Wall clock time and date at job start Tue Mar 31 2020 13:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47160 * 2 1 4 4 N 1.30017 * 127.33891 * 90.02886 * 3 2 1 5 5 O 1.20650 * 112.30487 * 179.74090 * 4 3 2 6 6 C 1.33494 * 113.15692 * 359.97438 * 5 4 3 7 7 C 1.37358 * 106.34097 * 0.02562 * 6 5 4 8 8 C 1.47402 * 128.56400 * 180.02562 * 7 6 5 9 9 O 1.21606 * 119.99943 * 132.39780 * 8 7 6 10 10 N 1.34775 * 119.99851 * 312.39383 * 8 7 6 11 11 C 1.46926 * 120.63057 * 3.99823 * 10 8 7 12 12 C 1.52763 * 109.00583 * 233.58278 * 11 10 8 13 13 C 1.53046 * 109.38377 * 305.58566 * 12 11 10 14 14 H 1.09001 * 109.46252 * 181.26383 * 13 12 11 15 15 C 1.53003 * 109.45777 * 301.22075 * 13 12 11 16 16 C 1.53038 * 109.53859 * 61.23991 * 13 12 11 17 17 H 1.09000 * 109.49422 * 58.58332 * 16 13 12 18 18 C 1.52989 * 109.52505 * 178.66867 * 16 13 12 19 19 N 1.46497 * 109.47333 * 184.85175 * 18 16 13 20 20 C 1.36943 * 120.00392 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99378 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00031 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00430 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00084 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46687 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47222 * 120.00204 * 24 22 20 27 27 H 1.48497 * 109.47034 * 240.00567 * 24 22 20 28 28 C 1.46929 * 120.63368 * 184.27185 * 10 8 7 29 29 H 1.09003 * 109.47412 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47104 * 299.99706 * 1 2 3 31 31 H 1.08995 * 109.47585 * 59.99716 * 1 2 3 32 32 H 1.09001 * 109.47104 * 240.00294 * 2 1 3 33 33 H 1.08995 * 109.47585 * 120.00283 * 2 1 3 34 34 H 1.08002 * 126.83100 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.58817 * 353.41278 * 11 10 8 36 36 H 1.08994 * 109.59092 * 113.84518 * 11 10 8 37 37 H 1.09006 * 109.56612 * 185.55318 * 12 11 10 38 38 H 1.09001 * 109.38936 * 65.50919 * 12 11 10 39 39 H 1.08997 * 109.47106 * 180.02562 * 15 13 12 40 40 H 1.09004 * 109.47218 * 300.07042 * 15 13 12 41 41 H 1.08996 * 109.47017 * 60.06391 * 15 13 12 42 42 H 1.08998 * 109.47245 * 304.85605 * 18 16 13 43 43 H 1.09003 * 109.47097 * 64.85547 * 18 16 13 44 44 H 0.97003 * 119.99967 * 0.02562 * 19 18 16 45 45 H 0.96999 * 119.99787 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.58722 * 246.16261 * 28 10 8 47 47 H 1.09002 * 109.57911 * 6.58085 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2956 2.1641 1.0337 5 8 2.6886 3.2610 0.7208 6 6 2.7555 3.4375 -0.6008 7 6 2.3355 2.2599 -1.1696 8 6 2.2185 1.9203 -2.5992 9 8 2.6696 0.8698 -3.0136 10 7 1.6113 2.7742 -3.4471 11 6 1.1391 4.0845 -2.9793 12 6 -0.3368 4.2398 -3.3419 13 6 -0.5184 4.0051 -4.8433 14 1 -1.5676 4.1377 -5.1073 15 6 0.3338 5.0087 -5.6228 16 6 -0.0799 2.5818 -5.1956 17 1 -0.6699 1.8670 -4.6220 18 6 -0.2927 2.3365 -6.6906 19 7 0.0176 0.9398 -7.0054 20 6 -0.1017 0.4849 -8.2915 21 1 -0.4241 1.1560 -9.0739 22 6 0.1918 -0.8386 -8.5895 23 7 0.5842 -1.6567 -7.6359 24 14 0.0298 -1.4590 -10.3441 25 1 -0.4244 -0.3501 -11.2212 26 1 1.3468 -1.9559 -10.8170 27 1 -0.9613 -2.5639 -10.3889 28 6 1.4038 2.4100 -4.8553 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.0760 4.3288 -1.1196 35 1 1.2571 4.1507 -1.8978 36 1 1.7158 4.8740 -3.4609 37 1 -0.6711 5.2457 -3.0879 38 1 -0.9248 3.5096 -2.7858 39 1 0.2042 4.8420 -6.6921 40 1 0.0217 6.0225 -5.3720 41 1 1.3831 4.8760 -5.3595 42 1 -1.3309 2.5452 -6.9489 43 1 0.3631 2.9923 -7.2634 44 1 0.3068 0.3370 -6.3026 45 1 0.7896 -2.5815 -7.8444 46 1 2.0027 3.0602 -5.4930 47 1 1.6966 1.3716 -5.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133096029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:35 Heat of formation + Delta-G solvation = 8.040790 kcal Electronic energy + Delta-G solvation = -28328.426575 eV Core-core repulsion = 24513.692229 eV Total energy + Delta-G solvation = -3814.734346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.00913 -41.48696 -39.31405 -36.68090 -36.32337 -35.06986 -33.52972 -33.23799 -32.30284 -31.42228 -28.78289 -27.65087 -26.32932 -25.53535 -24.91568 -24.48937 -22.61469 -21.90857 -21.32480 -19.73424 -18.95711 -18.84721 -18.48088 -17.85955 -17.24337 -16.78049 -16.38159 -16.15538 -15.79078 -15.65078 -15.34326 -15.28022 -14.97438 -14.54640 -14.54325 -14.29773 -14.03456 -13.78487 -13.70717 -13.08151 -13.04074 -12.88747 -12.73541 -12.62419 -12.60457 -12.43471 -12.12115 -12.03817 -11.99088 -11.90537 -11.73949 -11.42423 -11.24493 -11.19729 -10.99539 -10.94275 -10.61404 -9.65579 -9.00025 -7.94555 -5.24742 0.18071 0.70909 1.45516 1.47106 1.49760 1.57240 1.88324 2.24250 2.55376 2.91922 3.26711 3.38904 3.53244 3.71410 3.79851 3.84606 3.92217 4.07244 4.13514 4.18485 4.21092 4.25829 4.29714 4.39243 4.51433 4.55458 4.58349 4.68930 4.75583 4.78431 4.83786 4.86797 4.92284 4.98964 5.01911 5.11335 5.15343 5.19059 5.26925 5.31957 5.41138 5.46814 5.49808 5.63031 6.26282 6.29803 7.00272 7.17963 7.31923 8.08663 8.30190 9.29115 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.003605 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.846876 B = 7765.179282 C = 8990.837848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 C 0.052 3.948 4 N -0.369 5.369 5 O 0.108 5.892 6 C 0.023 3.977 7 C -0.269 4.269 8 C 0.587 3.413 9 O -0.578 6.578 10 N -0.593 5.593 11 C 0.089 3.911 12 C -0.123 4.123 13 C -0.079 4.079 14 H 0.078 0.922 15 C -0.149 4.149 16 C -0.090 4.090 17 H 0.047 0.953 18 C 0.160 3.840 19 N -0.749 5.749 20 C -0.243 4.243 21 H 0.080 0.920 22 C -0.078 4.078 23 N -0.972 5.972 24 Si 0.974 3.026 25 H -0.262 1.262 26 H -0.295 1.295 27 H -0.294 1.294 28 C 0.131 3.869 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.278 0.722 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.033 0.967 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.081 0.919 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 19.761 17.017 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.092 4.092 3 C -0.110 4.110 4 N -0.075 5.075 5 O 0.047 5.953 6 C -0.058 4.058 7 C -0.276 4.276 8 C 0.375 3.625 9 O -0.458 6.458 10 N -0.325 5.325 11 C -0.032 4.032 12 C -0.161 4.161 13 C -0.098 4.098 14 H 0.096 0.904 15 C -0.206 4.206 16 C -0.110 4.110 17 H 0.065 0.935 18 C 0.033 3.967 19 N -0.391 5.391 20 C -0.375 4.375 21 H 0.097 0.903 22 C -0.270 4.270 23 N -0.623 5.623 24 Si 0.803 3.197 25 H -0.186 1.186 26 H -0.222 1.222 27 H -0.221 1.221 28 C 0.009 3.991 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.293 0.707 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.099 0.901 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.856 19.109 17.935 26.221 hybrid contribution 0.062 -1.672 -1.843 2.489 sum 0.918 17.437 16.092 23.745 Atomic orbital electron populations 1.21646 0.92757 1.03319 1.01808 1.20050 0.97404 0.87677 1.04105 1.24953 1.00174 0.99136 0.86727 1.73643 1.17018 0.93335 1.23458 1.84545 1.61231 1.25857 1.23706 1.27159 0.96380 0.99544 0.82745 1.22096 1.14568 0.96939 0.94017 1.17349 0.77776 0.82977 0.84359 1.90855 1.49784 1.26679 1.78465 1.48055 1.56874 1.18127 1.09396 1.22336 0.96150 0.82964 1.01726 1.21865 0.95591 1.03951 0.94712 1.21069 1.00749 0.91925 0.96105 0.90375 1.21965 0.99855 0.99065 0.99739 1.21546 0.95033 0.98781 0.95604 0.93459 1.20868 0.97355 0.85116 0.93347 1.42699 1.81404 1.07901 1.07118 1.19699 1.36397 0.94125 0.87286 0.90254 1.25626 1.02963 0.96881 1.01563 1.69874 1.54028 1.05140 1.33244 0.85057 0.76689 0.78114 0.79812 1.18560 1.22206 1.22127 1.21448 0.96477 1.00776 0.80434 0.90375 0.91344 0.93951 0.90871 0.88367 0.70662 0.87777 0.87518 0.86722 0.92945 0.93409 0.89906 0.92178 0.95943 0.94893 0.79850 0.94171 0.90059 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.89 71.98 0.71 -2.35 16 2 C -0.05 -1.36 6.54 29.85 0.20 -1.16 16 3 C 0.05 1.31 6.84 45.16 0.31 1.61 16 4 N -0.37 -8.44 12.01 -44.78 -0.54 -8.97 16 5 O 0.11 1.83 11.06 76.99 0.85 2.68 16 6 C 0.02 0.31 10.02 67.61 0.68 0.98 16 7 C -0.27 -6.30 5.53 -18.74 -0.10 -6.40 16 8 C 0.59 18.28 7.66 86.66 0.66 18.95 16 9 O -0.58 -24.87 16.25 -4.05 -0.07 -24.94 16 10 N -0.59 -15.30 2.98 -823.64 -2.45 -17.75 16 11 C 0.09 1.24 5.46 86.22 0.47 1.71 16 12 C -0.12 -1.81 5.61 30.53 0.17 -1.63 16 13 C -0.08 -1.62 2.71 -10.76 -0.03 -1.64 16 14 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 15 C -0.15 -2.51 8.11 71.98 0.58 -1.93 16 16 C -0.09 -2.83 2.15 -10.72 -0.02 -2.85 16 17 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 18 C 0.16 6.28 5.19 86.38 0.45 6.73 16 19 N -0.75 -39.44 5.38 -343.48 -1.85 -41.29 16 20 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 22 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 23 N -0.97 -62.71 13.06 21.65 0.28 -62.42 16 24 Si 0.97 47.47 29.55 68.60 2.03 49.50 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 28 C 0.13 4.32 5.04 86.36 0.44 4.76 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 2.21 7.85 -2.39 -0.02 2.20 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.28 0.44 7.55 -2.91 -0.02 0.41 16 35 H 0.10 1.00 4.48 -2.39 -0.01 0.99 16 36 H 0.11 0.93 6.70 -2.39 -0.02 0.91 16 37 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.98 6.57 -2.39 -0.02 0.96 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.98 4.99 -2.39 -0.01 0.97 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.03 1.25 6.73 -2.39 -0.02 1.24 16 44 H 0.37 21.47 6.89 -92.71 -0.64 20.83 16 45 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 46 H 0.08 2.48 6.69 -2.39 -0.02 2.46 16 47 H 0.05 2.21 6.23 -2.39 -0.01 2.20 16 Total: -1.00 -81.38 370.11 4.43 -76.95 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.35 Total: 26.78 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 5.82 Total: -0.55 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -4.55 Total: -130.43 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.79 Total: -22.26 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -81.38 4.43 -76.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133096029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.993 kcal (2) G-P(sol) polarization free energy of solvation -81.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds