Wall clock time and date at job start Tue Mar 31 2020 12:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30254 * 125.61584 * 2 1 4 4 C 1.34477 * 108.70024 * 179.78017 * 3 2 1 5 5 C 1.34334 * 107.66587 * 0.39379 * 4 3 2 6 6 C 1.50699 * 126.44282 * 179.87966 * 5 4 3 7 7 C 1.50699 * 109.47190 * 89.70844 * 6 5 4 8 8 O 1.21281 * 120.00382 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99881 * 179.97438 * 7 6 5 10 10 C 1.46929 * 120.63328 * 0.02562 * 9 7 6 11 11 C 1.53196 * 108.77486 * 233.60825 * 10 9 7 12 12 C 1.53035 * 109.30995 * 305.36045 * 11 10 9 13 13 H 1.09004 * 109.45792 * 181.38956 * 12 11 10 14 14 C 1.53000 * 109.46239 * 301.34363 * 12 11 10 15 15 C 1.53042 * 109.54021 * 61.36728 * 12 11 10 16 16 H 1.09004 * 109.49547 * 58.61806 * 15 12 11 17 17 C 1.52994 * 109.49646 * 178.67720 * 15 12 11 18 18 N 1.46504 * 109.47011 * 184.99712 * 17 15 12 19 19 C 1.36933 * 120.00275 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99952 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00229 * 180.02562 * 19 18 17 22 22 N 1.31609 * 119.99697 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99893 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47204 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46695 * 119.99868 * 23 21 19 26 26 H 1.48498 * 109.47459 * 239.99777 * 23 21 19 27 27 C 1.46924 * 120.63263 * 180.02562 * 9 7 6 28 28 O 1.33961 * 125.61849 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.47030 * 269.97305 * 1 2 3 30 30 H 1.08996 * 109.47385 * 29.97039 * 1 2 3 31 31 H 1.08999 * 109.46938 * 149.97381 * 1 2 3 32 32 H 1.08000 * 126.16845 * 180.27694 * 4 3 2 33 33 H 1.09006 * 109.46963 * 329.71420 * 6 5 4 34 34 H 1.08999 * 109.47209 * 209.71127 * 6 5 4 35 35 H 1.08998 * 109.59209 * 113.81639 * 10 9 7 36 36 H 1.09003 * 109.58217 * 353.38921 * 10 9 7 37 37 H 1.09001 * 109.49651 * 65.31212 * 11 10 9 38 38 H 1.09001 * 109.49244 * 185.40784 * 11 10 9 39 39 H 1.09004 * 109.46972 * 60.00711 * 14 12 11 40 40 H 1.09005 * 109.47214 * 179.97438 * 14 12 11 41 41 H 1.08998 * 109.47004 * 300.00321 * 14 12 11 42 42 H 1.08996 * 109.48084 * 305.00156 * 17 15 12 43 43 H 1.09008 * 109.47069 * 65.00760 * 17 15 12 44 44 H 0.96998 * 120.00077 * 0.02562 * 18 17 15 45 45 H 0.97003 * 119.99864 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.58511 * 6.60547 * 27 9 7 47 47 H 1.09005 * 109.70744 * 246.25091 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0049 5 6 3.5698 -0.6756 -0.0009 6 6 4.7937 -1.5548 -0.0010 7 6 5.2016 -1.8481 1.4198 8 8 4.5613 -1.3889 2.3418 9 7 6.2775 -2.6217 1.6660 10 6 7.0629 -3.1857 0.5597 11 6 7.1709 -4.7014 0.7543 12 6 7.7421 -4.9938 2.1436 13 1 7.8431 -6.0712 2.2753 14 6 9.1154 -4.3331 2.2796 15 6 6.7996 -4.4356 3.2124 16 1 5.8143 -4.8882 3.1008 17 6 7.3549 -4.7574 4.6012 18 7 6.3953 -4.3289 5.6220 19 6 6.6782 -4.5153 6.9488 20 1 7.6088 -4.9778 7.2428 21 6 5.7687 -4.1098 7.9160 22 7 4.6344 -3.5466 7.5578 23 14 6.1543 -4.3647 9.7259 24 1 7.4827 -5.0142 9.8623 25 1 6.1729 -3.0508 10.4178 26 1 5.1142 -5.2310 10.3365 27 6 6.6873 -2.9171 3.0456 28 8 2.2872 -1.0890 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5133 31 1 -0.3633 -0.8898 -0.5142 32 1 4.4156 1.3163 0.0103 33 1 5.6081 -1.0438 -0.5146 34 1 4.5696 -2.4895 -0.5150 35 1 8.0601 -2.7455 0.5578 36 1 6.5657 -2.9733 -0.3868 37 1 6.1819 -5.1510 0.6654 38 1 7.8308 -5.1196 -0.0059 39 1 9.0149 -3.2558 2.1475 40 1 9.5221 -4.5409 3.2694 41 1 9.7871 -4.7315 1.5193 42 1 7.5208 -5.8312 4.6865 43 1 8.2985 -4.2312 4.7461 44 1 5.5596 -3.9132 5.3581 45 1 3.9987 -3.2636 8.2336 46 1 5.9423 -2.5274 3.7394 47 1 7.6532 -2.4547 3.2491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132884445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:29 Heat of formation + Delta-G solvation = -34.565797 kcal Electronic energy + Delta-G solvation = -27638.829216 eV Core-core repulsion = 23822.247310 eV Total energy + Delta-G solvation = -3816.581906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.35291 -41.49163 -39.35407 -36.66137 -35.79903 -34.99387 -34.12438 -33.49074 -31.81439 -31.10733 -28.70579 -27.77130 -26.57063 -25.52081 -24.90392 -23.43609 -22.57741 -22.26509 -20.93757 -19.47517 -18.92739 -18.45715 -18.01504 -17.52616 -16.97781 -16.78572 -16.57683 -16.04126 -15.70709 -15.58026 -15.29007 -15.07407 -14.90748 -14.54823 -14.38656 -14.19008 -14.00529 -13.86228 -13.76615 -13.35048 -13.12094 -13.06577 -12.90660 -12.88790 -12.62772 -12.43714 -12.31832 -12.11620 -11.99460 -11.92665 -11.72065 -11.61468 -11.37363 -11.22033 -10.97157 -10.92857 -9.68280 -9.60105 -9.03564 -7.97489 -5.28098 0.36042 1.42805 1.45084 1.52789 1.55187 1.55237 1.69475 2.07672 2.52922 3.13535 3.35807 3.45417 3.62621 3.76127 3.82893 3.86117 4.00418 4.11168 4.11727 4.20006 4.28650 4.33291 4.41327 4.55490 4.58153 4.59202 4.62879 4.66200 4.75211 4.79234 4.84904 4.92723 4.98133 4.99824 5.04485 5.10756 5.21337 5.26121 5.32291 5.36248 5.42663 5.46065 5.52653 5.63099 6.23106 6.39357 6.68534 7.12109 7.28342 8.05281 8.27001 9.26303 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010628 B = 0.003502 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.816304 B = 7993.928839 C =10154.767292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.181 3.819 3 N -0.517 5.517 4 C -0.041 4.041 5 C -0.043 4.043 6 C -0.040 4.040 7 C 0.501 3.499 8 O -0.593 6.593 9 N -0.602 5.602 10 C 0.094 3.906 11 C -0.124 4.124 12 C -0.080 4.080 13 H 0.077 0.923 14 C -0.149 4.149 15 C -0.090 4.090 16 H 0.046 0.954 17 C 0.158 3.842 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.080 0.920 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.977 3.023 24 H -0.261 1.261 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.130 3.870 28 O -0.214 6.214 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.201 0.799 33 H 0.173 0.827 34 H 0.144 0.856 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.059 0.941 38 H 0.114 0.886 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.023 0.977 43 H 0.031 0.969 44 H 0.369 0.631 45 H 0.250 0.750 46 H 0.042 0.958 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 1.227 -26.598 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.025 4.025 3 N -0.247 5.247 4 C -0.179 4.179 5 C -0.096 4.096 6 C -0.079 4.079 7 C 0.290 3.710 8 O -0.473 6.473 9 N -0.334 5.334 10 C -0.027 4.027 11 C -0.162 4.162 12 C -0.099 4.099 13 H 0.095 0.905 14 C -0.206 4.206 15 C -0.109 4.109 16 H 0.065 0.935 17 C 0.032 3.968 18 N -0.392 5.392 19 C -0.376 4.376 20 H 0.098 0.902 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.806 3.194 24 H -0.185 1.185 25 H -0.222 1.222 26 H -0.220 1.220 27 C 0.006 3.994 28 O -0.102 6.102 29 H 0.116 0.884 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.218 0.782 33 H 0.190 0.810 34 H 0.162 0.838 35 H 0.114 0.886 36 H 0.140 0.860 37 H 0.078 0.922 38 H 0.133 0.867 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.041 0.959 43 H 0.048 0.952 44 H 0.200 0.800 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.558 1.959 -26.001 26.317 hybrid contribution -0.301 -0.458 1.864 1.942 sum 3.257 1.502 -24.138 24.403 Atomic orbital electron populations 1.20526 0.78403 1.06800 1.05647 1.27249 0.98083 0.78143 0.99014 1.70410 1.02916 1.31273 1.20149 1.23398 0.95514 0.93517 1.05508 1.23059 0.83700 0.95375 1.07445 1.20286 0.92124 1.02057 0.93460 1.21208 0.79742 0.78098 0.91984 1.90803 1.54553 1.53489 1.48442 1.48211 1.28329 1.49137 1.07772 1.22307 0.97339 0.94044 0.88979 1.21965 1.02164 0.95531 0.96577 1.21077 0.94675 1.00373 0.93824 0.90481 1.21962 0.95587 1.00888 1.02181 1.21540 0.99330 0.94737 0.95316 0.93497 1.20889 0.92241 0.96600 0.87074 1.42715 1.20905 1.73173 1.02393 1.19715 1.01987 1.31734 0.84168 0.90214 1.25676 0.96750 1.02102 1.02716 1.69883 1.10721 1.48402 1.33437 0.85020 0.77777 0.76871 0.79780 1.18462 1.22179 1.21976 1.21334 0.99700 0.95577 0.82746 1.84354 1.17275 1.38515 1.70032 0.88447 0.86480 0.87204 0.78239 0.80955 0.83842 0.88646 0.86043 0.92179 0.86746 0.92359 0.93720 0.89916 0.95944 0.95155 0.79971 0.94172 0.93917 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.51 71.24 0.75 -0.13 16 2 C 0.18 4.79 8.34 88.34 0.74 5.53 16 3 N -0.52 -15.33 11.29 -303.83 -3.43 -18.77 16 4 C -0.04 -1.11 11.80 83.40 0.98 -0.13 16 5 C -0.04 -1.10 5.88 24.79 0.15 -0.96 16 6 C -0.04 -0.70 4.60 29.10 0.13 -0.56 16 7 C 0.50 14.66 7.69 87.66 0.67 15.33 16 8 O -0.59 -25.99 15.45 -3.03 -0.05 -26.04 16 9 N -0.60 -15.11 2.97 -818.91 -2.43 -17.55 16 10 C 0.09 1.17 5.87 86.36 0.51 1.68 16 11 C -0.12 -1.67 5.63 30.67 0.17 -1.50 16 12 C -0.08 -1.67 2.71 -10.77 -0.03 -1.70 16 13 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 14 C -0.15 -2.67 8.11 71.98 0.58 -2.09 16 15 C -0.09 -2.90 2.15 -10.72 -0.02 -2.93 16 16 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 17 C 0.16 6.46 5.19 86.38 0.45 6.91 16 18 N -0.75 -40.71 5.38 -343.44 -1.85 -42.55 16 19 C -0.24 -14.34 9.99 84.04 0.84 -13.50 16 20 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 21 C -0.08 -4.90 5.50 84.86 0.47 -4.44 16 22 N -0.97 -64.24 13.06 21.65 0.28 -63.96 16 23 Si 0.98 48.33 29.55 68.60 2.03 50.36 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 26 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 27 C 0.13 4.43 5.05 86.36 0.44 4.86 16 28 O -0.21 -6.15 10.78 -3.69 -0.04 -6.19 16 29 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.11 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.20 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.17 1.28 7.94 -2.38 -0.02 1.26 16 34 H 0.14 1.60 7.69 -2.39 -0.02 1.58 16 35 H 0.10 0.90 6.69 -2.39 -0.02 0.88 16 36 H 0.12 0.59 5.93 -2.39 -0.01 0.57 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 1.04 4.98 -2.39 -0.01 1.03 16 40 H 0.04 0.98 6.57 -2.38 -0.02 0.96 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 43 H 0.03 1.21 6.73 -2.38 -0.02 1.19 16 44 H 0.37 22.14 6.90 -92.71 -0.64 21.50 16 45 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 46 H 0.04 1.99 6.22 -2.39 -0.01 1.97 16 47 H 0.07 2.40 6.70 -2.38 -0.02 2.39 16 Total: -1.00 -90.92 372.66 1.68 -89.24 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.35 Total: 29.07 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 6.83 Total: 6.39 kcal Atomic # 7 Polarization: -135.40 SS G_CDS: -7.43 Total: -142.83 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.09 Total: -32.23 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -90.92 1.68 -89.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132884445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.674 kcal (2) G-P(sol) polarization free energy of solvation -90.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds