Wall clock time and date at job start Tue Mar 31 2020 13:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47194 * 2 1 4 4 N 1.29928 * 125.37708 * 90.00176 * 3 2 1 5 5 C 1.36070 * 108.47806 * 179.97438 * 4 3 2 6 6 C 1.47419 * 126.45449 * 180.02562 * 5 4 3 7 7 O 1.21606 * 120.00089 * 180.02562 * 6 5 4 8 8 N 1.34774 * 119.99625 * 0.02562 * 6 5 4 9 9 C 1.46503 * 120.00292 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47661 * 176.27472 * 9 8 6 11 11 N 1.46497 * 109.46748 * 54.66752 * 10 9 8 12 12 C 1.36938 * 120.00112 * 63.14815 * 11 10 9 13 13 H 1.07995 * 119.99984 * 353.80036 * 12 11 10 14 14 C 1.38820 * 119.99883 * 174.08527 * 12 11 10 15 15 N 1.31614 * 119.99730 * 179.72149 * 14 12 11 16 16 Si 1.86797 * 119.99980 * 359.71999 * 14 12 11 17 17 H 1.48498 * 109.47065 * 90.00306 * 16 14 12 18 18 H 1.48505 * 109.46897 * 210.00308 * 16 14 12 19 19 H 1.48498 * 109.47182 * 330.00094 * 16 14 12 20 20 C 1.52998 * 109.47170 * 174.66508 * 10 9 8 21 21 C 1.53003 * 109.46862 * 180.02562 * 20 10 9 22 22 C 1.53000 * 109.47076 * 300.00294 * 21 20 10 23 23 C 1.52996 * 109.47215 * 60.00333 * 22 21 20 24 24 C 1.53000 * 109.46929 * 294.66901 * 10 9 8 25 25 C 1.36094 * 107.09810 * 0.26021 * 5 4 3 26 26 O 1.34048 * 125.37773 * 269.95912 * 3 2 1 27 27 H 1.09004 * 109.47266 * 59.99970 * 1 2 3 28 28 H 1.08990 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46734 * 300.00245 * 1 2 3 30 30 H 1.08994 * 109.47113 * 240.00162 * 2 1 3 31 31 H 1.08997 * 109.46880 * 119.99907 * 2 1 3 32 32 H 0.96998 * 120.00441 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.46458 * 56.27394 * 9 8 6 34 34 H 1.08998 * 109.46726 * 296.28202 * 9 8 6 35 35 H 0.97003 * 119.99900 * 243.15004 * 11 10 9 36 36 H 0.97000 * 120.00049 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.47108 * 300.00537 * 20 10 9 38 38 H 1.09000 * 109.46689 * 60.00483 * 20 10 9 39 39 H 1.09000 * 109.46974 * 180.02562 * 21 20 10 40 40 H 1.09000 * 109.47081 * 60.00714 * 21 20 10 41 41 H 1.09000 * 109.46845 * 299.99498 * 22 21 20 42 42 H 1.09007 * 109.46531 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.47224 * 180.02562 * 23 22 21 44 44 H 1.08992 * 109.47266 * 59.99757 * 23 22 21 45 45 H 1.08992 * 109.47202 * 299.99764 * 24 10 9 46 46 H 1.09000 * 109.47161 * 59.99897 * 24 10 9 47 47 H 1.08001 * 126.52151 * 179.73808 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2832 2.1300 1.0594 5 6 2.7177 3.3573 0.6638 6 6 3.1127 4.4722 1.5438 7 8 3.4848 5.5248 1.0617 8 7 3.0613 4.3248 2.8824 9 6 3.4544 5.4325 3.7570 10 6 3.2166 5.0393 5.2164 11 7 3.9148 3.7839 5.5038 12 6 5.2804 3.7253 5.4202 13 1 5.8354 4.5730 5.0466 14 6 5.9508 2.5740 5.8102 15 7 7.2628 2.5156 5.7248 16 14 4.9907 1.1076 6.4563 17 1 4.6291 0.2156 5.3256 18 1 5.8259 0.3592 7.4298 19 1 3.7539 1.5824 7.1273 20 6 3.7494 6.1410 6.1347 21 6 3.5121 5.7475 7.5941 22 6 2.0125 5.5632 7.8353 23 6 1.4798 4.4615 6.9170 24 6 1.7169 4.8555 5.4571 25 6 2.7140 3.3637 -0.6971 26 8 2.2918 2.1523 -1.0930 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7649 3.4851 3.2669 33 1 2.8596 6.3138 3.5166 34 1 4.5109 5.6555 3.6082 35 1 3.4098 2.9942 5.7532 36 1 7.7314 1.7113 5.9977 37 1 4.8178 6.2720 5.9630 38 1 3.2298 7.0751 5.9208 39 1 3.8913 6.5325 8.2483 40 1 4.0320 4.8135 7.8076 41 1 1.4928 6.4973 7.6218 42 1 1.8436 5.2833 8.8751 43 1 0.4113 4.3306 7.0885 44 1 1.9996 3.5276 7.1305 45 1 1.1974 5.7896 5.2432 46 1 1.3373 4.0707 4.8029 47 1 2.9992 4.1858 -1.3368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115495603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:01 Heat of formation + Delta-G solvation = -44.834769 kcal Electronic energy + Delta-G solvation = -28293.894114 eV Core-core repulsion = 24476.866912 eV Total energy + Delta-G solvation = -3817.027202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.48791 -41.00771 -39.83653 -36.14588 -35.91608 -35.11491 -34.84194 -33.07795 -31.60723 -31.00589 -30.42930 -27.26738 -25.42274 -25.34860 -24.64685 -23.45725 -22.30128 -21.69223 -21.38337 -19.85349 -19.74350 -19.16737 -17.91449 -17.52088 -17.06393 -16.57292 -16.32477 -16.14228 -15.80710 -15.61024 -15.40087 -15.07306 -14.95725 -14.65650 -14.40156 -14.30424 -13.96806 -13.66600 -13.59826 -13.34584 -12.96481 -12.85932 -12.69672 -12.64023 -12.41782 -12.32977 -12.11585 -12.05632 -11.92462 -11.89204 -11.69614 -11.40310 -11.32233 -11.15904 -10.78939 -10.75678 -10.21422 -9.90548 -9.26147 -7.95132 -5.27738 0.04638 0.94055 1.37904 1.40454 1.47228 1.54296 2.11094 2.26945 2.52163 2.84891 3.35615 3.52053 3.71832 3.75516 3.85691 3.92651 4.04811 4.19507 4.24371 4.33914 4.35843 4.41806 4.55337 4.61333 4.62816 4.69833 4.70037 4.75626 4.85823 4.91732 4.97515 5.00754 5.04130 5.06335 5.14603 5.20570 5.33479 5.36476 5.41339 5.46023 5.50114 5.60829 5.73443 5.87860 6.28425 6.32838 6.61455 7.10119 7.14892 7.89031 8.08703 9.26861 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.004429 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.279638 B = 6319.953569 C = 7022.709778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.029 4.029 3 C 0.201 3.799 4 N -0.488 5.488 5 C -0.101 4.101 6 C 0.591 3.409 7 O -0.578 6.578 8 N -0.682 5.682 9 C 0.120 3.880 10 C 0.194 3.806 11 N -0.731 5.731 12 C -0.197 4.197 13 H 0.052 0.948 14 C -0.064 4.064 15 N -0.988 5.988 16 Si 0.942 3.058 17 H -0.285 1.285 18 H -0.306 1.306 19 H -0.246 1.246 20 C -0.112 4.112 21 C -0.108 4.108 22 C -0.108 4.108 23 C -0.115 4.115 24 C -0.111 4.111 25 C 0.026 3.974 26 O -0.192 6.192 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.409 0.591 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.365 0.635 36 H 0.252 0.748 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.414 -1.426 -8.499 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.009 4.009 4 N -0.217 5.217 5 C -0.220 4.220 6 C 0.377 3.623 7 O -0.460 6.460 8 N -0.330 5.330 9 C -0.006 4.006 10 C 0.104 3.896 11 N -0.374 5.374 12 C -0.328 4.328 13 H 0.070 0.930 14 C -0.254 4.254 15 N -0.640 5.640 16 Si 0.771 3.229 17 H -0.211 1.211 18 H -0.233 1.233 19 H -0.170 1.170 20 C -0.151 4.151 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.048 4.048 26 O -0.078 6.078 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.246 0.754 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.199 0.801 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -19.039 -0.826 -8.185 20.740 hybrid contribution 0.810 -1.005 -0.048 1.292 sum -18.229 -1.831 -8.233 20.085 Atomic orbital electron populations 1.21768 0.91716 1.04391 1.02372 1.20426 0.97813 0.81571 1.06837 1.27223 0.97972 0.97978 0.77683 1.70750 1.16765 1.02842 1.31379 1.21765 1.11779 0.94406 0.94003 1.17070 0.77439 0.85360 0.82449 1.90746 1.50473 1.28743 1.76015 1.45591 1.64609 1.18049 1.04782 1.21852 0.98657 0.88641 0.91403 1.20030 0.92673 0.86783 0.90111 1.42729 1.02721 1.08566 1.83373 1.18737 0.82852 0.98995 1.32203 0.92962 1.25355 0.95879 1.01054 1.03145 1.69887 1.08108 1.29054 1.56930 0.85594 0.78919 0.80380 0.78005 1.21133 1.23325 1.16998 1.21732 0.99866 0.97742 0.95771 1.21333 0.97167 1.00674 0.95427 1.21470 0.94685 0.99202 0.99168 1.21506 1.01074 0.98485 0.94209 1.21732 0.93117 1.02730 0.97334 1.25726 0.97066 0.87063 0.94989 1.84406 1.63474 1.22146 1.37779 0.91881 0.88449 0.93139 0.86086 0.87270 0.75431 0.90465 0.94974 0.80123 0.93918 0.94757 0.90357 0.92262 0.94017 0.90460 0.91751 0.90030 0.93820 0.89168 0.92071 0.72683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.89 71.98 0.71 -0.96 16 2 C -0.03 -0.42 6.56 29.85 0.20 -0.22 16 3 C 0.20 4.83 7.56 88.39 0.67 5.50 16 4 N -0.49 -15.23 11.06 -293.04 -3.24 -18.47 16 5 C -0.10 -3.30 6.99 40.41 0.28 -3.01 16 6 C 0.59 22.50 7.81 86.66 0.68 23.18 16 7 O -0.58 -24.24 16.89 -4.05 -0.07 -24.31 16 8 N -0.68 -25.59 5.09 -466.38 -2.37 -27.96 16 9 C 0.12 4.49 4.37 86.38 0.38 4.87 16 10 C 0.19 6.76 0.41 3.60 0.00 6.76 16 11 N -0.73 -31.38 3.19 -303.35 -0.97 -32.35 16 12 C -0.20 -10.71 9.18 84.04 0.77 -9.94 16 13 H 0.05 3.23 7.01 -2.91 -0.02 3.21 16 14 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 15 N -0.99 -63.95 13.97 21.65 0.30 -63.65 16 16 Si 0.94 45.35 27.67 68.60 1.90 47.25 16 17 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 18 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 19 H -0.25 -10.48 6.62 99.48 0.66 -9.82 16 20 C -0.11 -3.78 4.51 30.59 0.14 -3.64 16 21 C -0.11 -3.45 5.77 30.60 0.18 -3.27 16 22 C -0.11 -2.66 5.92 30.59 0.18 -2.48 16 23 C -0.12 -2.94 5.75 30.61 0.18 -2.76 16 24 C -0.11 -3.00 4.65 30.61 0.14 -2.86 16 25 C 0.03 0.65 11.95 67.32 0.80 1.45 16 26 O -0.19 -4.43 10.73 0.45 0.00 -4.43 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.41 15.28 7.12 -92.71 -0.66 14.62 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.03 1.44 7.51 -2.39 -0.02 1.43 16 35 H 0.36 15.34 4.57 -92.71 -0.42 14.92 16 36 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.03 1.39 7.23 -2.39 -0.02 1.37 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.64 7.60 -2.39 -0.02 1.62 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.04 1.32 6.92 -2.39 -0.02 1.31 16 45 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.06 1.65 7.29 -2.39 -0.02 1.63 16 47 H 0.26 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -75.37 375.58 1.18 -74.19 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: -0.15 Total: 40.36 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.77 Total: 9.37 kcal Atomic # 7 Polarization: -136.15 SS G_CDS: -6.28 Total: -142.43 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.06 Total: -28.74 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Total: -75.37 1.18 -74.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115495603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.354 kcal (2) G-P(sol) polarization free energy of solvation -75.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds