Wall clock time and date at job start Tue Mar 31 2020 13:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46937 * 2 1 4 4 C 1.35313 * 126.66934 * 89.99539 * 3 2 1 5 5 C 1.42268 * 103.91986 * 180.02562 * 4 3 2 6 6 C 1.48337 * 126.93514 * 179.97438 * 5 4 3 7 7 O 1.21496 * 119.99925 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99901 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99766 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46907 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.46868 * 179.97438 * 10 9 8 12 12 H 1.08996 * 110.63831 * 54.29970 * 11 10 9 13 13 C 1.54322 * 110.72035 * 291.15667 * 11 10 9 14 14 N 1.47015 * 107.27201 * 219.26924 * 13 11 10 15 15 C 1.36940 * 125.65158 * 178.97647 * 14 13 11 16 16 H 1.07993 * 119.99693 * 349.93645 * 15 14 13 17 17 C 1.38810 * 119.99983 * 169.94195 * 15 14 13 18 18 N 1.31613 * 120.00397 * 350.42160 * 17 15 14 19 19 Si 1.86802 * 119.99666 * 170.42275 * 17 15 14 20 20 H 1.48495 * 109.47147 * 94.14119 * 19 17 15 21 21 H 1.48500 * 109.47054 * 214.13856 * 19 17 15 22 22 H 1.48501 * 109.47259 * 334.13744 * 19 17 15 23 23 C 1.47429 * 108.70197 * 358.94352 * 14 13 11 24 24 C 1.54901 * 104.83474 * 24.12802 * 23 14 13 25 25 H 1.08995 * 111.00497 * 81.06526 * 24 23 14 26 26 C 1.53001 * 111.00719 * 204.92143 * 24 23 14 27 27 N 1.30979 * 106.12498 * 0.26631 * 5 4 3 28 28 O 1.20902 * 111.43811 * 359.53064 * 27 5 4 29 29 H 1.08994 * 109.46987 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47542 * 300.00677 * 1 2 3 31 31 H 1.09004 * 109.46562 * 60.00659 * 1 2 3 32 32 H 1.08992 * 109.47286 * 239.99346 * 2 1 3 33 33 H 1.09004 * 109.46562 * 119.99341 * 2 1 3 34 34 H 1.08002 * 128.03850 * 0.04644 * 4 3 2 35 35 H 0.96997 * 119.99864 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.47058 * 60.00159 * 9 8 6 37 37 H 1.09001 * 109.46940 * 299.99665 * 9 8 6 38 38 H 1.08995 * 109.47233 * 59.99816 * 10 9 8 39 39 H 1.09001 * 109.47170 * 299.99675 * 10 9 8 40 40 H 1.09004 * 109.88291 * 338.68775 * 13 11 10 41 41 H 1.08997 * 109.88336 * 99.69476 * 13 11 10 42 42 H 0.97002 * 120.00714 * 180.02562 * 18 17 15 43 43 H 1.09000 * 110.36956 * 142.97350 * 23 14 13 44 44 H 1.09008 * 110.36400 * 265.28847 * 23 14 13 45 45 H 1.08996 * 109.47153 * 172.19628 * 26 24 23 46 46 H 1.08998 * 109.46615 * 292.19531 * 26 24 23 47 47 H 1.09003 * 109.46958 * 52.19219 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3016 2.1828 1.0853 5 6 2.7383 3.4200 0.5352 6 6 3.1643 4.6276 1.2839 7 8 3.1623 4.6212 2.4989 8 7 3.5537 5.7318 0.6165 9 6 3.9749 6.9242 1.3559 10 6 4.3638 8.0260 0.3681 11 6 4.8032 9.2716 1.1404 12 1 5.5946 9.0254 1.8483 13 6 3.6030 9.9160 1.8655 14 7 3.7538 11.3738 1.7486 15 6 2.8837 12.3084 2.2431 16 1 1.9217 12.0014 2.6259 17 6 3.2381 13.6505 2.2521 18 7 4.4719 14.0073 1.9647 19 14 1.9638 14.9501 2.6723 20 1 2.0391 15.2670 4.1211 21 1 2.2310 16.1789 1.8823 22 1 0.6084 14.4378 2.3474 23 6 4.9974 11.6627 1.0114 24 6 5.2639 10.3904 0.1690 25 1 4.6625 10.3906 -0.7400 26 6 6.7516 10.2522 -0.1603 27 7 2.6823 3.2795 -0.7658 28 8 2.2985 2.1755 -1.0750 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 2.2072 1.9140 2.1271 35 1 3.5556 5.7368 -0.3535 36 1 4.8325 6.6791 1.9824 37 1 3.1540 7.2715 1.9834 38 1 3.5065 8.2712 -0.2587 39 1 5.1849 7.6785 -0.2590 40 1 2.6722 9.6006 1.3941 41 1 3.6039 9.6240 2.9156 42 1 4.7197 14.9451 1.9713 43 1 4.8609 12.5267 0.3610 44 1 5.8189 11.8364 1.7066 45 1 6.9315 9.2854 -0.6304 46 1 7.0481 11.0488 -0.8427 47 1 7.3351 10.3242 0.7576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103654074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:07 Heat of formation + Delta-G solvation = 29.548604 kcal Electronic energy + Delta-G solvation = -26322.888672 eV Core-core repulsion = 22509.086975 eV Total energy + Delta-G solvation = -3813.801697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.43704 -39.78954 -38.16924 -35.51975 -35.25591 -34.21760 -33.20947 -31.24390 -30.67732 -30.50627 -27.22135 -25.77890 -25.08449 -24.56282 -23.74110 -22.72694 -21.96072 -20.36809 -19.68703 -19.19644 -18.19655 -17.87195 -17.05584 -16.78597 -15.95754 -15.70481 -15.14244 -14.96097 -14.89457 -14.42220 -14.06287 -13.87610 -13.80744 -13.55422 -13.16221 -12.99034 -12.80532 -12.38715 -12.13472 -12.05484 -11.99470 -11.64958 -11.54106 -11.49676 -11.16826 -11.11042 -10.79116 -10.76727 -10.72059 -10.51145 -10.05568 -9.93649 -9.85829 -9.83234 -9.68308 -9.44925 -9.23706 -8.54324 -6.74883 -5.71045 -3.03007 0.78426 1.31448 2.51387 2.77188 2.94474 3.41691 3.47280 3.49527 3.65148 4.06409 4.44151 4.52772 4.60085 4.63447 4.74273 4.86704 4.95713 5.08451 5.13684 5.25990 5.26891 5.40368 5.45314 5.49549 5.52462 5.57248 5.63681 5.65641 5.75370 5.90655 5.95832 6.11239 6.21344 6.25646 6.28755 6.34002 6.53995 6.62484 6.72042 6.82631 7.03657 7.18432 7.56320 7.64487 7.65325 7.82702 7.89225 8.30640 9.23859 9.85919 10.54230 11.42072 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021496 B = 0.002087 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.231250 B =13415.654170 C =14179.547284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.042 4.042 3 C -0.032 4.032 4 C -0.181 4.181 5 C -0.022 4.022 6 C 0.595 3.405 7 O -0.521 6.521 8 N -0.711 5.711 9 C 0.117 3.883 10 C -0.117 4.117 11 C -0.091 4.091 12 H 0.074 0.926 13 C 0.139 3.861 14 N -0.604 5.604 15 C -0.227 4.227 16 H 0.075 0.925 17 C -0.009 4.009 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.180 3.820 24 C -0.116 4.116 25 H 0.068 0.932 26 C -0.134 4.134 27 N -0.333 5.333 28 O 0.122 5.878 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.181 0.819 35 H 0.406 0.594 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.022 0.978 41 H 0.020 0.980 42 H 0.252 0.748 43 H 0.066 0.934 44 H 0.027 0.973 45 H 0.043 0.957 46 H 0.052 0.948 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 -28.302 -7.286 29.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.080 4.080 3 C -0.095 4.095 4 C -0.204 4.204 5 C -0.181 4.181 6 C 0.378 3.622 7 O -0.395 6.395 8 N -0.362 5.362 9 C -0.006 4.006 10 C -0.155 4.155 11 C -0.111 4.111 12 H 0.093 0.907 13 C 0.013 3.987 14 N -0.330 5.330 15 C -0.356 4.356 16 H 0.093 0.907 17 C -0.205 4.205 18 N -0.566 5.566 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.055 3.945 24 C -0.136 4.136 25 H 0.086 0.914 26 C -0.191 4.191 27 N -0.034 5.034 28 O 0.047 5.953 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.198 0.802 35 H 0.241 0.759 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.003 -27.162 -7.338 28.207 hybrid contribution -0.707 0.486 0.589 1.041 sum -2.710 -26.676 -6.749 27.650 Atomic orbital electron populations 1.21822 0.93236 1.02955 1.03089 1.20169 0.96821 0.85964 1.05071 1.24551 1.02243 0.97265 0.85419 1.22447 1.04736 0.91600 1.01589 1.23564 1.06346 0.98070 0.90150 1.16879 0.77780 0.81148 0.86404 1.90824 1.53637 1.82612 1.12435 1.45956 1.66185 1.13154 1.10950 1.21630 1.00776 0.83159 0.95016 1.21795 1.01553 0.94355 0.97788 1.22125 0.98541 0.93035 0.97383 0.90720 1.21375 0.94578 0.86135 0.96633 1.44477 1.24823 0.99284 1.64426 1.19025 0.95391 0.86584 1.34578 0.90720 1.24817 0.96412 0.97323 1.01972 1.69957 1.15936 1.15686 1.55000 0.86140 0.80671 0.81426 0.77761 1.21639 1.21645 1.20643 1.21437 0.88036 0.92484 0.92525 1.22625 0.95195 0.97649 0.98119 0.91381 1.21640 0.96125 1.00234 1.01140 1.74174 1.14229 0.99350 1.15601 1.84771 1.60064 1.17020 1.33492 0.91042 0.91895 0.91914 0.89027 0.88184 0.80184 0.75925 0.90968 0.90436 0.91083 0.91457 0.96025 0.96172 0.93772 0.91550 0.95547 0.93756 0.92930 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.89 37.16 0.37 -0.13 16 2 C -0.04 -0.14 6.50 -27.88 -0.18 -0.32 16 3 C -0.03 -0.23 6.73 -35.35 -0.24 -0.47 16 4 C -0.18 -1.66 10.92 -39.08 -0.43 -2.09 16 5 C -0.02 -0.26 7.19 -82.53 -0.59 -0.85 16 6 C 0.59 8.19 7.85 -12.10 -0.09 8.10 16 7 O -0.52 -8.70 16.95 5.37 0.09 -8.61 16 8 N -0.71 -8.76 5.55 -61.09 -0.34 -9.10 16 9 C 0.12 1.55 5.54 -4.04 -0.02 1.53 16 10 C -0.12 -1.54 4.73 -26.73 -0.13 -1.67 16 11 C -0.09 -1.54 2.42 -88.78 -0.21 -1.76 16 12 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 13 C 0.14 2.93 6.10 -3.07 -0.02 2.91 16 14 N -0.60 -15.78 3.39 -170.08 -0.58 -16.35 16 15 C -0.23 -6.50 10.24 -15.06 -0.15 -6.65 16 16 H 0.07 2.08 7.85 -52.49 -0.41 1.67 16 17 C -0.01 -0.25 5.40 -17.43 -0.09 -0.35 16 18 N -0.92 -27.40 10.68 55.49 0.59 -26.81 16 19 Si 0.91 22.48 29.56 -169.99 -5.03 17.46 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.18 4.38 4.89 -2.53 -0.01 4.36 16 24 C -0.12 -2.13 3.09 -88.47 -0.27 -2.40 16 25 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 26 C -0.13 -2.05 9.31 37.16 0.35 -1.70 16 27 N -0.33 -3.70 11.84 33.29 0.39 -3.31 16 28 O 0.12 1.13 11.18 17.26 0.19 1.32 16 29 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.41 4.30 8.23 -40.82 -0.34 3.96 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 38 H 0.07 0.95 8.00 -51.93 -0.42 0.54 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.02 0.45 7.73 -51.93 -0.40 0.05 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.07 1.80 6.94 -51.93 -0.36 1.44 16 44 H 0.03 0.70 7.91 -51.92 -0.41 0.29 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -33.63 387.48 -8.34 -41.97 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.77 Total: -0.91 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.74 Total: -1.49 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.07 Total: -55.57 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.28 Total: -7.29 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.63 -8.34 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103654074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.517 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds