Wall clock time and date at job start Tue Mar 31 2020 13:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50700 * 109.46969 * 2 1 4 4 O 1.34249 * 126.52625 * 269.97604 * 3 2 1 5 5 C 1.34059 * 108.22436 * 180.02562 * 4 3 2 6 6 N 1.29928 * 109.24104 * 359.72326 * 5 4 3 7 7 C 1.36066 * 108.48149 * 0.44402 * 6 5 4 8 8 C 1.47415 * 126.45221 * 179.82600 * 7 6 5 9 9 O 1.21605 * 120.00539 * 173.77051 * 8 7 6 10 10 N 1.34776 * 119.99819 * 353.76981 * 8 7 6 11 11 C 1.46931 * 120.63318 * 354.95909 * 10 8 7 12 12 C 1.53186 * 108.77507 * 126.37417 * 11 10 8 13 13 C 1.53031 * 109.31733 * 54.63455 * 12 11 10 14 14 H 1.09008 * 109.46014 * 58.65652 * 13 12 11 15 15 C 1.53005 * 109.46163 * 178.61376 * 13 12 11 16 16 C 1.53040 * 109.54033 * 298.63738 * 13 12 11 17 17 H 1.08999 * 109.52180 * 301.39714 * 16 13 12 18 18 C 1.53000 * 109.49843 * 181.31623 * 16 13 12 19 19 N 1.46503 * 109.47019 * 175.16126 * 18 16 13 20 20 C 1.36933 * 119.99936 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00211 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99986 * 179.97438 * 20 19 18 23 23 N 1.31612 * 119.99940 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99868 * 179.72811 * 22 20 19 25 25 H 1.48500 * 109.47019 * 90.00112 * 24 22 20 26 26 H 1.48500 * 109.46931 * 209.99937 * 24 22 20 27 27 H 1.48505 * 109.47234 * 330.00032 * 24 22 20 28 28 C 1.46929 * 120.63175 * 174.94196 * 10 8 7 29 29 H 1.09003 * 109.46932 * 299.99446 * 1 2 3 30 30 H 1.08999 * 109.46902 * 59.99710 * 1 2 3 31 31 H 1.09001 * 109.46847 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46932 * 240.00554 * 2 1 3 33 33 H 1.08999 * 109.46902 * 120.00290 * 2 1 3 34 34 H 1.08003 * 125.37328 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.58800 * 246.16052 * 11 10 8 36 36 H 1.08998 * 109.58165 * 6.43789 * 11 10 8 37 37 H 1.09002 * 109.49790 * 174.59588 * 12 11 10 38 38 H 1.09008 * 109.49517 * 294.65139 * 12 11 10 39 39 H 1.09005 * 109.46907 * 180.02562 * 15 13 12 40 40 H 1.08995 * 109.46981 * 300.06758 * 15 13 12 41 41 H 1.08995 * 109.46605 * 60.07137 * 15 13 12 42 42 H 1.08992 * 109.47176 * 55.15707 * 18 16 13 43 43 H 1.09005 * 109.46998 * 295.15574 * 18 16 13 44 44 H 0.96993 * 119.99899 * 0.02562 * 19 18 16 45 45 H 0.96998 * 119.99898 * 180.02562 * 23 22 20 46 46 H 1.09004 * 109.58669 * 113.84120 * 28 10 8 47 47 H 1.08999 * 109.58438 * 353.41146 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2991 2.1740 -1.0788 5 6 2.7237 3.3739 -0.6578 6 7 2.7251 3.3960 0.6413 7 6 2.3025 2.1844 1.0937 8 6 2.1583 1.7774 2.5032 9 8 1.6623 0.7016 2.7779 10 7 2.5761 2.5978 3.4876 11 6 3.2764 3.8502 3.1716 12 6 2.5560 5.0076 3.8702 13 6 2.4491 4.7077 5.3670 14 1 3.4476 4.5700 5.7820 15 6 1.7607 5.8775 6.0734 16 6 1.6297 3.4322 5.5762 17 1 0.6390 3.5600 5.1400 18 6 1.4957 3.1513 7.0742 19 7 0.6161 1.9976 7.2779 20 6 0.3470 1.5573 8.5463 21 1 0.7828 2.0609 9.3966 22 6 -0.4869 0.4644 8.7394 23 7 -1.0184 -0.1489 7.7033 24 14 -0.8479 -0.1408 10.4694 25 1 -2.0494 0.5547 10.9964 26 1 -1.0963 -1.6046 10.4399 27 1 0.3151 0.1463 11.3471 28 6 2.3396 2.2569 4.8971 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 3.0138 4.1943 -1.2976 35 1 4.3055 3.7930 3.5264 36 1 3.2700 4.0104 2.0935 37 1 3.1197 5.9289 3.7229 38 1 1.5569 5.1214 3.4492 39 1 1.6849 5.6642 7.1396 40 1 2.3442 6.7859 5.9245 41 1 0.7620 6.0150 5.6591 42 1 1.0715 4.0238 7.5710 43 1 2.4789 2.9370 7.4931 44 1 0.2250 1.5451 6.5143 45 1 -1.6013 -0.9123 7.8382 46 1 3.2924 2.0698 5.3926 47 1 1.7129 1.3671 4.9576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132721151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:42 Heat of formation + Delta-G solvation = -0.098602 kcal Electronic energy + Delta-G solvation = -28153.553213 eV Core-core repulsion = 24338.465917 eV Total energy + Delta-G solvation = -3815.087296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.70798 -39.95999 -37.86896 -35.42548 -34.64232 -34.27007 -33.48631 -31.75648 -29.80919 -29.47739 -28.05518 -25.86439 -24.52449 -23.92271 -23.12235 -22.69821 -21.69049 -21.10649 -19.96619 -19.25417 -17.60132 -17.02680 -16.94473 -16.46845 -15.84454 -15.16203 -14.98049 -14.76815 -14.63707 -14.27565 -13.93187 -13.77643 -13.58567 -13.42773 -13.23125 -12.96072 -12.72937 -12.60954 -12.42207 -12.00793 -11.76395 -11.67045 -11.57343 -11.43671 -11.20299 -10.95456 -10.90797 -10.72044 -10.62558 -10.36648 -10.10157 -10.04660 -9.94139 -9.58051 -9.37067 -9.15359 -8.78895 -8.33688 -6.82127 -5.66581 -2.95680 0.95332 1.83450 2.32237 3.11075 3.34358 3.49265 3.53887 3.56088 3.78902 4.38902 4.55794 4.65741 4.86100 4.95844 5.04226 5.06124 5.08815 5.11503 5.33573 5.35120 5.46861 5.53088 5.59986 5.66696 5.73592 5.74894 5.80307 5.84476 5.92535 5.95948 6.05720 6.10708 6.13439 6.16483 6.26981 6.32585 6.42799 6.43843 6.56459 6.65273 6.83169 6.91011 6.98826 7.20210 7.63322 7.77781 8.30177 8.51397 9.62336 10.21093 10.55550 11.55888 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.003683 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.467638 B = 7600.075003 C = 9379.322596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.046 3.954 4 O -0.198 6.198 5 C 0.171 3.829 6 N -0.459 5.459 7 C -0.066 4.066 8 C 0.593 3.407 9 O -0.525 6.525 10 N -0.591 5.591 11 C 0.062 3.938 12 C -0.121 4.121 13 C -0.087 4.087 14 H 0.069 0.931 15 C -0.147 4.147 16 C -0.100 4.100 17 H 0.072 0.928 18 C 0.159 3.841 19 N -0.733 5.733 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.120 3.880 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.254 0.746 35 H 0.055 0.945 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.027 0.973 43 H 0.018 0.982 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.066 0.934 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.786 9.605 -20.362 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.010 4.010 4 O -0.085 6.085 5 C -0.057 4.057 6 N -0.188 5.188 7 C -0.185 4.185 8 C 0.380 3.620 9 O -0.402 6.402 10 N -0.322 5.322 11 C -0.060 4.060 12 C -0.159 4.159 13 C -0.106 4.106 14 H 0.087 0.913 15 C -0.204 4.204 16 C -0.120 4.120 17 H 0.091 0.909 18 C 0.031 3.969 19 N -0.377 5.377 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.001 4.001 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.269 0.731 35 H 0.074 0.926 36 H 0.164 0.836 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.698 9.504 -19.677 23.907 hybrid contribution -0.418 -0.626 0.348 0.829 sum 9.279 8.878 -19.330 23.207 Atomic orbital electron populations 1.21713 0.92775 1.03174 1.02575 1.20396 0.97394 0.85158 1.05298 1.23850 0.98386 0.95659 0.83119 1.84373 1.63631 1.24131 1.36329 1.28166 0.98847 0.87080 0.91577 1.70274 1.18249 1.20969 1.09312 1.21596 1.10069 0.91020 0.95815 1.16797 0.78649 0.84146 0.82425 1.90848 1.45051 1.21632 1.82643 1.47927 1.56226 1.21675 1.06370 1.22905 0.94320 0.82485 1.06336 1.21881 1.01106 0.97636 0.95269 1.21131 0.99414 0.94999 0.95028 0.91281 1.21879 1.00242 0.97012 1.01288 1.21695 0.99085 0.93599 0.97576 0.90914 1.20727 0.94010 0.91199 0.90989 1.42418 1.56008 1.33207 1.06112 1.19209 1.23242 1.09709 0.84967 0.91278 1.24738 1.00435 0.98719 0.97024 1.69672 1.36342 1.23685 1.28147 0.86221 0.77999 0.77882 0.84267 1.21826 1.21808 1.20820 1.21779 1.00890 0.99410 0.78065 0.91286 0.92832 0.90895 0.89864 0.86455 0.73053 0.92645 0.83568 0.91283 0.91875 0.91763 0.93300 0.92880 0.95524 0.96410 0.78151 0.93551 0.91597 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.90 37.16 0.37 -1.16 16 2 C -0.05 -0.48 5.87 -27.88 -0.16 -0.64 16 3 C 0.05 0.54 6.69 -35.08 -0.23 0.31 16 4 O -0.20 -1.90 10.73 6.51 0.07 -1.83 16 5 C 0.17 1.32 13.19 51.96 0.69 2.00 16 6 N -0.46 -5.15 7.72 -11.48 -0.09 -5.23 16 7 C -0.07 -0.90 6.73 -83.02 -0.56 -1.46 16 8 C 0.59 10.02 7.68 -12.52 -0.10 9.92 16 9 O -0.53 -10.33 14.32 5.27 0.08 -10.26 16 10 N -0.59 -9.46 2.97 -174.03 -0.52 -9.98 16 11 C 0.06 0.80 6.33 -3.71 -0.02 0.78 16 12 C -0.12 -1.47 5.36 -26.62 -0.14 -1.61 16 13 C -0.09 -1.19 2.23 -90.58 -0.20 -1.39 16 14 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 15 C -0.15 -1.89 8.82 37.16 0.33 -1.56 16 16 C -0.10 -1.74 1.92 -90.50 -0.17 -1.92 16 17 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 18 C 0.16 3.29 5.41 -4.04 -0.02 3.27 16 19 N -0.73 -19.28 5.38 -59.91 -0.32 -19.60 16 20 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -29.17 13.06 55.49 0.72 -28.44 16 24 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.12 2.17 5.50 -3.71 -0.02 2.15 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.12 1.45 6.62 -51.93 -0.34 1.11 16 34 H 0.25 0.52 8.06 -52.48 -0.42 0.10 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.15 1.79 3.64 -78.18 -0.28 1.51 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 39 H 0.06 0.89 6.30 -51.93 -0.33 0.56 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.56 6.15 -51.93 -0.32 0.24 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 10.81 6.89 -40.82 -0.28 10.52 16 45 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.10 2.25 6.23 -51.93 -0.32 1.92 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -34.49 372.03 -7.32 -41.82 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.34 Total: 8.79 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.50 Total: 1.11 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.20 Total: -63.25 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.15 Total: -12.09 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.49 -7.32 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132721151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.718 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds