Wall clock time and date at job start Tue Mar 31 2020 13:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47165 * 2 1 4 4 N 1.29943 * 125.38167 * 90.31389 * 3 2 1 5 5 C 1.36061 * 108.47943 * 180.11656 * 4 3 2 6 6 C 1.47421 * 126.44505 * 179.85510 * 5 4 3 7 7 O 1.21612 * 120.00003 * 179.68941 * 6 5 4 8 8 N 1.34776 * 119.99933 * 359.69110 * 6 5 4 9 9 C 1.48415 * 127.82855 * 0.02575 * 8 6 5 10 10 C 1.54385 * 104.48688 * 219.58494 * 9 8 6 11 11 H 1.09002 * 110.34590 * 95.02774 * 10 9 8 12 12 C 1.52997 * 110.34047 * 217.17999 * 10 9 8 13 13 C 1.54281 * 105.05132 * 336.10309 * 10 9 8 14 14 C 1.53001 * 110.34241 * 241.18419 * 13 10 9 15 15 C 1.53003 * 110.34526 * 119.03372 * 13 10 9 16 16 N 1.46505 * 109.47191 * 180.02562 * 15 13 10 17 17 C 1.36936 * 119.99643 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00365 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99684 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99833 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00068 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47159 * 90.00038 * 21 19 17 23 23 H 1.48500 * 109.47028 * 210.00162 * 21 19 17 24 24 H 1.48497 * 109.47113 * 330.00295 * 21 19 17 25 25 C 1.48150 * 127.83335 * 179.97438 * 8 6 5 26 26 C 1.36085 * 107.10443 * 359.59667 * 5 4 3 27 27 O 1.34055 * 125.38237 * 269.97452 * 3 2 1 28 28 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47284 * 299.99976 * 1 2 3 30 30 H 1.09007 * 109.47053 * 60.00084 * 1 2 3 31 31 H 1.09001 * 109.47284 * 240.00024 * 2 1 3 32 32 H 1.08998 * 109.47386 * 120.00422 * 2 1 3 33 33 H 1.08997 * 110.44874 * 100.84735 * 9 8 6 34 34 H 1.09004 * 110.48780 * 338.33264 * 9 8 6 35 35 H 1.09005 * 109.47312 * 177.11975 * 12 10 9 36 36 H 1.08998 * 109.47322 * 297.11942 * 12 10 9 37 37 H 1.09005 * 109.47284 * 57.12334 * 12 10 9 38 38 H 1.09001 * 109.47416 * 60.00373 * 14 13 10 39 39 H 1.09004 * 109.47417 * 179.97438 * 14 13 10 40 40 H 1.08998 * 109.47229 * 299.99650 * 14 13 10 41 41 H 1.09001 * 109.46306 * 299.99875 * 15 13 10 42 42 H 1.08995 * 109.46915 * 59.99782 * 15 13 10 43 43 H 0.96995 * 120.00136 * 359.97438 * 16 15 13 44 44 H 0.97001 * 119.99919 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.41112 * 21.62467 * 25 8 6 46 46 H 1.09001 * 110.50499 * 259.24502 * 25 8 6 47 47 H 1.07998 * 126.52714 * 180.26950 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2886 2.1282 1.0594 5 6 2.7180 3.3572 0.6639 6 6 3.1131 4.4719 1.5439 7 8 3.4862 5.5243 1.0620 8 7 3.0608 4.3248 2.8826 9 6 2.6370 3.1278 3.6509 10 6 1.8276 3.6963 4.8363 11 1 0.7630 3.6980 4.6022 12 6 2.0917 2.8780 6.1017 13 6 2.3397 5.1407 5.0150 14 6 2.9593 5.3174 6.4027 15 6 1.1980 6.1388 4.8123 16 7 1.7049 7.5024 4.9855 17 6 0.8581 8.5700 4.8497 18 1 -0.1832 8.4068 4.6145 19 6 1.3382 9.8619 5.0143 20 7 0.5243 10.8881 4.8843 21 14 3.1393 10.1442 5.4218 22 1 3.9158 10.2819 4.1634 23 1 3.2762 11.3849 6.2262 24 1 3.6576 8.9902 6.1994 25 6 3.4143 5.3208 3.9208 26 6 2.7197 3.3617 -0.6970 27 8 2.2915 2.1524 -1.0930 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5069 2.5797 4.0126 34 1 2.0088 2.4828 3.0364 35 1 1.5543 3.3214 6.9400 36 1 1.7486 1.8545 5.9508 37 1 3.1605 2.8750 6.3161 38 1 3.7950 4.6272 6.5182 39 1 3.3164 6.3413 6.5135 40 1 2.2084 5.1097 7.1650 41 1 0.7923 6.0273 3.8067 42 1 0.4133 5.9467 5.5441 43 1 2.6402 7.6490 5.1963 44 1 0.8598 11.7909 4.9989 45 1 3.3729 6.3294 3.5096 46 1 4.4060 5.1162 4.3243 47 1 3.0106 4.1817 -1.3367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181192646.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:22 Heat of formation + Delta-G solvation = 7.399740 kcal Electronic energy + Delta-G solvation = -28112.140934 eV Core-core repulsion = 24297.378790 eV Total energy + Delta-G solvation = -3814.762144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.66618 -40.19108 -38.22333 -35.36471 -34.80289 -34.23697 -33.18549 -31.57980 -30.01088 -29.72029 -27.29064 -26.24550 -25.64925 -24.75430 -23.68365 -22.79631 -21.46569 -20.93697 -19.67278 -18.50705 -17.96125 -17.32916 -17.07149 -16.58745 -15.82051 -15.57890 -15.02027 -14.80881 -14.74612 -14.52150 -13.94907 -13.86133 -13.77455 -13.49209 -13.22101 -13.11105 -12.71234 -12.58753 -12.23453 -12.15244 -11.98519 -11.67879 -11.62289 -11.49603 -11.45520 -11.35045 -11.27632 -10.93921 -10.78737 -10.40730 -10.22694 -10.11941 -10.03744 -9.91729 -9.48912 -9.25393 -8.83302 -8.56195 -7.15528 -5.70238 -3.04941 0.93984 1.80758 2.31065 2.91854 3.30224 3.41499 3.46059 3.50546 3.56656 4.37576 4.47185 4.65465 4.66952 4.68100 4.72479 4.80115 4.88579 4.96071 5.29210 5.29590 5.32075 5.36292 5.39876 5.47969 5.51719 5.54906 5.57604 5.64047 5.72661 5.73574 5.79331 5.81477 5.89130 5.98548 6.06584 6.11262 6.21114 6.34442 6.36807 6.50432 6.60682 6.72227 6.82797 7.23703 7.63346 8.05944 8.17901 8.48766 9.27870 10.00291 10.20206 11.48508 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.003566 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.458751 B = 7850.465935 C = 8627.298167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.026 4.026 3 C 0.194 3.806 4 N -0.456 5.456 5 C -0.059 4.059 6 C 0.616 3.384 7 O -0.532 6.532 8 N -0.602 5.602 9 C 0.100 3.900 10 C -0.098 4.098 11 H 0.082 0.918 12 C -0.140 4.140 13 C -0.081 4.081 14 C -0.135 4.135 15 C 0.174 3.826 16 N -0.753 5.753 17 C -0.240 4.240 18 H 0.089 0.911 19 C 0.004 3.996 20 N -0.936 5.936 21 Si 0.881 3.119 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.112 3.888 26 C 0.010 3.990 27 O -0.196 6.196 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.025 0.975 42 H 0.029 0.971 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -27.364 -7.008 28.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.064 4.064 3 C -0.015 4.015 4 N -0.186 5.186 5 C -0.179 4.179 6 C 0.404 3.596 7 O -0.409 6.409 8 N -0.333 5.333 9 C -0.023 4.023 10 C -0.117 4.117 11 H 0.100 0.900 12 C -0.198 4.198 13 C -0.082 4.082 14 C -0.192 4.192 15 C 0.047 3.953 16 N -0.399 5.399 17 C -0.370 4.370 18 H 0.107 0.893 19 C -0.191 4.191 20 N -0.584 5.584 21 Si 0.711 3.289 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.010 4.010 26 C -0.063 4.063 27 O -0.082 6.082 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.113 0.887 46 H 0.087 0.913 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.290 -26.865 -6.816 28.046 hybrid contribution 1.352 0.790 -0.392 1.615 sum 5.642 -26.075 -7.209 27.635 Atomic orbital electron populations 1.21803 0.92839 1.03116 1.03267 1.20110 0.97042 0.83903 1.05338 1.26441 0.99584 0.96983 0.78496 1.70758 1.15826 1.02712 1.29322 1.21743 1.09271 0.93995 0.92908 1.16277 0.78088 0.85037 0.80228 1.90876 1.48491 1.27162 1.74335 1.48627 1.64328 1.16521 1.03839 1.22865 0.98937 0.87913 0.92571 1.22145 1.00473 0.94152 0.94970 0.89965 1.21878 1.01889 0.98956 0.97045 1.21785 0.96343 0.95018 0.95070 1.21893 1.00217 1.01936 0.95198 1.20623 0.92827 0.83690 0.98168 1.42743 1.08832 1.01474 1.86856 1.19040 0.93324 0.84385 1.40242 0.89341 1.24645 0.97168 0.95366 1.01941 1.69703 1.33989 0.97916 1.56784 0.86598 0.86817 0.77173 0.78279 1.20945 1.21737 1.20304 1.22588 0.97000 0.94374 0.87053 1.25287 0.98862 0.86482 0.95691 1.84381 1.63383 1.22596 1.37879 0.90772 0.91496 0.92062 0.88779 0.87426 0.91559 0.87355 0.91806 0.92927 0.92270 0.92823 0.92074 0.91715 0.95681 0.95298 0.80587 0.93136 0.88672 0.91345 0.75246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.03 -0.14 6.56 -27.89 -0.18 -0.32 16 3 C 0.19 1.87 7.56 -13.08 -0.10 1.77 16 4 N -0.46 -5.52 8.40 -7.66 -0.06 -5.59 16 5 C -0.06 -0.83 6.86 -83.03 -0.57 -1.40 16 6 C 0.62 10.60 7.91 -12.52 -0.10 10.50 16 7 O -0.53 -10.90 17.16 5.27 0.09 -10.81 16 8 N -0.60 -9.57 3.32 -170.33 -0.57 -10.14 16 9 C 0.10 1.26 6.24 -2.26 -0.01 1.24 16 10 C -0.10 -1.23 3.30 -89.22 -0.29 -1.52 16 11 H 0.08 1.08 7.71 -51.93 -0.40 0.68 16 12 C -0.14 -1.38 7.93 37.16 0.29 -1.09 16 13 C -0.08 -1.26 0.73 -153.09 -0.11 -1.38 16 14 C -0.13 -1.93 7.10 37.16 0.26 -1.67 16 15 C 0.17 3.53 4.95 -4.04 -0.02 3.51 16 16 N -0.75 -18.50 4.59 -59.91 -0.28 -18.77 16 17 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 18 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 20 N -0.94 -30.35 13.97 55.49 0.78 -29.57 16 21 Si 0.88 22.93 27.73 -169.99 -4.71 18.21 16 22 H -0.28 -7.43 7.11 56.52 0.40 -7.02 16 23 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 24 H -0.28 -6.66 6.52 56.52 0.37 -6.30 16 25 C 0.11 1.87 5.92 -2.39 -0.01 1.86 16 26 C 0.01 0.12 11.95 29.96 0.36 0.48 16 27 O -0.20 -2.02 10.73 6.50 0.07 -1.95 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 34 H 0.11 1.34 5.48 -51.93 -0.28 1.06 16 35 H 0.06 0.64 6.89 -51.93 -0.36 0.28 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.55 6.69 -51.93 -0.35 0.20 16 38 H 0.05 0.63 6.72 -51.93 -0.35 0.28 16 39 H 0.06 1.01 6.75 -51.93 -0.35 0.66 16 40 H 0.06 0.88 6.84 -51.93 -0.36 0.52 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.36 8.63 3.85 -40.82 -0.16 8.47 16 44 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 45 H 0.09 1.94 6.94 -51.93 -0.36 1.58 16 46 H 0.07 1.01 7.83 -51.93 -0.41 0.61 16 47 H 0.23 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -36.20 372.62 -6.62 -42.82 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.17 Total: 5.78 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.37 Total: 4.41 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.13 Total: -64.07 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.16 Total: -12.76 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.71 Total: 18.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.20 -6.62 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181192646.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.217 kcal (2) G-P(sol) polarization free energy of solvation -36.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds