Wall clock time and date at job start Tue Mar 31 2020 13:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47243 * 2 1 4 4 N 1.29940 * 125.37881 * 89.99949 * 3 2 1 5 5 C 1.36067 * 108.47754 * 179.97438 * 4 3 2 6 6 C 1.47422 * 126.44654 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99682 * 173.45473 * 6 5 4 8 8 N 1.34773 * 120.00365 * 353.45848 * 6 5 4 9 9 C 1.46932 * 120.62808 * 3.97919 * 8 6 5 10 10 C 1.52763 * 109.00664 * 233.58521 * 9 8 6 11 11 C 1.53036 * 109.38260 * 305.58937 * 10 9 8 12 12 H 1.09002 * 109.45929 * 181.26031 * 11 10 9 13 13 C 1.52999 * 109.44942 * 301.22212 * 11 10 9 14 14 C 1.53040 * 109.53974 * 61.24115 * 11 10 9 15 15 H 1.08995 * 109.49613 * 58.58598 * 14 11 10 16 16 C 1.52997 * 109.49746 * 178.68572 * 14 11 10 17 17 N 1.46500 * 109.47211 * 184.83531 * 16 14 11 18 18 C 1.36938 * 120.00021 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99830 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99695 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00191 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47436 * 90.00025 * 22 20 18 24 24 H 1.48502 * 109.47235 * 210.00426 * 22 20 18 25 25 H 1.48507 * 109.47020 * 329.99933 * 22 20 18 26 26 C 1.46920 * 120.63277 * 184.25979 * 8 6 5 27 27 C 1.36095 * 107.10239 * 359.97438 * 5 4 3 28 28 O 1.34051 * 125.37948 * 269.69053 * 3 2 1 29 29 H 1.09003 * 109.47110 * 59.99883 * 1 2 3 30 30 H 1.09000 * 109.47291 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47231 * 300.00307 * 1 2 3 32 32 H 1.09003 * 109.47110 * 120.00117 * 2 1 3 33 33 H 1.09001 * 109.47231 * 239.99693 * 2 1 3 34 34 H 1.09004 * 109.58682 * 353.41625 * 9 8 6 35 35 H 1.08993 * 109.58749 * 113.84189 * 9 8 6 36 36 H 1.08997 * 109.56407 * 185.54754 * 10 9 8 37 37 H 1.09007 * 109.38632 * 65.51310 * 10 9 8 38 38 H 1.08998 * 109.47533 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47520 * 300.06829 * 13 11 10 40 40 H 1.09007 * 109.46944 * 60.06104 * 13 11 10 41 41 H 1.09011 * 109.47176 * 304.83554 * 16 14 11 42 42 H 1.09005 * 109.47783 * 64.83372 * 16 14 11 43 43 H 0.96996 * 119.99850 * 359.97438 * 17 16 14 44 44 H 0.97007 * 119.99529 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58658 * 246.15241 * 26 8 6 46 46 H 1.09004 * 109.58853 * 6.57622 * 26 8 6 47 47 H 1.07993 * 126.52175 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2831 2.1300 1.0595 5 6 2.7176 3.3573 0.6639 6 6 3.1116 4.4725 1.5439 7 8 3.5961 5.4810 1.0675 8 7 2.9348 4.3743 2.8764 9 6 2.4321 3.1303 3.4752 10 6 1.2142 3.4510 4.3399 11 6 1.5840 4.5337 5.3563 12 1 0.7223 4.7476 5.9887 13 6 2.7439 4.0425 6.2246 14 6 2.0032 5.8071 4.6181 15 1 1.1859 6.1435 3.9803 16 6 2.3412 6.8990 5.6351 17 7 2.6305 8.1502 4.9301 18 6 2.9603 9.2748 5.6385 19 1 3.0074 9.2392 6.7169 20 6 3.2339 10.4604 4.9705 21 7 3.5514 11.5412 5.6514 22 14 3.1517 10.5221 3.1054 23 1 1.7768 10.8910 2.6824 24 1 4.1134 11.5349 2.6007 25 1 3.4996 9.1894 2.5502 26 6 3.2353 5.5112 3.7572 27 6 2.7201 3.3615 -0.6971 28 8 2.2966 2.1505 -1.0929 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 2.1454 2.4348 2.6863 35 1 3.2092 2.6830 4.0949 36 1 0.8934 2.5521 4.8662 37 1 0.4040 3.8096 3.7049 38 1 3.0073 4.8131 6.9491 39 1 2.4456 3.1355 6.7505 40 1 3.6059 3.8289 5.5925 41 1 1.4937 7.0469 6.3047 42 1 3.2140 6.5984 6.2147 43 1 2.5885 8.1821 3.9615 44 1 3.7430 12.3697 5.1845 45 1 4.0792 5.2620 4.4004 46 1 3.4786 6.3862 3.1544 47 1 3.0111 4.1815 -1.3367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132756531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:59 Heat of formation + Delta-G solvation = 5.539582 kcal Electronic energy + Delta-G solvation = -28061.819205 eV Core-core repulsion = 24246.976399 eV Total energy + Delta-G solvation = -3814.842806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.81666 -40.26234 -38.10802 -35.63607 -34.93316 -34.35814 -33.42111 -31.85539 -30.23617 -29.84036 -27.72075 -26.28410 -25.10954 -24.67332 -23.39387 -22.83697 -21.69597 -21.04625 -20.03505 -18.60320 -17.55557 -17.38261 -17.18591 -16.82893 -15.99057 -15.27313 -15.14478 -15.04353 -14.89455 -14.82167 -14.20322 -14.00071 -13.62279 -13.54460 -13.32559 -13.19879 -12.97846 -12.61681 -12.49766 -12.35289 -12.29434 -11.76009 -11.70704 -11.58325 -11.47378 -11.11702 -11.09965 -10.80693 -10.72301 -10.43858 -10.26954 -10.11794 -10.01940 -9.58762 -9.47430 -9.35523 -8.82346 -8.45036 -7.15346 -5.70126 -3.05211 0.84212 1.66539 2.20310 2.91331 3.19736 3.46032 3.47003 3.53926 3.55885 4.33903 4.38062 4.57728 4.64670 4.68039 4.77011 4.85263 4.94768 4.95641 5.17907 5.20183 5.22563 5.26024 5.35642 5.41909 5.42305 5.52786 5.61377 5.61839 5.64367 5.73171 5.76219 5.85393 5.93528 6.00558 6.08737 6.25137 6.27427 6.35031 6.37814 6.49519 6.68866 6.74964 6.85252 7.11415 7.47423 8.05910 8.12725 8.49030 9.28337 10.01312 10.20888 11.48219 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.003509 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.987718 B = 7977.065083 C = 9240.701423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 C 0.198 3.802 4 N -0.455 5.455 5 C -0.060 4.060 6 C 0.593 3.407 7 O -0.534 6.534 8 N -0.588 5.588 9 C 0.060 3.940 10 C -0.124 4.124 11 C -0.086 4.086 12 H 0.073 0.927 13 C -0.152 4.152 14 C -0.105 4.105 15 H 0.072 0.928 16 C 0.165 3.835 17 N -0.757 5.757 18 C -0.243 4.243 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.935 5.935 22 Si 0.879 3.121 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.272 1.272 26 C 0.116 3.884 27 C 0.011 3.989 28 O -0.194 6.194 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.149 0.851 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.030 0.970 42 H 0.032 0.968 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.947 -29.366 -11.273 32.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.066 4.066 3 C -0.010 4.010 4 N -0.186 5.186 5 C -0.180 4.180 6 C 0.380 3.620 7 O -0.412 6.412 8 N -0.319 5.319 9 C -0.062 4.062 10 C -0.162 4.162 11 C -0.105 4.105 12 H 0.091 0.909 13 C -0.209 4.209 14 C -0.125 4.125 15 H 0.090 0.910 16 C 0.037 3.963 17 N -0.403 5.403 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.584 5.584 22 Si 0.709 3.291 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.198 1.198 26 C -0.005 4.005 27 C -0.062 4.062 28 O -0.080 6.080 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.166 0.834 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.694 -28.898 -10.727 31.346 hybrid contribution 0.081 0.657 -1.832 1.948 sum -5.613 -28.241 -12.559 31.413 Atomic orbital electron populations 1.21803 0.92783 1.03223 1.03214 1.20155 0.97076 0.83873 1.05544 1.26596 0.98832 0.96947 0.78637 1.70311 1.16983 1.03090 1.28191 1.21865 1.09004 0.94021 0.93100 1.16853 0.78775 0.84648 0.81771 1.90869 1.44990 1.30429 1.74880 1.47937 1.63475 1.15254 1.05233 1.22906 0.95896 0.86947 1.00439 1.21821 0.97910 0.98929 0.97585 1.21086 0.98753 0.94318 0.96318 0.90852 1.21982 0.98295 1.00935 0.99738 1.21735 0.97685 0.95545 0.97522 0.90980 1.20671 0.98049 0.84635 0.92912 1.42787 1.85307 1.07444 1.04765 1.19045 1.38895 0.86581 0.92716 0.89224 1.24649 1.01553 0.95644 0.97209 1.69709 1.53790 1.00615 1.34243 0.86614 0.77588 0.77554 0.87338 1.21167 1.21695 1.19779 1.21821 0.97345 0.88911 0.92428 1.25297 0.98823 0.86431 0.95672 1.84390 1.63380 1.22544 1.37715 0.92062 0.90681 0.91512 0.87291 0.88632 0.83443 0.91910 0.91002 0.92082 0.91756 0.93074 0.92485 0.95213 0.95060 0.80569 0.93129 0.90796 0.88614 0.75213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.89 37.15 0.37 -0.22 16 2 C -0.03 -0.12 6.56 -27.89 -0.18 -0.31 16 3 C 0.20 1.68 7.56 -13.08 -0.10 1.58 16 4 N -0.46 -4.94 7.68 -7.65 -0.06 -5.00 16 5 C -0.06 -0.78 6.75 -83.02 -0.56 -1.34 16 6 C 0.59 9.61 7.69 -12.52 -0.10 9.51 16 7 O -0.53 -10.48 16.33 5.27 0.09 -10.39 16 8 N -0.59 -8.91 2.98 -174.30 -0.52 -9.43 16 9 C 0.06 0.72 5.82 -3.93 -0.02 0.70 16 10 C -0.12 -1.39 5.61 -26.83 -0.15 -1.54 16 11 C -0.09 -1.09 2.71 -90.58 -0.25 -1.34 16 12 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.15 -1.81 8.11 37.16 0.30 -1.50 16 14 C -0.11 -1.72 2.15 -90.50 -0.19 -1.92 16 15 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 16 C 0.16 3.27 5.19 -4.04 -0.02 3.25 16 17 N -0.76 -18.85 5.18 -59.90 -0.31 -19.16 16 18 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 19 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 21 N -0.94 -30.33 13.97 55.49 0.78 -29.56 16 22 Si 0.88 23.50 27.74 -169.99 -4.71 18.78 16 23 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 25 H -0.27 -7.09 6.52 56.52 0.37 -6.72 16 26 C 0.12 1.99 5.04 -3.71 -0.02 1.97 16 27 C 0.01 0.12 11.95 29.96 0.36 0.47 16 28 O -0.19 -1.79 10.73 6.51 0.07 -1.72 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.15 1.70 3.63 -79.94 -0.29 1.41 16 35 H 0.06 0.72 6.70 -51.93 -0.35 0.37 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.69 4.99 -51.93 -0.26 0.43 16 41 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.03 0.62 6.72 -51.93 -0.35 0.27 16 43 H 0.36 9.04 4.75 -40.82 -0.19 8.85 16 44 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 45 H 0.07 1.22 6.69 -51.93 -0.35 0.87 16 46 H 0.10 1.97 6.23 -51.93 -0.32 1.64 16 47 H 0.23 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -35.90 366.60 -7.08 -42.98 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.12 Total: 5.86 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.82 Total: 2.11 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.11 Total: -63.15 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.16 Total: -12.11 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -4.71 Total: 18.78 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.90 -7.08 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132756531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.521 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds