Wall clock time and date at job start Tue Mar 31 2020 13:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47166 * 2 1 4 4 O 1.34262 * 126.52308 * 269.68787 * 3 2 1 5 5 C 1.34053 * 108.22450 * 179.87178 * 4 3 2 6 6 N 1.29930 * 109.24152 * 0.39922 * 5 4 3 7 7 C 1.36067 * 108.48255 * 359.75613 * 6 5 4 8 8 C 1.47421 * 126.45124 * 180.02562 * 7 6 5 9 9 O 1.21609 * 119.99887 * 173.98915 * 8 7 6 10 10 N 1.34774 * 119.99752 * 353.98916 * 8 7 6 11 11 C 1.46920 * 120.63414 * 4.47414 * 10 8 7 12 12 C 1.52757 * 109.01070 * 233.58241 * 11 10 8 13 13 C 1.53041 * 109.38616 * 305.59009 * 12 11 10 14 14 H 1.09000 * 109.45220 * 301.21633 * 13 12 11 15 15 C 1.52994 * 109.46282 * 181.25627 * 13 12 11 16 16 N 1.46512 * 109.46923 * 64.93163 * 15 13 12 17 17 C 1.36938 * 119.99636 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00387 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99690 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99863 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99919 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46879 * 90.00088 * 21 19 17 23 23 H 1.48493 * 109.47165 * 210.00236 * 21 19 17 24 24 H 1.48497 * 109.47009 * 330.00270 * 21 19 17 25 25 C 1.53040 * 109.53936 * 61.23350 * 13 12 11 26 26 H 1.08994 * 109.52353 * 178.67340 * 25 13 12 27 27 C 1.53002 * 109.49359 * 58.58987 * 25 13 12 28 28 C 1.46929 * 120.62956 * 184.75295 * 10 8 7 29 29 H 1.09000 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46977 * 300.00437 * 1 2 3 31 31 H 1.08995 * 109.47171 * 60.00089 * 1 2 3 32 32 H 1.09000 * 109.46977 * 239.99563 * 2 1 3 33 33 H 1.08998 * 109.46933 * 119.99453 * 2 1 3 34 34 H 1.08001 * 125.37753 * 180.17868 * 5 4 3 35 35 H 1.09002 * 109.58565 * 353.41546 * 11 10 8 36 36 H 1.09001 * 109.58996 * 113.84262 * 11 10 8 37 37 H 1.08997 * 109.56797 * 185.54858 * 12 11 10 38 38 H 1.09004 * 109.38465 * 65.51414 * 12 11 10 39 39 H 1.09001 * 109.47438 * 184.92846 * 15 13 12 40 40 H 1.08999 * 109.47261 * 304.93375 * 15 13 12 41 41 H 0.96994 * 119.99753 * 0.02562 * 16 15 13 42 42 H 0.97000 * 119.99583 * 179.97438 * 20 19 17 43 43 H 1.08993 * 109.47404 * 300.15872 * 27 25 13 44 44 H 1.08995 * 109.47475 * 60.16688 * 27 25 13 45 45 H 1.09011 * 109.46992 * 180.16200 * 27 25 13 46 46 H 1.08997 * 109.58465 * 246.15760 * 28 10 8 47 47 H 1.09005 * 109.58759 * 6.43577 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3043 2.1722 -1.0789 5 6 2.7237 3.3739 -0.6581 6 7 2.7305 3.3942 0.6410 7 6 2.3024 2.1845 1.0936 8 6 2.1576 1.7779 2.5032 9 8 1.6601 0.7027 2.7779 10 7 2.5765 2.5978 3.4874 11 6 3.0892 3.9392 3.1770 12 6 4.4696 4.1032 3.8102 13 6 4.3821 3.7941 5.3065 14 1 3.6645 4.4678 5.7749 15 6 5.7572 3.9882 5.9484 16 7 6.1405 5.3998 5.8644 17 6 7.3403 5.8151 6.3774 18 1 8.0038 5.1023 6.8442 19 6 7.7037 7.1525 6.2973 20 7 6.8949 8.0213 5.7287 21 14 9.3401 7.7193 6.9977 22 1 10.3859 7.6290 5.9473 23 1 9.2209 9.1260 7.4580 24 1 9.7142 6.8532 8.1444 25 6 3.9268 2.3465 5.5044 26 1 3.8872 2.1195 6.5697 27 6 4.9150 1.4020 4.8173 28 6 2.5349 2.1648 4.8909 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.0138 4.1942 -1.2978 35 1 3.1678 4.0592 2.0965 36 1 2.4127 4.6917 3.5821 37 1 4.8164 5.1269 3.6698 38 1 5.1690 3.4140 3.3367 39 1 5.7161 3.6846 6.9945 40 1 6.4929 3.3800 5.4222 41 1 5.5441 6.0402 5.4460 42 1 7.1487 8.9559 5.6731 43 1 4.9551 1.6301 3.7523 44 1 5.9052 1.5315 5.2541 45 1 4.5888 0.3711 4.9561 46 1 1.8123 2.7697 5.4386 47 1 2.2454 1.1151 4.9410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184113283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:27 Heat of formation + Delta-G solvation = 1.681457 kcal Electronic energy + Delta-G solvation = -28097.700229 eV Core-core repulsion = 24282.690122 eV Total energy + Delta-G solvation = -3815.010107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.74283 -40.21009 -38.03429 -35.41655 -34.81076 -34.33485 -33.16427 -31.64416 -30.24542 -29.58855 -27.05699 -26.83870 -24.63409 -23.98575 -23.28142 -22.85114 -21.98331 -21.15893 -20.03946 -18.47491 -17.67847 -17.09709 -17.02118 -16.53519 -15.86879 -15.33292 -15.20409 -14.86672 -14.78067 -14.31995 -13.93300 -13.79626 -13.71593 -13.55635 -13.39567 -12.96536 -12.82081 -12.62997 -12.38282 -12.16592 -11.97830 -11.65425 -11.49461 -11.48187 -11.30314 -11.00472 -10.86130 -10.73920 -10.65562 -10.27974 -10.18791 -10.08690 -9.95272 -9.58499 -9.34982 -9.22128 -8.81385 -8.44660 -6.85700 -5.72702 -3.00228 0.87825 1.80740 2.28461 2.97252 3.21045 3.45563 3.50697 3.52347 3.78304 4.28936 4.47511 4.62310 4.74661 4.88445 4.95409 5.01396 5.07026 5.11372 5.24656 5.40222 5.43620 5.48412 5.53299 5.54902 5.61150 5.75870 5.77393 5.80167 5.84863 5.89900 5.91893 5.97574 6.12293 6.18963 6.29562 6.35167 6.44660 6.50502 6.60636 6.73127 6.79142 6.93660 7.03385 7.18191 7.49972 7.73816 8.11111 8.46879 9.57789 10.17328 10.52133 11.50371 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020661 B = 0.002958 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.906298 B = 9463.681673 C =10331.084933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C 0.042 3.958 4 O -0.198 6.198 5 C 0.177 3.823 6 N -0.456 5.456 7 C -0.067 4.067 8 C 0.599 3.401 9 O -0.545 6.545 10 N -0.583 5.583 11 C 0.059 3.941 12 C -0.121 4.121 13 C -0.091 4.091 14 H 0.070 0.930 15 C 0.159 3.841 16 N -0.732 5.732 17 C -0.236 4.236 18 H 0.069 0.931 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 C -0.097 4.097 26 H 0.081 0.919 27 C -0.144 4.144 28 C 0.116 3.884 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.256 0.744 35 H 0.151 0.849 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.016 0.984 40 H 0.020 0.980 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.067 0.933 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.424 -14.941 -13.917 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.015 4.015 4 O -0.084 6.084 5 C -0.050 4.050 6 N -0.185 5.185 7 C -0.186 4.186 8 C 0.386 3.614 9 O -0.424 6.424 10 N -0.313 5.313 11 C -0.063 4.063 12 C -0.159 4.159 13 C -0.110 4.110 14 H 0.088 0.912 15 C 0.031 3.969 16 N -0.376 5.376 17 C -0.367 4.367 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.117 4.117 26 H 0.099 0.901 27 C -0.202 4.202 28 C -0.006 4.006 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.272 0.728 35 H 0.167 0.833 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.038 0.962 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.346 -14.983 -13.318 24.083 hybrid contribution 0.786 0.564 -0.089 0.972 sum -12.560 -14.419 -13.408 23.354 Atomic orbital electron populations 1.21698 0.93029 1.02858 1.02502 1.20346 0.97142 0.85382 1.05245 1.23759 0.98757 0.95683 0.83256 1.84380 1.63685 1.24110 1.36261 1.28279 0.98264 0.86842 0.91610 1.70355 1.17879 1.20883 1.09342 1.21518 1.09988 0.91429 0.95649 1.16746 0.78382 0.83678 0.82549 1.90749 1.45929 1.22698 1.83002 1.47890 1.61068 1.16232 1.06129 1.23022 0.94996 0.81235 1.07018 1.21823 0.95884 1.03223 0.95002 1.21335 0.98717 0.94717 0.96183 0.91199 1.20711 0.92081 0.87698 0.96380 1.42389 1.21027 1.02992 1.71179 1.19234 0.94961 0.92379 1.30140 0.91342 1.24720 0.98536 0.96074 1.01788 1.69659 1.36695 1.02311 1.49659 0.86204 0.83740 0.77786 0.78573 1.21807 1.21818 1.20845 1.21460 0.94152 0.96164 0.99930 0.90062 1.21857 0.99412 0.97949 1.00937 1.21733 0.97198 1.01390 0.80261 0.91109 0.91612 0.92687 0.89814 0.86681 0.72827 0.83316 0.92131 0.89705 0.91913 0.96640 0.96195 0.78272 0.93602 0.92689 0.91955 0.93410 0.91457 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.90 37.16 0.37 -0.75 16 2 C -0.04 -0.38 5.87 -27.88 -0.16 -0.54 16 3 C 0.04 0.45 6.69 -35.08 -0.23 0.21 16 4 O -0.20 -1.85 10.73 6.49 0.07 -1.78 16 5 C 0.18 1.48 13.19 51.96 0.69 2.16 16 6 N -0.46 -5.38 7.67 -11.48 -0.09 -5.47 16 7 C -0.07 -0.85 6.75 -83.02 -0.56 -1.41 16 8 C 0.60 8.63 7.68 -12.52 -0.10 8.53 16 9 O -0.54 -8.37 14.32 5.27 0.08 -8.30 16 10 N -0.58 -8.22 2.42 -174.30 -0.42 -8.64 16 11 C 0.06 0.85 6.30 -3.94 -0.02 0.83 16 12 C -0.12 -1.97 4.89 -26.83 -0.13 -2.10 16 13 C -0.09 -1.50 1.96 -90.58 -0.18 -1.68 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.16 3.25 5.19 -4.04 -0.02 3.23 16 16 N -0.73 -18.68 5.32 -59.90 -0.32 -19.00 16 17 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 21 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.10 -1.36 2.72 -90.50 -0.25 -1.60 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 C -0.14 -2.01 8.38 37.16 0.31 -1.70 16 28 C 0.12 1.54 5.82 -3.71 -0.02 1.52 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.12 1.13 6.62 -51.93 -0.34 0.79 16 34 H 0.26 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.15 2.11 3.62 -80.43 -0.29 1.81 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.57 7.15 -51.93 -0.37 1.20 16 38 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 41 H 0.38 10.21 6.84 -40.82 -0.28 9.93 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.05 0.82 5.97 -51.93 -0.31 0.51 16 44 H 0.06 0.90 6.59 -51.93 -0.34 0.56 16 45 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 1.19 7.03 -51.93 -0.37 0.82 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -33.31 367.72 -7.18 -40.49 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.18 Total: 7.85 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.56 Total: -0.69 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.10 Total: -60.75 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.15 Total: -10.08 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.31 -7.18 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184113283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.168 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds