Wall clock time and date at job start Tue Mar 31 2020 13:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.33692 * 126.27129 * 269.69249 * 3 2 1 5 5 C 1.30621 * 108.99506 * 179.88785 * 4 3 2 6 6 O 1.33662 * 109.15098 * 0.37741 * 5 4 3 7 7 C 1.35349 * 107.68846 * 359.76964 * 6 5 4 8 8 C 1.46719 * 126.64286 * 180.02562 * 7 6 5 9 9 O 1.21691 * 119.99706 * 179.97438 * 8 7 6 10 10 N 1.34768 * 120.00487 * 359.95405 * 8 7 6 11 11 C 1.46503 * 120.00357 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47295 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47286 * 179.97438 * 12 11 10 14 14 H 1.08995 * 110.88314 * 54.29851 * 13 12 11 15 15 C 1.54908 * 111.00352 * 290.42303 * 13 12 11 16 16 N 1.47475 * 104.80920 * 204.94782 * 15 13 12 17 17 C 1.36934 * 125.62727 * 204.04967 * 16 15 13 18 18 H 1.08001 * 120.00061 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99983 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00023 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47044 * 89.99890 * 21 19 17 23 23 H 1.48500 * 109.46991 * 209.99636 * 21 19 17 24 24 H 1.48496 * 109.47358 * 329.99758 * 21 19 17 25 25 C 1.47025 * 108.71861 * 24.06810 * 16 15 13 26 26 C 1.54314 * 107.27548 * 358.97714 * 25 16 15 27 27 H 1.08998 * 110.72175 * 96.16896 * 26 25 16 28 28 C 1.53005 * 110.87468 * 219.37319 * 26 25 16 29 29 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.08001 * 125.42421 * 180.14569 * 5 4 3 35 35 H 0.97000 * 119.99919 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.46926 * 300.00337 * 11 10 8 37 37 H 1.08994 * 109.47012 * 60.00180 * 11 10 8 38 38 H 1.09001 * 109.47209 * 300.00535 * 12 11 10 39 39 H 1.09008 * 109.47029 * 60.00081 * 12 11 10 40 40 H 1.09006 * 110.36335 * 323.74829 * 15 13 12 41 41 H 1.09000 * 110.36964 * 86.07591 * 15 13 12 42 42 H 0.97003 * 120.00066 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.88032 * 239.55292 * 25 16 15 44 44 H 1.09003 * 109.87794 * 118.39975 * 25 16 15 45 45 H 1.09000 * 109.47465 * 173.60676 * 28 26 25 46 46 H 1.08998 * 109.46870 * 293.61310 * 28 26 25 47 47 H 1.09006 * 109.46795 * 53.60507 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3014 2.1646 -1.0778 5 6 2.7128 3.3421 -0.6900 6 8 2.7270 3.3835 0.6459 7 6 2.3012 2.1813 1.0992 8 6 2.1564 1.7755 2.5017 9 8 1.7600 0.6576 2.7737 10 7 2.4627 2.6405 3.4886 11 6 2.3186 2.2351 4.8891 12 6 2.7283 3.3938 5.8003 13 6 2.5773 2.9706 7.2628 14 1 3.1289 2.0515 7.4602 15 6 1.0840 2.8148 7.6443 16 7 1.0443 3.0216 9.1039 17 6 0.0796 2.5455 9.9511 18 1 -0.7424 1.9637 9.5609 19 6 0.1575 2.8117 11.3112 20 7 1.1589 3.5212 11.7866 21 14 -1.1590 2.1629 12.4668 22 1 -0.7658 0.8185 12.9599 23 1 -1.3068 3.0888 13.6184 24 1 -2.4507 2.0656 11.7409 25 6 2.2115 3.8238 9.4987 26 6 3.0274 4.1060 8.2197 27 1 2.7723 5.0820 7.8069 28 6 4.5289 4.0145 8.4995 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.9998 4.1519 -1.3444 35 1 2.7785 3.5317 3.2718 36 1 1.2800 1.9688 5.0852 37 1 2.9577 1.3743 5.0856 38 1 3.7668 3.6606 5.6042 39 1 2.0888 4.2544 5.6035 40 1 0.4824 3.5697 7.1380 41 1 0.7304 1.8149 7.3924 42 1 1.2136 3.7069 12.7371 43 1 2.8200 3.2671 10.2114 44 1 1.8825 4.7630 9.9434 45 1 5.0793 4.1044 7.5630 46 1 4.8227 4.8200 9.1725 47 1 4.7542 3.0537 8.9626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103420798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:09 Heat of formation + Delta-G solvation = -6.432890 kcal Electronic energy + Delta-G solvation = -26809.192719 eV Core-core repulsion = 22993.830747 eV Total energy + Delta-G solvation = -3815.361972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.81303 -39.77197 -38.18200 -36.22879 -35.23781 -33.31300 -33.20896 -31.41596 -30.67073 -29.88086 -27.02794 -25.74297 -24.91046 -24.08684 -23.66947 -22.16916 -21.54341 -20.81546 -19.81774 -19.25205 -18.41460 -17.24970 -16.86005 -16.82267 -16.10391 -15.64023 -15.21562 -14.94412 -14.55882 -14.29594 -14.14608 -13.89174 -13.69179 -13.57643 -13.06837 -12.98848 -12.58907 -12.35326 -11.97038 -11.80854 -11.72532 -11.47167 -11.42563 -11.33642 -11.23015 -11.20474 -11.08407 -10.77096 -10.75931 -10.37245 -10.04714 -9.89636 -9.85479 -9.65679 -9.50394 -9.47696 -9.13444 -8.57471 -6.79371 -5.68335 -3.01387 0.47915 2.06649 2.10014 2.81952 2.94580 3.41923 3.46984 3.48740 3.64503 4.32466 4.42877 4.52393 4.82275 4.98463 5.05466 5.05768 5.14422 5.17647 5.24441 5.39936 5.45994 5.48682 5.59519 5.65274 5.70701 5.71781 5.77294 5.87302 5.92201 5.94375 6.03756 6.07743 6.18656 6.22537 6.24765 6.34381 6.51121 6.63532 6.65868 6.79312 7.00633 7.04217 7.27431 7.60172 7.67152 7.80302 7.86717 8.29478 9.25632 9.86039 10.52404 11.43334 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.002372 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.843998 B =11802.400162 C =12883.450362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C 0.082 3.918 4 N -0.492 5.492 5 C 0.200 3.800 6 O -0.192 6.192 7 C -0.112 4.112 8 C 0.605 3.395 9 O -0.509 6.509 10 N -0.715 5.715 11 C 0.117 3.883 12 C -0.117 4.117 13 C -0.095 4.095 14 H 0.077 0.923 15 C 0.139 3.861 16 N -0.607 5.607 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.183 3.817 26 C -0.114 4.114 27 H 0.064 0.936 28 C -0.133 4.133 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.256 0.744 35 H 0.404 0.596 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.017 0.983 41 H 0.038 0.962 42 H 0.251 0.749 43 H 0.047 0.953 44 H 0.039 0.961 45 H 0.042 0.958 46 H 0.051 0.949 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.485 0.910 -24.229 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 C -0.042 4.042 4 N -0.221 5.221 5 C -0.025 4.025 6 O -0.078 6.078 7 C -0.167 4.167 8 C 0.389 3.611 9 O -0.386 6.386 10 N -0.365 5.365 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.115 4.115 14 H 0.095 0.905 15 C 0.013 3.987 16 N -0.333 5.333 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.059 3.941 26 C -0.134 4.134 27 H 0.082 0.918 28 C -0.191 4.191 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.272 0.728 35 H 0.238 0.762 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.035 0.965 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.097 -0.008 -24.332 25.085 hybrid contribution -0.346 0.674 1.065 1.306 sum 5.751 0.666 -23.268 23.977 Atomic orbital electron populations 1.21641 0.93648 1.02461 1.02043 1.20187 0.96790 0.87640 1.04462 1.22096 0.97448 0.98303 0.86303 1.70353 1.16980 1.03261 1.31477 1.28349 0.97234 0.97562 0.79404 1.84491 1.64716 1.34067 1.24500 1.23018 1.11983 0.85263 0.96435 1.16315 0.78455 0.85014 0.81291 1.90892 1.46464 1.19522 1.81751 1.45997 1.66831 1.16882 1.06831 1.21622 1.02899 0.98362 0.77661 1.21756 1.01535 0.97286 0.94922 1.22331 0.98642 0.99014 0.91533 0.90451 1.21631 0.92593 0.97834 0.86674 1.44485 1.26395 1.61668 1.00767 1.19070 1.01358 1.27076 0.87956 0.90494 1.24796 0.98462 1.00517 0.96811 1.69968 1.31281 1.43277 1.12537 0.86128 0.80984 0.78067 0.80663 1.21624 1.21723 1.20720 1.21205 0.86983 0.95514 0.90443 1.22480 0.95343 0.97157 0.98375 0.91805 1.21677 0.95482 1.01791 1.00110 0.92761 0.91540 0.92258 0.88079 0.90055 0.72790 0.76155 0.90402 0.90882 0.91516 0.91220 0.96542 0.94409 0.93835 0.93438 0.94238 0.93845 0.92989 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.89 37.16 0.37 -0.95 16 2 C -0.05 -0.53 5.92 -27.88 -0.17 -0.70 16 3 C 0.08 0.90 6.41 -82.47 -0.53 0.38 16 4 N -0.49 -4.90 11.26 -10.88 -0.12 -5.02 16 5 C 0.20 1.36 13.21 52.25 0.69 2.05 16 6 O -0.19 -1.67 10.57 4.41 0.05 -1.62 16 7 C -0.11 -1.23 7.18 -36.84 -0.26 -1.49 16 8 C 0.60 7.44 7.79 -12.84 -0.10 7.34 16 9 O -0.51 -7.57 14.79 5.20 0.08 -7.49 16 10 N -0.72 -7.60 5.55 -61.61 -0.34 -7.94 16 11 C 0.12 1.40 5.55 -4.04 -0.02 1.38 16 12 C -0.12 -1.40 4.84 -26.73 -0.13 -1.53 16 13 C -0.10 -1.54 2.48 -88.47 -0.22 -1.76 16 14 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 15 C 0.14 2.81 6.04 -2.50 -0.02 2.79 16 16 N -0.61 -15.54 3.40 -170.03 -0.58 -16.12 16 17 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -27.29 10.31 55.49 0.57 -26.71 16 21 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.18 4.40 4.97 -3.07 -0.02 4.39 16 26 C -0.11 -2.02 3.01 -88.79 -0.27 -2.29 16 27 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 28 C -0.13 -2.02 9.17 37.16 0.34 -1.68 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.11 6.47 -51.93 -0.34 0.77 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.26 0.30 8.06 -52.49 -0.42 -0.12 16 35 H 0.40 3.40 8.27 -40.82 -0.34 3.06 16 36 H 0.08 1.05 7.59 -51.93 -0.39 0.66 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.82 8.03 -51.92 -0.42 0.40 16 40 H 0.02 0.34 7.96 -51.93 -0.41 -0.08 16 41 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.05 1.27 7.02 -51.93 -0.36 0.90 16 44 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -33.65 383.42 -7.85 -41.50 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.68 Total: -0.73 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.58 Total: 1.03 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.47 Total: -55.79 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.12 Total: -9.11 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.65 -7.85 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103420798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.070 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds