Wall clock time and date at job start Tue Mar 31 2020 12:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47176 * 2 1 4 4 C 1.35320 * 126.66307 * 90.00165 * 3 2 1 5 5 C 1.42271 * 103.91994 * 179.97438 * 4 3 2 6 6 C 1.48330 * 126.93952 * 179.97438 * 5 4 3 7 7 O 1.21497 * 120.00031 * 353.64567 * 6 5 4 8 8 N 1.34775 * 120.00523 * 173.92730 * 6 5 4 9 9 C 1.46931 * 120.62456 * 3.94883 * 8 6 5 10 10 C 1.52761 * 109.00769 * 233.58551 * 9 8 6 11 11 C 1.53039 * 109.38426 * 305.59012 * 10 9 8 12 12 H 1.08998 * 109.46560 * 301.22087 * 11 10 9 13 13 C 1.53007 * 109.44706 * 181.25333 * 11 10 9 14 14 N 1.46494 * 109.46991 * 64.94305 * 13 11 10 15 15 C 1.36933 * 120.00252 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99738 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00430 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99767 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00020 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47005 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47059 * 119.99936 * 19 17 15 22 22 H 1.48502 * 109.46684 * 239.99783 * 19 17 15 23 23 C 1.53038 * 109.53510 * 61.24488 * 11 10 9 24 24 H 1.08994 * 109.50356 * 58.58300 * 23 11 10 25 25 C 1.53007 * 109.49853 * 178.68075 * 23 11 10 26 26 C 1.46919 * 120.63553 * 184.23757 * 8 6 5 27 27 N 1.30981 * 106.12268 * 0.22079 * 5 4 3 28 28 O 1.20906 * 111.44012 * 359.60711 * 27 5 4 29 29 H 1.09007 * 109.47088 * 299.99995 * 1 2 3 30 30 H 1.09001 * 109.47273 * 59.99593 * 1 2 3 31 31 H 1.09004 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47472 * 240.00238 * 2 1 3 33 33 H 1.08997 * 109.47544 * 119.99976 * 2 1 3 34 34 H 1.08002 * 128.03802 * 359.97438 * 4 3 2 35 35 H 1.08996 * 109.58953 * 353.42594 * 9 8 6 36 36 H 1.09005 * 109.58146 * 113.84780 * 9 8 6 37 37 H 1.09008 * 109.56051 * 185.55875 * 10 9 8 38 38 H 1.08996 * 109.38821 * 65.52039 * 10 9 8 39 39 H 1.08999 * 109.46642 * 184.94234 * 13 11 10 40 40 H 1.08999 * 109.46820 * 304.94171 * 13 11 10 41 41 H 0.97004 * 120.00387 * 359.97438 * 14 13 11 42 42 H 0.96999 * 119.99510 * 180.02562 * 18 17 15 43 43 H 1.08992 * 109.47204 * 179.83450 * 25 23 11 44 44 H 1.08993 * 109.46878 * 299.83911 * 25 23 11 45 45 H 1.09000 * 109.46985 * 59.83443 * 25 23 11 46 46 H 1.09000 * 109.58701 * 246.15430 * 26 8 6 47 47 H 1.09000 * 109.58796 * 6.57711 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3017 2.1826 1.0855 5 6 2.7396 3.4195 0.5355 6 6 3.1662 4.6268 1.2842 7 8 3.0545 4.6626 2.4935 8 7 3.6724 5.6862 0.6227 9 6 3.7282 5.6949 -0.8456 10 6 5.1591 5.9963 -1.2873 11 6 5.6297 7.2970 -0.6324 12 1 4.9624 8.1099 -0.9186 13 6 7.0516 7.6166 -1.0984 14 7 7.0444 7.8865 -2.5382 15 6 8.2119 8.1987 -3.1821 16 1 9.1379 8.2464 -2.6283 17 6 8.2053 8.4540 -4.5466 18 7 7.0767 8.3964 -5.2213 19 14 9.7981 8.8792 -5.4250 20 1 10.9170 8.8792 -4.4487 21 1 10.0639 7.8719 -6.4832 22 1 9.6794 10.2251 -6.0412 23 6 5.6157 7.1377 0.8896 24 1 6.2637 6.3090 1.1748 25 6 6.1175 8.4272 1.5427 26 6 4.1848 6.8517 1.3560 27 7 2.6849 3.2786 -0.7656 28 8 2.2996 2.1751 -1.0749 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 2.2063 1.9141 2.1272 35 1 3.4266 4.7200 -1.2285 36 1 3.0597 6.4643 -1.2320 37 1 5.1916 6.1026 -2.3717 38 1 5.8119 5.1784 -0.9822 39 1 7.4197 8.4937 -0.5661 40 1 7.7015 6.7665 -0.8912 41 1 6.2127 7.8441 -3.0356 42 1 7.0722 8.5744 -6.1748 43 1 6.1045 8.3144 2.6267 44 1 7.1355 8.6303 1.2106 45 1 5.4697 9.2556 1.2559 46 1 3.5543 7.7173 1.1528 47 1 4.1844 6.6398 2.4252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185516033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:32 Heat of formation + Delta-G solvation = 36.820531 kcal Electronic energy + Delta-G solvation = -27462.843509 eV Core-core repulsion = 23649.357147 eV Total energy + Delta-G solvation = -3813.486362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.32110 -40.28395 -38.06791 -35.36187 -35.04826 -34.27975 -33.30547 -31.96047 -30.53845 -30.30937 -27.23617 -26.89016 -24.86163 -24.31637 -23.55285 -22.73264 -22.13032 -21.22531 -19.92708 -19.10834 -18.02115 -17.61854 -17.14550 -16.86465 -16.07561 -15.28517 -15.02212 -14.83775 -14.80049 -14.42087 -14.00059 -13.90879 -13.76904 -13.53878 -13.29293 -13.10583 -12.99710 -12.66011 -12.57137 -12.19763 -11.96678 -11.85169 -11.74492 -11.54104 -11.23099 -10.98754 -10.84391 -10.82021 -10.67733 -10.41463 -10.36772 -10.16811 -10.01588 -9.81896 -9.72037 -9.62043 -8.84966 -8.66116 -6.88365 -5.75010 -3.02834 0.89213 1.41700 2.54933 2.78674 3.01031 3.44023 3.49729 3.51891 3.70426 4.08784 4.52610 4.59776 4.61443 4.69041 4.73872 4.88654 4.93666 4.99750 5.03966 5.18392 5.21604 5.34008 5.39426 5.48900 5.51557 5.57981 5.59704 5.65948 5.71418 5.74116 5.81395 5.89417 5.96521 6.05739 6.14794 6.23774 6.30676 6.38131 6.48049 6.51561 6.66728 6.85388 6.95569 7.21948 7.72249 7.74335 7.97702 8.44346 9.55425 10.14153 10.48771 11.48077 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.002913 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.814305 B = 9608.955454 C =11151.179203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.028 4.028 4 C -0.183 4.183 5 C -0.016 4.016 6 C 0.595 3.405 7 O -0.533 6.533 8 N -0.589 5.589 9 C 0.074 3.926 10 C -0.122 4.122 11 C -0.090 4.090 12 H 0.072 0.928 13 C 0.157 3.843 14 N -0.732 5.732 15 C -0.236 4.236 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.097 4.097 24 H 0.073 0.927 25 C -0.146 4.146 26 C 0.118 3.882 27 N -0.323 5.323 28 O 0.115 5.885 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.179 0.821 35 H 0.124 0.876 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.024 0.976 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.845 -15.192 13.892 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.206 4.206 5 C -0.175 4.175 6 C 0.381 3.619 7 O -0.409 6.409 8 N -0.321 5.321 9 C -0.048 4.048 10 C -0.160 4.160 11 C -0.109 4.109 12 H 0.091 0.909 13 C 0.030 3.970 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.117 4.117 24 H 0.091 0.909 25 C -0.204 4.204 26 C -0.004 4.004 27 N -0.027 5.027 28 O 0.044 5.956 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.197 0.803 35 H 0.141 0.859 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.437 -14.274 13.513 23.809 hybrid contribution 0.603 0.050 -0.136 0.620 sum -12.833 -14.224 13.377 23.365 Atomic orbital electron populations 1.21813 0.93301 1.02879 1.03019 1.20171 0.96762 0.86103 1.05096 1.24527 1.01908 0.97152 0.85489 1.22387 1.05098 0.91646 1.01450 1.23504 1.05979 0.97926 0.90090 1.16985 0.77947 0.80898 0.86064 1.90766 1.55901 1.81335 1.12906 1.48036 1.59099 1.16664 1.08288 1.22654 0.98803 1.05587 0.77749 1.21819 0.94256 0.97663 1.02264 1.21368 0.99091 0.97460 0.92991 0.90921 1.20748 0.92486 0.97143 0.86662 1.42387 1.08454 1.84200 1.02567 1.19271 0.87650 1.38768 0.91065 0.91252 1.24728 0.96923 1.02907 0.96552 1.69665 1.24516 1.56467 1.07613 0.86131 0.82894 0.77634 0.79641 1.20618 1.21902 1.21908 1.21468 0.95276 0.98917 0.96036 0.90890 1.21826 1.02358 0.96564 0.99640 1.21809 0.94555 0.86761 0.97273 1.73957 1.14509 0.98963 1.15275 1.84826 1.59663 1.17384 1.33740 0.91998 0.91883 0.91103 0.88954 0.88259 0.80324 0.85897 0.91115 0.89144 0.92072 0.95785 0.96632 0.78298 0.93613 0.92947 0.91209 0.92427 0.91031 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.89 37.15 0.37 -0.26 16 2 C -0.04 -0.20 6.50 -27.88 -0.18 -0.38 16 3 C -0.03 -0.23 6.73 -35.35 -0.24 -0.47 16 4 C -0.18 -1.87 10.93 -39.07 -0.43 -2.30 16 5 C -0.02 -0.22 6.95 -82.53 -0.57 -0.79 16 6 C 0.60 8.96 7.72 -12.11 -0.09 8.87 16 7 O -0.53 -8.98 16.39 5.37 0.09 -8.89 16 8 N -0.59 -8.47 2.98 -173.96 -0.52 -8.99 16 9 C 0.07 1.07 6.29 -3.93 -0.02 1.05 16 10 C -0.12 -1.98 5.23 -26.83 -0.14 -2.12 16 11 C -0.09 -1.48 1.74 -90.58 -0.16 -1.63 16 12 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 13 C 0.16 3.18 5.41 -4.04 -0.02 3.15 16 14 N -0.73 -18.54 5.32 -59.91 -0.32 -18.86 16 15 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 19 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 23 C -0.10 -1.34 2.41 -90.50 -0.22 -1.56 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 C -0.15 -1.82 8.82 37.16 0.33 -1.49 16 26 C 0.12 1.56 5.71 -3.71 -0.02 1.54 16 27 N -0.32 -4.22 8.51 33.29 0.28 -3.94 16 28 O 0.11 1.26 11.18 17.27 0.19 1.46 16 29 H 0.06 0.28 8.14 -51.92 -0.42 -0.15 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.12 1.78 3.77 -73.94 -0.28 1.50 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.66 7.15 -51.92 -0.37 1.29 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.49 6.14 -51.93 -0.32 0.17 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.13 6.84 -40.82 -0.28 9.85 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.93 6.30 -51.93 -0.33 0.61 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 1.22 7.03 -51.93 -0.37 0.86 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -32.95 375.38 -7.97 -40.91 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.41 Total: 6.40 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.65 Total: -3.76 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.17 Total: -59.38 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.28 Total: -7.43 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.95 -7.97 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185516033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.734 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds