Wall clock time and date at job start Tue Mar 31 2020 12:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47213 * 2 1 4 4 C 1.35316 * 126.67072 * 89.99922 * 3 2 1 5 5 C 1.42264 * 103.92595 * 179.97438 * 4 3 2 6 6 C 1.48333 * 126.93840 * 179.97438 * 5 4 3 7 7 O 1.21495 * 119.99832 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99878 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00292 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47582 * 176.63254 * 9 8 6 11 11 N 1.46494 * 109.46929 * 54.62948 * 10 9 8 12 12 C 1.36934 * 120.00219 * 62.83689 * 11 10 9 13 13 H 1.08001 * 120.00166 * 354.26258 * 12 11 10 14 14 C 1.38812 * 120.00307 * 174.53391 * 12 11 10 15 15 N 1.31619 * 119.99693 * 359.72807 * 14 12 11 16 16 Si 1.86796 * 120.00216 * 179.72327 * 14 12 11 17 17 H 1.48498 * 109.46951 * 90.00464 * 16 14 12 18 18 H 1.48499 * 109.47195 * 210.00338 * 16 14 12 19 19 H 1.48500 * 109.47307 * 330.00277 * 16 14 12 20 20 C 1.52997 * 109.46895 * 174.62852 * 10 9 8 21 21 C 1.53011 * 109.46794 * 179.97438 * 20 10 9 22 22 C 1.53000 * 109.46961 * 300.00361 * 21 20 10 23 23 C 1.52991 * 109.47516 * 59.99889 * 22 21 20 24 24 C 1.52997 * 109.47198 * 299.99957 * 23 22 21 25 25 N 1.30990 * 106.12468 * 0.26412 * 5 4 3 26 26 O 1.20909 * 111.43204 * 359.53068 * 25 5 4 27 27 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46845 * 300.00173 * 1 2 3 29 29 H 1.09000 * 109.46719 * 59.99761 * 1 2 3 30 30 H 1.09003 * 109.47559 * 239.99999 * 2 1 3 31 31 H 1.09003 * 109.47421 * 120.00043 * 2 1 3 32 32 H 1.08002 * 128.03371 * 359.96474 * 4 3 2 33 33 H 0.96998 * 120.00441 * 0.02562 * 8 6 5 34 34 H 1.09013 * 109.46773 * 56.63128 * 9 8 6 35 35 H 1.08996 * 109.46857 * 296.63898 * 9 8 6 36 36 H 0.96999 * 120.00233 * 242.83480 * 11 10 9 37 37 H 0.97008 * 119.99912 * 179.97438 * 15 14 12 38 38 H 1.08994 * 109.47488 * 299.99979 * 20 10 9 39 39 H 1.09000 * 109.47359 * 60.00353 * 20 10 9 40 40 H 1.09000 * 109.46910 * 180.02562 * 21 20 10 41 41 H 1.09000 * 109.46821 * 60.00095 * 21 20 10 42 42 H 1.09000 * 109.47136 * 299.99542 * 22 21 20 43 43 H 1.08997 * 109.46600 * 180.02562 * 22 21 20 44 44 H 1.08999 * 109.47565 * 179.97438 * 23 22 21 45 45 H 1.09000 * 109.47202 * 59.99693 * 23 22 21 46 46 H 1.08998 * 109.47309 * 299.99752 * 24 23 22 47 47 H 1.09008 * 109.47316 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3017 2.1827 1.0853 5 6 2.7397 3.4195 0.5353 6 6 3.1663 4.6268 1.2841 7 8 3.1637 4.6206 2.4990 8 7 3.5567 5.7307 0.6166 9 6 3.9786 6.9230 1.3561 10 6 4.4476 7.9950 0.3704 11 7 3.3910 8.2516 -0.6113 12 6 2.1838 8.7525 -0.2028 13 1 1.9770 8.8715 0.8505 14 6 1.2237 9.1023 -1.1424 15 7 1.4757 8.9573 -2.4260 16 14 -0.4259 9.7784 -0.5849 17 1 -0.3455 11.2576 -0.4823 18 1 -1.4721 9.4068 -1.5712 19 1 -0.7718 9.2083 0.7420 20 6 4.7612 9.2849 1.1311 21 6 5.2309 10.3569 0.1455 22 6 6.4900 9.8706 -0.5750 23 6 6.1765 8.5807 -1.3356 24 6 5.7068 7.5089 -0.3500 25 7 2.6842 3.2789 -0.7658 26 8 2.2997 2.1751 -1.0750 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.2062 1.9143 2.1271 33 1 3.5584 5.7358 -0.3533 34 1 4.7973 6.6634 2.0274 35 1 3.1397 7.3057 1.9373 36 1 3.5465 8.0666 -1.5507 37 1 0.8046 9.2014 -3.0827 38 1 3.8643 9.6311 1.6447 39 1 5.5474 9.0941 1.8616 40 1 5.4547 11.2757 0.6875 41 1 4.4450 10.5479 -0.5853 42 1 7.2759 9.6797 0.1558 43 1 6.8248 10.6345 -1.2767 44 1 7.0734 8.2346 -1.8492 45 1 5.3906 8.7717 -2.0663 46 1 6.4927 7.3178 0.3808 47 1 5.4830 6.5899 -0.8920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120032340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:59 Heat of formation + Delta-G solvation = -3.911075 kcal Electronic energy + Delta-G solvation = -28053.175618 eV Core-core repulsion = 24237.923000 eV Total energy + Delta-G solvation = -3815.252617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.18463 -41.05506 -39.85573 -36.06304 -35.80723 -35.21269 -34.82789 -32.84314 -31.59232 -31.14469 -30.34880 -27.50659 -25.75893 -25.32324 -24.83459 -23.60413 -23.24933 -21.81094 -21.02689 -19.83644 -19.11381 -18.91626 -18.56511 -17.94683 -17.06196 -16.69779 -16.24953 -16.07589 -15.69909 -15.52181 -15.38975 -15.15688 -14.94076 -14.62820 -14.36341 -14.35449 -13.68700 -13.50533 -13.43661 -13.30604 -12.95659 -12.87915 -12.82896 -12.64212 -12.55942 -12.40221 -12.10036 -11.92162 -11.84802 -11.71369 -11.56466 -11.51591 -11.33705 -11.10894 -10.76821 -10.75144 -10.47750 -10.10180 -8.95824 -7.90957 -5.16389 0.04903 0.64987 1.41344 1.43010 1.48955 1.86058 2.02856 2.13025 2.54849 2.91044 3.40938 3.50276 3.76145 3.86641 3.90358 3.96604 4.08969 4.11187 4.19580 4.35310 4.35782 4.43115 4.44837 4.63028 4.67023 4.71867 4.73428 4.77506 4.86641 4.91121 4.98336 5.01084 5.05860 5.14209 5.14758 5.18832 5.30017 5.40104 5.45055 5.47210 5.50531 5.57461 5.63132 5.79373 6.30713 6.34758 6.91137 7.06297 7.39525 8.12336 8.37455 9.31557 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.004052 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.284815 B = 6907.961693 C = 8243.407774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.037 4.037 3 C -0.017 4.017 4 C -0.192 4.192 5 C -0.050 4.050 6 C 0.587 3.413 7 O -0.565 6.565 8 N -0.682 5.682 9 C 0.117 3.883 10 C 0.189 3.811 11 N -0.711 5.711 12 C -0.210 4.210 13 H 0.064 0.936 14 C -0.065 4.065 15 N -0.960 5.960 16 Si 0.949 3.051 17 H -0.288 1.288 18 H -0.300 1.300 19 H -0.282 1.282 20 C -0.112 4.112 21 C -0.106 4.106 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.109 4.109 25 N -0.352 5.352 26 O 0.127 5.873 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.195 0.805 33 H 0.407 0.593 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.375 0.625 37 H 0.246 0.754 38 H 0.041 0.959 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.041 0.959 46 H 0.087 0.913 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.094 -15.824 4.870 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.075 4.075 3 C -0.081 4.081 4 C -0.215 4.215 5 C -0.207 4.207 6 C 0.372 3.628 7 O -0.444 6.444 8 N -0.331 5.331 9 C -0.008 4.008 10 C 0.098 3.902 11 N -0.352 5.352 12 C -0.343 4.343 13 H 0.082 0.918 14 C -0.257 4.257 15 N -0.612 5.612 16 Si 0.780 3.220 17 H -0.216 1.216 18 H -0.228 1.228 19 H -0.208 1.208 20 C -0.152 4.152 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.150 4.150 24 C -0.146 4.146 25 N -0.051 5.051 26 O 0.049 5.951 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.212 0.788 33 H 0.244 0.756 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.209 0.791 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.105 0.895 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.278 -14.817 4.839 17.203 hybrid contribution -1.596 0.589 0.031 1.701 sum 5.683 -14.228 4.869 16.076 Atomic orbital electron populations 1.21840 0.93174 1.04017 1.02104 1.20444 0.96650 0.83206 1.07185 1.25328 1.00325 0.98353 0.84066 1.22650 1.05431 0.90660 1.02740 1.23579 1.08059 0.98524 0.90582 1.17188 0.77456 0.81935 0.86229 1.90712 1.56401 1.83791 1.13481 1.45730 1.63962 1.12162 1.11242 1.21963 0.98780 0.85050 0.95028 1.20054 0.88585 0.92192 0.89373 1.42511 1.10728 1.76274 1.05656 1.19224 0.91787 1.31660 0.91607 0.91785 1.25216 1.01118 1.03934 0.95471 1.69772 1.35106 1.56346 0.99932 0.85504 0.81521 0.78287 0.76660 1.21582 1.22753 1.20773 1.21766 1.00112 0.95529 0.97765 1.21306 0.97543 0.97378 0.98164 1.21441 0.97078 0.96701 0.99143 1.21429 1.00422 0.95448 0.97697 1.21671 0.96179 0.97920 0.98870 1.74264 1.14852 1.00123 1.15848 1.84756 1.59367 1.16626 1.34383 0.88720 0.92824 0.93194 0.87067 0.85696 0.78784 0.75633 0.90493 0.94087 0.79131 0.94461 0.93983 0.90484 0.92116 0.94209 0.90508 0.92154 0.90731 0.94053 0.89479 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.89 71.98 0.71 -0.90 16 2 C -0.04 -0.37 6.50 29.85 0.19 -0.18 16 3 C -0.02 -0.36 6.73 25.01 0.17 -0.19 16 4 C -0.19 -4.93 10.92 22.60 0.25 -4.68 16 5 C -0.05 -1.70 7.19 42.96 0.31 -1.39 16 6 C 0.59 22.90 7.85 86.93 0.68 23.59 16 7 O -0.56 -23.97 16.95 -3.70 -0.06 -24.03 16 8 N -0.68 -26.33 5.09 -465.49 -2.37 -28.70 16 9 C 0.12 4.39 4.36 86.38 0.38 4.77 16 10 C 0.19 6.84 0.41 3.60 0.00 6.84 16 11 N -0.71 -32.70 3.40 -303.36 -1.03 -33.74 16 12 C -0.21 -11.13 8.70 84.03 0.73 -10.40 16 13 H 0.06 3.42 6.77 -2.91 -0.02 3.40 16 14 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 15 N -0.96 -57.42 13.07 21.65 0.28 -57.14 16 16 Si 0.95 47.11 29.55 68.60 2.03 49.13 16 17 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 18 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 19 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 20 C -0.11 -3.80 4.52 30.60 0.14 -3.66 16 21 C -0.11 -3.53 5.77 30.60 0.18 -3.36 16 22 C -0.11 -2.92 5.92 30.59 0.18 -2.74 16 23 C -0.11 -3.34 5.75 30.59 0.18 -3.16 16 24 C -0.11 -3.29 4.65 30.59 0.14 -3.14 16 25 N -0.35 -11.95 11.84 -49.52 -0.59 -12.53 16 26 O 0.13 3.46 11.18 71.89 0.80 4.27 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.19 4.14 8.06 -2.91 -0.02 4.11 16 33 H 0.41 16.30 7.15 -92.71 -0.66 15.63 16 34 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.04 1.75 7.50 -2.39 -0.02 1.73 16 36 H 0.38 18.87 6.63 -92.71 -0.61 18.26 16 37 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 38 H 0.04 1.60 7.23 -2.39 -0.02 1.58 16 39 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.67 7.60 -2.39 -0.02 1.66 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.04 1.51 6.92 -2.39 -0.02 1.50 16 46 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.05 1.64 7.28 -2.38 -0.02 1.62 16 Total: -1.00 -68.67 378.23 3.47 -65.20 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -0.29 Total: 39.35 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 4.70 Total: -1.81 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -3.71 Total: -132.11 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.74 Total: -19.77 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Total: -68.67 3.47 -65.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120032340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.288 kcal (2) G-P(sol) polarization free energy of solvation -68.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds