Wall clock time and date at job start Tue Mar 31 2020 12:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47079 * 2 1 4 4 O 1.33493 * 126.83159 * 270.13700 * 3 2 1 5 5 N 1.20653 * 113.15880 * 180.33402 * 4 3 2 6 6 C 1.30015 * 112.30310 * 359.71937 * 5 4 3 7 7 C 1.50700 * 127.33574 * 179.97438 * 6 5 4 8 8 C 1.37359 * 126.82879 * 90.00037 * 3 2 1 9 9 C 1.47396 * 128.56744 * 359.96973 * 8 3 2 10 10 O 1.21613 * 120.00072 * 269.70547 * 9 8 3 11 11 N 1.34773 * 119.99991 * 89.97744 * 9 8 3 12 12 C 1.46931 * 120.63014 * 359.45025 * 11 9 8 13 13 C 1.53622 * 108.54363 * 126.36772 * 12 11 9 14 14 C 1.53040 * 109.24533 * 54.85657 * 13 12 11 15 15 C 1.52998 * 109.45971 * 178.49152 * 14 13 12 16 16 N 1.46498 * 109.47274 * 295.06628 * 15 14 13 17 17 C 1.36935 * 120.00020 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00096 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99844 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99900 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99822 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46792 * 60.00500 * 21 19 17 23 23 H 1.48499 * 109.46808 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47082 * 299.99938 * 21 19 17 25 25 C 1.53047 * 109.53683 * 298.51119 * 14 13 12 26 26 C 1.46933 * 120.63376 * 179.72574 * 11 9 8 27 27 H 1.08999 * 109.46797 * 60.00393 * 1 2 3 28 28 H 1.09006 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47661 * 299.99962 * 1 2 3 30 30 H 1.08996 * 109.47051 * 239.99606 * 2 1 3 31 31 H 1.08999 * 109.46797 * 119.99606 * 2 1 3 32 32 H 1.08997 * 109.46477 * 270.03625 * 7 6 5 33 33 H 1.08997 * 109.47522 * 30.03778 * 7 6 5 34 34 H 1.08994 * 109.46883 * 150.04281 * 7 6 5 35 35 H 1.09000 * 109.58712 * 246.19984 * 12 11 9 36 36 H 1.09000 * 109.58632 * 6.62336 * 12 11 9 37 37 H 1.09006 * 109.63080 * 294.86331 * 13 12 11 38 38 H 1.08996 * 109.43231 * 174.73094 * 13 12 11 39 39 H 1.08996 * 109.44974 * 58.52469 * 14 13 12 40 40 H 1.09005 * 109.47487 * 55.06914 * 15 14 13 41 41 H 1.08998 * 109.46837 * 175.06690 * 15 14 13 42 42 H 0.96998 * 119.99640 * 0.02562 * 16 15 14 43 43 H 0.96998 * 119.99666 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.49603 * 301.41658 * 25 14 13 45 45 H 1.08995 * 109.52428 * 181.33604 * 25 14 13 46 46 H 1.08998 * 109.58172 * 353.37211 * 26 11 9 47 47 H 1.08995 * 109.58466 * 113.65834 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2966 2.1761 -1.0685 5 7 2.6942 3.2790 -0.7833 6 6 2.7616 3.4621 0.5021 7 6 3.2107 4.7053 1.2259 8 6 2.3068 2.1971 1.0995 9 6 2.1823 1.8469 2.5258 10 8 1.1399 2.0588 3.1153 11 7 3.2255 1.2968 3.1781 12 6 4.4893 1.0292 2.4781 13 6 5.6318 1.6938 3.2610 14 6 5.6011 1.2047 4.7108 15 6 6.7600 1.8348 5.4859 16 7 8.0315 1.3538 4.9399 17 6 9.2145 1.7843 5.4786 18 1 9.2102 2.4781 6.3063 19 6 10.4193 1.3281 4.9616 20 7 10.4245 0.4822 3.9533 21 14 12.0332 1.9148 5.6970 22 1 12.0911 1.5339 7.1311 23 1 13.1656 1.2856 4.9710 24 1 12.1258 3.3917 5.5728 25 6 4.2748 1.6084 5.3591 26 6 3.1188 0.9479 4.6014 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.2858 4.6566 1.3987 33 1 2.9793 5.5817 0.6207 34 1 2.6920 4.7765 2.1818 35 1 4.6567 -0.0465 2.4246 36 1 4.4444 1.4445 1.4713 37 1 5.5089 2.7767 3.2396 38 1 6.5860 1.4266 2.8070 39 1 5.6991 0.1193 4.7298 40 1 6.7119 2.9198 5.3931 41 1 6.6876 1.5566 6.5373 42 1 8.0353 0.7304 4.1968 43 1 11.2663 0.1637 3.5917 44 1 4.1647 2.6920 5.3180 45 1 4.2629 1.2807 6.3986 46 1 2.1693 1.3096 4.9960 47 1 3.1742 -0.1345 4.7174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206922014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:30 Heat of formation + Delta-G solvation = 20.316449 kcal Electronic energy + Delta-G solvation = -27915.853659 eV Core-core repulsion = 24101.651626 eV Total energy + Delta-G solvation = -3814.202033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.07067 -40.21914 -37.76935 -35.17042 -34.96872 -34.72408 -32.88489 -31.33792 -30.47802 -30.28112 -28.97862 -26.96427 -25.13880 -24.07741 -23.41876 -23.25072 -21.76898 -20.63297 -20.02538 -19.24428 -18.10361 -17.60243 -17.11905 -16.64301 -16.07616 -15.54051 -14.86222 -14.73464 -14.53102 -14.28266 -14.01047 -13.78633 -13.63872 -13.54942 -13.45904 -13.25075 -13.08674 -12.85852 -12.77601 -12.45802 -12.30302 -11.96180 -11.87793 -11.78144 -11.23896 -11.16932 -11.02945 -10.84789 -10.48024 -10.42789 -10.37216 -10.27840 -10.05387 -9.97871 -9.67808 -9.54735 -8.89358 -8.75479 -6.94442 -5.79420 -3.07613 1.09328 1.73000 2.21675 2.57802 2.96900 3.42233 3.46819 3.47607 3.86873 3.98971 4.36774 4.56125 4.57721 4.75232 4.77299 4.81887 4.91797 4.97071 5.05204 5.11483 5.21500 5.28475 5.30784 5.38512 5.42348 5.44934 5.48313 5.51367 5.58677 5.58914 5.72414 5.82068 5.82990 5.88920 5.91088 6.04260 6.13358 6.22464 6.35502 6.41080 6.57377 6.76123 6.87342 7.19369 7.67399 7.92201 8.03654 8.39968 9.51114 10.08856 10.43465 11.43469 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.002956 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.733856 B = 9470.631927 C = 9942.569707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.046 4.046 3 C 0.016 3.984 4 O 0.098 5.902 5 N -0.355 5.355 6 C 0.057 3.943 7 C -0.080 4.080 8 C -0.241 4.241 9 C 0.601 3.399 10 O -0.533 6.533 11 N -0.595 5.595 12 C 0.107 3.893 13 C -0.123 4.123 14 C -0.094 4.094 15 C 0.158 3.842 16 N -0.732 5.732 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.126 4.126 26 C 0.113 3.887 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.161 -0.419 -7.140 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 C -0.047 4.047 4 O 0.036 5.964 5 N -0.061 5.061 6 C -0.106 4.106 7 C -0.137 4.137 8 C -0.249 4.249 9 C 0.387 3.613 10 O -0.410 6.410 11 N -0.328 5.328 12 C -0.016 4.016 13 C -0.161 4.161 14 C -0.113 4.113 15 C 0.031 3.969 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.164 4.164 26 C -0.009 4.009 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.110 0.890 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.311 0.523 -7.779 21.756 hybrid contribution 1.068 -0.131 0.821 1.353 sum -19.244 0.392 -6.958 20.467 Atomic orbital electron populations 1.21793 0.92843 1.03031 1.03215 1.20237 0.97235 0.85804 1.05125 1.24637 0.98805 0.96140 0.85162 1.84529 1.61380 1.17611 1.32887 1.73624 1.17241 0.98678 1.16565 1.24751 1.00142 0.96722 0.88946 1.20252 1.02572 0.91276 0.99598 1.21841 1.12404 0.95509 0.95107 1.16915 0.83329 0.77045 0.84038 1.90798 1.28420 1.54059 1.67742 1.48111 1.12949 1.60558 1.11152 1.21968 0.82794 1.00874 0.95932 1.21991 0.98074 1.00389 0.95677 1.21316 0.94450 1.00843 0.94677 1.20661 0.85340 0.95910 0.95005 1.42361 0.99969 1.54876 1.40416 1.19184 0.84268 1.21362 1.12273 0.91321 1.24724 0.97646 0.99913 0.98657 1.69637 1.25648 1.35865 1.27161 0.86275 0.83535 0.78090 0.78335 1.21283 1.21681 1.21298 1.21916 0.93948 1.01130 0.99439 1.21703 1.00315 0.99787 0.79081 0.91899 0.90941 0.91624 0.88567 0.88503 0.89244 0.89903 0.89818 0.90815 0.90424 0.91733 0.89276 0.90885 0.96443 0.96330 0.78291 0.93476 0.91488 0.90401 0.89038 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.05 -0.34 6.38 -27.88 -0.18 -0.52 16 3 C 0.02 0.17 6.80 -34.63 -0.24 -0.06 16 4 O 0.10 1.15 11.06 18.65 0.21 1.36 16 5 N -0.35 -4.64 12.01 34.78 0.42 -4.22 16 6 C 0.06 0.71 7.55 -79.76 -0.60 0.10 16 7 C -0.08 -0.82 10.49 36.01 0.38 -0.44 16 8 C -0.24 -2.97 4.19 -102.89 -0.43 -3.40 16 9 C 0.60 7.97 7.49 -12.53 -0.09 7.87 16 10 O -0.53 -8.53 16.52 5.27 0.09 -8.45 16 11 N -0.60 -7.11 2.97 -173.78 -0.52 -7.63 16 12 C 0.11 1.25 6.37 -3.48 -0.02 1.22 16 13 C -0.12 -1.73 5.26 -26.39 -0.14 -1.87 16 14 C -0.09 -1.38 2.19 -90.58 -0.20 -1.57 16 15 C 0.16 3.03 5.65 -4.04 -0.02 3.01 16 16 N -0.73 -17.82 5.32 -59.91 -0.32 -18.14 16 17 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 21 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.13 -1.51 5.36 -26.61 -0.14 -1.65 16 26 C 0.11 1.27 6.43 -3.71 -0.02 1.25 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.69 8.11 -51.93 -0.42 0.27 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.90 6.30 -51.93 -0.33 0.57 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.38 9.69 6.84 -40.82 -0.28 9.41 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 1.07 7.00 -51.93 -0.36 0.71 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -32.49 385.02 -7.86 -40.35 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.65 Total: 4.69 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.59 Total: -3.97 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.31 Total: -56.93 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.29 Total: -7.09 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.49 -7.86 -40.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206922014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.669 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds