4.006 20 N -0.917 5.917 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.181 3.819 26 C -0.113 4.113 27 H 0.072 0.928 28 C -0.135 4.135 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.404 0.596 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.024 0.976 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.068 0.932 44 H 0.027 0.973 45 H 0.045 0.955 46 H 0.054 0.946 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.289 6.934 10.822 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.100 4.100 4 N -0.062 5.062 5 O 0.034 5.966 6 C -0.047 4.047 7 C -0.137 4.137 8 C -0.257 4.257 9 C 0.382 3.618 10 O -0.406 6.406 11 N -0.361 5.361 12 C 0.009 3.991 13 C -0.129 4.129 14 H 0.096 0.904 15 C 0.015 3.985 16 N -0.329 5.329 17 C -0.359 4.359 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.056 3.944 26 C -0.133 4.133 27 H 0.090 0.910 28 C -0.192 4.192 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.238 0.762 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.708 6.349 11.576 19.764 hybrid contribution -1.197 -0.534 -0.477 1.394 sum 13.511 5.816 11.099 18.427 Atomic orbital electron populations 1.21740 0.93047 1.03064 1.02686 1.20044 0.97012 0.87352 1.04300 1.24786 1.00072 0.98795 0.86386 1.73602 1.16700 0.92519 1.23332 1.84539 1.62789 1.26745 1.22554 1.24608 0.98854 0.97448 0.83810 1.20482 1.03151 0.90681 0.99393 1.21948 1.13030 0.95290 0.95454 1.16846 0.82996 0.78216 0.83757 1.90825 1.38464 1.43338 1.67927 1.46063 1.14379 1.63579 1.12122 1.21540 0.97419 1.01190 0.78989 1.22487 0.92832 1.00113 0.97423 0.90367 1.21336 0.89964 0.95028 0.92156 1.44445 1.26560 1.55077 1.06800 1.19004 0.96814 1.15802 1.04267 0.90708 1.24809 0.98249 0.99001 0.98185 1.69949 1.36178 1.36116 1.14180 0.86151 0.81760 0.81201 0.76933 1.21618 1.21580 1.20590 1.21481 0.86129 0.96096 0.90706 1.22626 1.01023 0.97661 0.91964 0.91008 1.21652 0.99807 0.97833 0.99942 0.92302 0.91872 0.91088 0.89227 0.89552 0.89184 0.88559 0.88565 0.76196 0.91287 0.90968 0.95806 0.96400 0.93690 0.91336 0.95460 0.93564 0.92677 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.90 37.16 0.37 -1.11 16 2 C -0.05 -0.52 6.54 -27.88 -0.18 -0.70 16 3 C 0.06 0.76 6.84 -79.77 -0.55 0.21 16 4 N -0.36 -4.50 12.01 34.78 0.42 -4.08 16 5 O 0.10 1.07 11.06 18.64 0.21 1.28 16 6 C 0.02 0.16 7.55 -34.63 -0.26 -0.10 16 7 C -0.08 -0.49 10.33 36.00 0.37 -0.12 16 8 C -0.25 -3.02 6.24 -102.89 -0.64 -3.66 16 9 C 0.60 8.05 7.63 -12.53 -0.10 7.95 16 10 O -0.53 -8.94 17.11 5.27 0.09 -8.85 16 11 N -0.71 -8.64 5.43 -61.39 -0.33 -8.97 16 12 C 0.13 1.78 5.00 -4.04 -0.02 1.76 16 13 C -0.11 -1.68 2.45 -88.78 -0.22 -1.90 16 14 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 15 C 0.14 2.73 6.64 -3.06 -0.02 2.71 16 16 N -0.60 -14.85 3.40 -169.94 -0.58 -15.42 16 17 C -0.23 -6.30 10.24 -15.06 -0.15 -6.45 16 18 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 19 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 20 N -0.92 -26.38 10.68 55.49 0.59 -25.79 16 21 Si 0.91 21.73 29.56 -169.99 -5.03 16.70 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.18 4.16 4.91 -2.42 -0.01 4.14 16 26 C -0.11 -1.93 3.10 -88.36 -0.27 -2.21 16 27 H 0.07 1.24 8.05 -51.93 -0.42 0.83 16 28 C -0.13 -1.92 9.31 37.16 0.35 -1.57 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.40 4.34 8.39 -40.82 -0.34 4.00 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 40 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.07 1.78 6.94 -51.93 -0.36 1.42 16 44 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -32.51 389.63 -8.00 -40.50 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.80 Total: 0.06 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.43 Total: -1.30 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.10 Total: -54.26 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.30 Total: -7.57 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.51 -8.00 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093189565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.059 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds