Wall clock time and date at job start Tue Mar 31 2020 12:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47183 * 2 1 4 4 C 1.35309 * 126.66646 * 90.28801 * 3 2 1 5 5 C 1.42268 * 103.92185 * 180.15138 * 4 3 2 6 6 C 1.48331 * 126.93791 * 179.88808 * 5 4 3 7 7 O 1.21499 * 120.00067 * 6.24415 * 6 5 4 8 8 N 1.34783 * 120.00243 * 186.24399 * 6 5 4 9 9 C 1.47209 * 120.80992 * 355.32592 * 8 6 5 10 10 C 1.53184 * 108.85430 * 126.33536 * 9 8 6 11 11 C 1.53042 * 109.31587 * 54.64963 * 10 9 8 12 12 H 1.08998 * 109.46150 * 58.65083 * 11 10 9 13 13 C 1.53001 * 109.46223 * 178.61585 * 11 10 9 14 14 N 1.46503 * 109.46637 * 295.06585 * 13 11 10 15 15 C 1.36943 * 119.99827 * 180.02562 * 14 13 11 16 16 H 1.07996 * 119.99454 * 359.97438 * 15 14 13 17 17 C 1.38809 * 119.99793 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00293 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99588 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46947 * 90.00143 * 19 17 15 21 21 H 1.48497 * 109.47223 * 209.99717 * 19 17 15 22 22 H 1.48496 * 109.47360 * 330.00222 * 19 17 15 23 23 C 1.53041 * 109.53544 * 298.63366 * 11 10 9 24 24 H 1.08997 * 109.52540 * 181.33109 * 23 11 10 25 25 C 1.53002 * 109.49816 * 301.41458 * 23 11 10 26 26 C 1.46918 * 120.63205 * 175.17707 * 8 6 5 27 27 N 1.30980 * 106.12357 * 359.62847 * 5 4 3 28 28 O 1.20903 * 111.44219 * 0.23954 * 27 5 4 29 29 H 1.08998 * 109.47254 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47172 * 299.99734 * 1 2 3 31 31 H 1.08999 * 109.47671 * 59.99747 * 1 2 3 32 32 H 1.09005 * 109.46705 * 240.00098 * 2 1 3 33 33 H 1.08998 * 109.47150 * 120.00322 * 2 1 3 34 34 H 1.07999 * 128.03908 * 0.02562 * 4 3 2 35 35 H 1.08997 * 109.53545 * 6.52638 * 9 8 6 36 36 H 1.09000 * 109.55533 * 246.15251 * 9 8 6 37 37 H 1.09001 * 109.50146 * 294.69409 * 10 9 8 38 38 H 1.09002 * 109.52173 * 174.61867 * 10 9 8 39 39 H 1.08998 * 109.47181 * 55.06212 * 13 11 10 40 40 H 1.08994 * 109.47190 * 175.06697 * 13 11 10 41 41 H 0.96998 * 120.00492 * 0.02562 * 14 13 11 42 42 H 0.96996 * 119.99517 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47083 * 179.84018 * 25 23 11 44 44 H 1.09003 * 109.46592 * 299.83664 * 25 23 11 45 45 H 1.08994 * 109.47258 * 59.83708 * 25 23 11 46 46 H 1.09001 * 109.59094 * 113.82488 * 26 8 6 47 47 H 1.09001 * 109.58644 * 353.53730 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3068 2.1808 1.0853 5 6 2.7381 3.4199 0.5353 6 6 3.1649 4.6272 1.2841 7 8 3.2772 4.5840 2.4931 8 7 3.4281 5.7720 0.6233 9 6 3.3973 5.8177 -0.8477 10 6 2.4595 6.9460 -1.2884 11 6 2.8984 8.2556 -0.6293 12 1 3.9271 8.4779 -0.9128 13 6 1.9849 9.3915 -1.0942 14 7 2.1613 9.6020 -2.5333 15 6 1.4426 10.5743 -3.1762 16 1 0.7456 11.1857 -2.6224 17 6 1.6094 10.7734 -4.5398 18 7 2.4586 10.0279 -5.2147 19 14 0.6285 12.0993 -5.4169 20 1 1.3870 13.3758 -5.3897 21 1 0.3951 11.6922 -6.8257 22 1 -0.6763 12.2843 -4.7324 23 6 2.8073 8.1184 0.8922 24 1 3.0974 9.0588 1.3608 25 6 1.3707 7.7720 1.2886 26 6 3.7491 7.0033 1.3577 27 7 2.6877 3.2776 -0.7657 28 8 2.2985 2.1755 -1.0750 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.2171 1.9103 2.1271 35 1 3.0315 4.8665 -1.2344 36 1 4.4010 6.0074 -1.2280 37 1 1.4393 6.7103 -0.9855 38 1 2.5017 7.0522 -2.3724 39 1 0.9468 9.1296 -0.8899 40 1 2.2411 10.3059 -0.5592 41 1 2.7871 9.0526 -3.0307 42 1 2.5747 10.1669 -6.1676 43 1 1.3069 7.6716 2.3721 44 1 0.7010 8.5657 0.9572 45 1 1.0807 6.8322 0.8190 46 1 4.7816 7.2898 1.1573 47 1 3.6172 6.8362 2.4267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185516035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:36 Heat of formation + Delta-G solvation = 39.481776 kcal Electronic energy + Delta-G solvation = -27737.900361 eV Core-core repulsion = 23924.529398 eV Total energy + Delta-G solvation = -3813.370962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.31524 -40.37228 -38.11717 -35.34063 -34.99633 -34.26320 -33.14579 -31.72187 -30.49827 -30.30835 -27.23371 -26.99709 -24.84073 -24.37215 -23.54713 -22.95786 -22.48695 -21.22314 -19.84664 -18.35021 -18.03911 -17.58658 -17.25204 -16.82677 -15.94732 -15.44948 -15.06135 -14.92487 -14.71545 -14.29652 -14.00202 -13.89158 -13.76769 -13.67588 -13.52008 -13.06076 -12.89919 -12.74478 -12.46997 -12.23778 -12.17508 -11.72348 -11.58495 -11.44374 -11.16335 -10.97745 -10.91836 -10.75630 -10.67293 -10.40269 -10.32773 -10.17251 -10.00272 -9.80734 -9.71241 -9.62016 -8.84103 -8.64563 -6.88584 -5.74744 -3.02693 0.89947 1.42291 2.55760 2.79581 3.02621 3.44497 3.49650 3.51281 3.71179 4.09307 4.53159 4.60197 4.61752 4.70202 4.74594 4.89978 4.98164 5.00318 5.02377 5.19333 5.23454 5.34606 5.35257 5.50217 5.57026 5.58357 5.65030 5.69063 5.70678 5.73870 5.80319 5.87222 6.00026 6.09374 6.17532 6.21273 6.32635 6.38788 6.49008 6.51965 6.69071 6.84014 6.96643 7.23435 7.71879 7.75175 7.98921 8.44649 9.55638 10.14340 10.48976 11.48265 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.002988 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.631981 B = 9369.499594 C =10574.784803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.028 4.028 4 C -0.184 4.184 5 C -0.016 4.016 6 C 0.596 3.404 7 O -0.533 6.533 8 N -0.587 5.587 9 C 0.075 3.925 10 C -0.123 4.123 11 C -0.090 4.090 12 H 0.072 0.928 13 C 0.159 3.841 14 N -0.732 5.732 15 C -0.237 4.237 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.098 4.098 24 H 0.084 0.916 25 C -0.146 4.146 26 C 0.117 3.883 27 N -0.323 5.323 28 O 0.115 5.885 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.179 0.821 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.021 0.979 40 H 0.017 0.983 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.048 0.952 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -20.755 13.749 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.206 4.206 5 C -0.175 4.175 6 C 0.382 3.618 7 O -0.409 6.409 8 N -0.319 5.319 9 C -0.047 4.047 10 C -0.161 4.161 11 C -0.109 4.109 12 H 0.090 0.910 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.118 4.118 24 H 0.103 0.897 25 C -0.203 4.203 26 C -0.005 4.005 27 N -0.027 5.027 28 O 0.044 5.956 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.197 0.803 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.200 -19.787 13.361 23.876 hybrid contribution -0.369 0.453 -0.112 0.595 sum -0.169 -19.334 13.249 23.438 Atomic orbital electron populations 1.21818 0.93254 1.02892 1.03131 1.20169 0.96827 0.86083 1.05000 1.24527 1.01944 0.97128 0.85499 1.22383 1.05249 0.91540 1.01436 1.23520 1.06096 0.97799 0.90085 1.16958 0.77612 0.81233 0.86044 1.90766 1.53548 1.83672 1.12918 1.48051 1.66841 1.08749 1.08224 1.22769 1.01107 1.03155 0.77683 1.21922 0.98809 0.93291 1.02070 1.21335 1.00741 0.95764 0.93057 0.90993 1.20704 0.95800 0.93732 0.86617 1.42387 1.50453 1.42120 1.02665 1.19226 1.16746 1.09748 0.91133 0.91313 1.24724 0.99956 0.99826 0.96546 1.69655 1.38993 1.41907 1.07724 0.86202 0.79530 0.81487 0.79055 1.21774 1.21792 1.20824 1.21481 0.95789 0.97834 0.96657 0.89747 1.21870 0.96119 1.01990 1.00296 1.21778 0.98575 0.82826 0.97329 1.73960 1.14763 0.98707 1.15291 1.84828 1.59689 1.17391 1.33730 0.91107 0.91965 0.91809 0.89013 0.88287 0.80349 0.85982 0.91112 0.91621 0.89327 0.96137 0.96492 0.78285 0.93560 0.93274 0.91781 0.92787 0.91092 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 37.16 0.37 -0.32 16 2 C -0.04 -0.19 6.50 -27.89 -0.18 -0.38 16 3 C -0.03 -0.24 6.73 -35.35 -0.24 -0.47 16 4 C -0.18 -1.87 10.93 -39.08 -0.43 -2.29 16 5 C -0.02 -0.22 6.95 -82.53 -0.57 -0.79 16 6 C 0.60 8.84 7.72 -12.10 -0.09 8.74 16 7 O -0.53 -8.88 16.39 5.37 0.09 -8.79 16 8 N -0.59 -8.25 2.43 -173.48 -0.42 -8.68 16 9 C 0.07 1.07 6.34 -3.56 -0.02 1.04 16 10 C -0.12 -1.97 4.91 -26.61 -0.13 -2.10 16 11 C -0.09 -1.46 1.96 -90.58 -0.18 -1.64 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 13 C 0.16 3.21 5.19 -4.04 -0.02 3.19 16 14 N -0.73 -18.54 5.32 -59.91 -0.32 -18.86 16 15 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 19 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.10 -1.33 2.72 -90.50 -0.25 -1.58 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 C -0.15 -2.00 8.38 37.16 0.31 -1.69 16 26 C 0.12 1.52 5.80 -3.71 -0.02 1.50 16 27 N -0.32 -4.19 8.52 33.29 0.28 -3.91 16 28 O 0.11 1.26 11.18 17.23 0.19 1.45 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.12 1.75 3.79 -72.45 -0.27 1.48 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.09 6.33 -51.93 -0.33 0.76 16 38 H 0.09 1.62 7.15 -51.93 -0.37 1.25 16 39 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.38 10.13 6.84 -40.82 -0.28 9.85 16 42 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.91 6.59 -51.93 -0.34 0.57 16 45 H 0.05 0.79 5.97 -51.93 -0.31 0.48 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 1.21 7.03 -51.93 -0.37 0.84 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -32.86 371.47 -7.82 -40.68 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.24 Total: 6.67 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -1.70 Total: -4.16 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.27 Total: -59.05 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.28 Total: -7.34 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.86 -7.82 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185516035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.158 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds