Wall clock time and date at job start Tue Mar 31 2020 13:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47243 * 2 1 4 4 N 1.29940 * 125.37881 * 89.99949 * 3 2 1 5 5 C 1.36067 * 108.47754 * 179.97438 * 4 3 2 6 6 C 1.47422 * 126.44654 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99682 * 173.45473 * 6 5 4 8 8 N 1.34773 * 120.00365 * 353.45848 * 6 5 4 9 9 C 1.46932 * 120.62808 * 3.97919 * 8 6 5 10 10 C 1.52763 * 109.00664 * 233.58521 * 9 8 6 11 11 C 1.53036 * 109.38260 * 305.58937 * 10 9 8 12 12 H 1.09002 * 109.45929 * 181.26031 * 11 10 9 13 13 C 1.52999 * 109.44942 * 301.22212 * 11 10 9 14 14 C 1.53040 * 109.53974 * 61.24115 * 11 10 9 15 15 H 1.08995 * 109.49613 * 58.58598 * 14 11 10 16 16 C 1.52997 * 109.49746 * 178.68572 * 14 11 10 17 17 N 1.46500 * 109.47211 * 184.83531 * 16 14 11 18 18 C 1.36938 * 120.00021 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99830 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99695 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00191 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47436 * 90.00025 * 22 20 18 24 24 H 1.48502 * 109.47235 * 210.00426 * 22 20 18 25 25 H 1.48507 * 109.47020 * 329.99933 * 22 20 18 26 26 C 1.46920 * 120.63277 * 184.25979 * 8 6 5 27 27 C 1.36095 * 107.10239 * 359.97438 * 5 4 3 28 28 O 1.34051 * 125.37948 * 269.69053 * 3 2 1 29 29 H 1.09003 * 109.47110 * 59.99883 * 1 2 3 30 30 H 1.09000 * 109.47291 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47231 * 300.00307 * 1 2 3 32 32 H 1.09003 * 109.47110 * 120.00117 * 2 1 3 33 33 H 1.09001 * 109.47231 * 239.99693 * 2 1 3 34 34 H 1.09004 * 109.58682 * 353.41625 * 9 8 6 35 35 H 1.08993 * 109.58749 * 113.84189 * 9 8 6 36 36 H 1.08997 * 109.56407 * 185.54754 * 10 9 8 37 37 H 1.09007 * 109.38632 * 65.51310 * 10 9 8 38 38 H 1.08998 * 109.47533 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47520 * 300.06829 * 13 11 10 40 40 H 1.09007 * 109.46944 * 60.06104 * 13 11 10 41 41 H 1.09011 * 109.47176 * 304.83554 * 16 14 11 42 42 H 1.09005 * 109.47783 * 64.83372 * 16 14 11 43 43 H 0.96996 * 119.99850 * 359.97438 * 17 16 14 44 44 H 0.97007 * 119.99529 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58658 * 246.15241 * 26 8 6 46 46 H 1.09004 * 109.58853 * 6.57622 * 26 8 6 47 47 H 1.07993 * 126.52175 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2831 2.1300 1.0595 5 6 2.7176 3.3573 0.6639 6 6 3.1116 4.4725 1.5439 7 8 3.5961 5.4810 1.0675 8 7 2.9348 4.3743 2.8764 9 6 2.4321 3.1303 3.4752 10 6 1.2142 3.4510 4.3399 11 6 1.5840 4.5337 5.3563 12 1 0.7223 4.7476 5.9887 13 6 2.7439 4.0425 6.2246 14 6 2.0032 5.8071 4.6181 15 1 1.1859 6.1435 3.9803 16 6 2.3412 6.8990 5.6351 17 7 2.6305 8.1502 4.9301 18 6 2.9603 9.2748 5.6385 19 1 3.0074 9.2392 6.7169 20 6 3.2339 10.4604 4.9705 21 7 3.5514 11.5412 5.6514 22 14 3.1517 10.5221 3.1054 23 1 1.7768 10.8910 2.6824 24 1 4.1134 11.5349 2.6007 25 1 3.4996 9.1894 2.5502 26 6 3.2353 5.5112 3.7572 27 6 2.7201 3.3615 -0.6971 28 8 2.2966 2.1505 -1.0929 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 2.1454 2.4348 2.6863 35 1 3.2092 2.6830 4.0949 36 1 0.8934 2.5521 4.8662 37 1 0.4040 3.8096 3.7049 38 1 3.0073 4.8131 6.9491 39 1 2.4456 3.1355 6.7505 40 1 3.6059 3.8289 5.5925 41 1 1.4937 7.0469 6.3047 42 1 3.2140 6.5984 6.2147 43 1 2.5885 8.1821 3.9615 44 1 3.7430 12.3697 5.1845 45 1 4.0792 5.2620 4.4004 46 1 3.4786 6.3862 3.1544 47 1 3.0111 4.1815 -1.3367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132756531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:58 Heat of formation + Delta-G solvation = -20.154939 kcal Electronic energy + Delta-G solvation = -28062.933403 eV Core-core repulsion = 24246.976399 eV Total energy + Delta-G solvation = -3815.957004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.58269 -41.45924 -39.37418 -36.90426 -36.19516 -35.02262 -34.62639 -33.69951 -31.89380 -30.60224 -28.81405 -27.79944 -26.19473 -25.28297 -24.63834 -24.32453 -22.63732 -22.39550 -21.07337 -20.01797 -19.23264 -18.49874 -18.01731 -17.74640 -17.15468 -16.81131 -16.29144 -16.20631 -15.97927 -15.67653 -15.55146 -15.18439 -14.97405 -14.65154 -14.52811 -14.46725 -14.22704 -13.89529 -13.57395 -13.48979 -13.30177 -13.00327 -12.72413 -12.60969 -12.49291 -12.43194 -12.25793 -12.14935 -12.00719 -11.89352 -11.85613 -11.60943 -11.50866 -11.32415 -11.02370 -10.55106 -10.18421 -9.63188 -9.32874 -8.07913 -5.39859 -0.00909 0.85505 1.31573 1.34633 1.41923 1.49622 1.82194 2.10021 2.42035 2.71339 3.23923 3.42841 3.51699 3.71429 3.78802 3.81460 3.96285 4.09329 4.21066 4.26281 4.27734 4.31491 4.35937 4.48161 4.50158 4.53151 4.62848 4.72532 4.75475 4.82775 4.87945 4.92583 5.02956 5.04447 5.07029 5.14020 5.18545 5.24901 5.29085 5.37619 5.39755 5.53931 5.71820 5.73977 6.17054 6.20422 6.45473 6.93463 7.02566 7.79784 7.96957 9.13691 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.003509 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.987718 B = 7977.065083 C = 9240.701423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C 0.210 3.790 4 N -0.470 5.470 5 C -0.090 4.090 6 C 0.586 3.414 7 O -0.582 6.582 8 N -0.587 5.587 9 C 0.058 3.942 10 C -0.116 4.116 11 C -0.081 4.081 12 H 0.083 0.917 13 C -0.149 4.149 14 C -0.093 4.093 15 H 0.059 0.941 16 C 0.163 3.837 17 N -0.762 5.762 18 C -0.230 4.230 19 H 0.064 0.936 20 C -0.057 4.057 21 N -0.980 5.980 22 Si 0.944 3.056 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.267 1.267 26 C 0.122 3.878 27 C 0.026 3.974 28 O -0.191 6.191 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.160 0.840 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.033 0.967 42 H 0.035 0.965 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 -33.253 -12.446 36.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 C 0.002 3.998 4 N -0.200 5.200 5 C -0.208 4.208 6 C 0.374 3.626 7 O -0.463 6.463 8 N -0.317 5.317 9 C -0.063 4.063 10 C -0.154 4.154 11 C -0.100 4.100 12 H 0.101 0.899 13 C -0.206 4.206 14 C -0.113 4.113 15 H 0.077 0.923 16 C 0.037 3.963 17 N -0.407 5.407 18 C -0.361 4.361 19 H 0.082 0.918 20 C -0.249 4.249 21 N -0.630 5.630 22 Si 0.772 3.228 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.193 1.193 26 C -0.001 4.001 27 C -0.048 4.048 28 O -0.077 6.077 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.176 0.824 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.194 0.806 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.952 -32.860 -11.871 35.623 hybrid contribution 0.441 1.733 -1.413 2.279 sum -6.511 -31.127 -13.284 34.464 Atomic orbital electron populations 1.21800 0.92287 1.04398 1.02298 1.20488 0.97267 0.81319 1.07471 1.27517 0.96681 0.97847 0.77765 1.70163 1.18173 1.02497 1.29192 1.21479 1.11660 0.94238 0.93444 1.17329 0.78006 0.85006 0.82243 1.90826 1.47239 1.32509 1.75728 1.48033 1.63132 1.15562 1.04996 1.23165 0.96489 0.85640 1.01017 1.21795 0.97114 0.99514 0.96955 1.21090 0.99444 0.92808 0.96638 0.89890 1.21951 0.97662 1.01705 0.99279 1.21603 0.96819 0.96277 0.96588 0.92260 1.20857 0.98092 0.83697 0.93689 1.42870 1.85094 1.07986 1.04790 1.19072 1.37130 0.87967 0.91918 0.91771 1.25352 1.02377 0.95485 1.01642 1.69855 1.55843 1.01296 1.36052 0.85574 0.77747 0.77513 0.81953 1.20310 1.21700 1.19276 1.21563 0.97804 0.88547 0.92178 1.25609 0.97101 0.87044 0.95094 1.84442 1.63222 1.22093 1.37911 0.92680 0.88475 0.92736 0.85748 0.86290 0.82441 0.90908 0.87621 0.92795 0.93119 0.90263 0.92957 0.94917 0.94675 0.80618 0.93246 0.90553 0.92549 0.73593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 71.98 0.71 0.04 16 2 C -0.03 -0.14 6.56 29.84 0.20 0.06 16 3 C 0.21 3.01 7.56 88.39 0.67 3.68 16 4 N -0.47 -9.28 7.68 -293.03 -2.25 -11.53 16 5 C -0.09 -2.24 6.75 40.41 0.27 -1.97 16 6 C 0.59 19.21 7.69 86.66 0.67 19.88 16 7 O -0.58 -23.67 16.33 -4.06 -0.07 -23.74 16 8 N -0.59 -17.66 2.98 -823.61 -2.45 -20.11 16 9 C 0.06 1.27 5.82 86.22 0.50 1.77 16 10 C -0.12 -2.25 5.61 30.53 0.17 -2.08 16 11 C -0.08 -1.89 2.71 -10.77 -0.03 -1.92 16 12 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 13 C -0.15 -3.17 8.11 71.98 0.58 -2.58 16 14 C -0.09 -3.02 2.15 -10.72 -0.02 -3.04 16 15 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 16 C 0.16 6.48 5.19 86.38 0.45 6.93 16 17 N -0.76 -38.53 5.18 -343.44 -1.78 -40.31 16 18 C -0.23 -13.82 10.47 84.03 0.88 -12.94 16 19 H 0.06 4.12 8.06 -2.91 -0.02 4.10 16 20 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 21 N -0.98 -65.14 13.97 21.65 0.30 -64.84 16 22 Si 0.94 49.82 27.74 68.60 1.90 51.72 16 23 H -0.28 -14.16 7.11 99.48 0.71 -13.46 16 24 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 25 H -0.27 -13.76 6.52 99.48 0.65 -13.12 16 26 C 0.12 4.21 5.04 86.36 0.44 4.65 16 27 C 0.03 0.50 11.95 67.32 0.80 1.31 16 28 O -0.19 -3.07 10.73 0.38 0.00 -3.06 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.16 3.26 3.63 -57.70 -0.21 3.06 16 35 H 0.07 1.47 6.70 -2.39 -0.02 1.45 16 36 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.05 1.22 6.57 -2.39 -0.02 1.20 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 1.16 4.99 -2.38 -0.01 1.15 16 41 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.04 1.39 6.72 -2.38 -0.02 1.38 16 43 H 0.36 18.32 4.75 -92.71 -0.44 17.88 16 44 H 0.26 16.37 8.31 -92.70 -0.77 15.60 16 45 H 0.08 2.55 6.69 -2.39 -0.02 2.54 16 46 H 0.06 2.41 6.23 -2.39 -0.01 2.39 16 47 H 0.25 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -80.53 366.60 2.71 -77.82 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.29 Total: 23.33 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.76 Total: 10.72 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -6.18 Total: -136.79 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.06 Total: -26.80 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 1.90 Total: 51.72 kcal Total: -80.53 2.71 -77.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132756531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.670 kcal (2) G-P(sol) polarization free energy of solvation -80.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds