Wall clock time and date at job start Tue Mar 31 2020 12:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47079 * 2 1 4 4 O 1.33493 * 126.83159 * 270.13700 * 3 2 1 5 5 N 1.20653 * 113.15880 * 180.33402 * 4 3 2 6 6 C 1.30015 * 112.30310 * 359.71937 * 5 4 3 7 7 C 1.50700 * 127.33574 * 179.97438 * 6 5 4 8 8 C 1.37359 * 126.82879 * 90.00037 * 3 2 1 9 9 C 1.47396 * 128.56744 * 359.96973 * 8 3 2 10 10 O 1.21613 * 120.00072 * 269.70547 * 9 8 3 11 11 N 1.34773 * 119.99991 * 89.97744 * 9 8 3 12 12 C 1.46931 * 120.63014 * 359.45025 * 11 9 8 13 13 C 1.53622 * 108.54363 * 126.36772 * 12 11 9 14 14 C 1.53040 * 109.24533 * 54.85657 * 13 12 11 15 15 C 1.52998 * 109.45971 * 178.49152 * 14 13 12 16 16 N 1.46498 * 109.47274 * 295.06628 * 15 14 13 17 17 C 1.36935 * 120.00020 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00096 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99844 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99900 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99822 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46792 * 60.00500 * 21 19 17 23 23 H 1.48499 * 109.46808 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47082 * 299.99938 * 21 19 17 25 25 C 1.53047 * 109.53683 * 298.51119 * 14 13 12 26 26 C 1.46933 * 120.63376 * 179.72574 * 11 9 8 27 27 H 1.08999 * 109.46797 * 60.00393 * 1 2 3 28 28 H 1.09006 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47661 * 299.99962 * 1 2 3 30 30 H 1.08996 * 109.47051 * 239.99606 * 2 1 3 31 31 H 1.08999 * 109.46797 * 119.99606 * 2 1 3 32 32 H 1.08997 * 109.46477 * 270.03625 * 7 6 5 33 33 H 1.08997 * 109.47522 * 30.03778 * 7 6 5 34 34 H 1.08994 * 109.46883 * 150.04281 * 7 6 5 35 35 H 1.09000 * 109.58712 * 246.19984 * 12 11 9 36 36 H 1.09000 * 109.58632 * 6.62336 * 12 11 9 37 37 H 1.09006 * 109.63080 * 294.86331 * 13 12 11 38 38 H 1.08996 * 109.43231 * 174.73094 * 13 12 11 39 39 H 1.08996 * 109.44974 * 58.52469 * 14 13 12 40 40 H 1.09005 * 109.47487 * 55.06914 * 15 14 13 41 41 H 1.08998 * 109.46837 * 175.06690 * 15 14 13 42 42 H 0.96998 * 119.99640 * 0.02562 * 16 15 14 43 43 H 0.96998 * 119.99666 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.49603 * 301.41658 * 25 14 13 45 45 H 1.08995 * 109.52428 * 181.33604 * 25 14 13 46 46 H 1.08998 * 109.58172 * 353.37211 * 26 11 9 47 47 H 1.08995 * 109.58466 * 113.65834 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2966 2.1761 -1.0685 5 7 2.6942 3.2790 -0.7833 6 6 2.7616 3.4621 0.5021 7 6 3.2107 4.7053 1.2259 8 6 2.3068 2.1971 1.0995 9 6 2.1823 1.8469 2.5258 10 8 1.1399 2.0588 3.1153 11 7 3.2255 1.2968 3.1781 12 6 4.4893 1.0292 2.4781 13 6 5.6318 1.6938 3.2610 14 6 5.6011 1.2047 4.7108 15 6 6.7600 1.8348 5.4859 16 7 8.0315 1.3538 4.9399 17 6 9.2145 1.7843 5.4786 18 1 9.2102 2.4781 6.3063 19 6 10.4193 1.3281 4.9616 20 7 10.4245 0.4822 3.9533 21 14 12.0332 1.9148 5.6970 22 1 12.0911 1.5339 7.1311 23 1 13.1656 1.2856 4.9710 24 1 12.1258 3.3917 5.5728 25 6 4.2748 1.6084 5.3591 26 6 3.1188 0.9479 4.6014 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.2858 4.6566 1.3987 33 1 2.9793 5.5817 0.6207 34 1 2.6920 4.7765 2.1818 35 1 4.6567 -0.0465 2.4246 36 1 4.4444 1.4445 1.4713 37 1 5.5089 2.7767 3.2396 38 1 6.5860 1.4266 2.8070 39 1 5.6991 0.1193 4.7298 40 1 6.7119 2.9198 5.3931 41 1 6.6876 1.5566 6.5373 42 1 8.0353 0.7304 4.1968 43 1 11.2663 0.1637 3.5917 44 1 4.1647 2.6920 5.3180 45 1 4.2629 1.2807 6.3986 46 1 2.1693 1.3096 4.9960 47 1 3.1742 -0.1345 4.7174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206922014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:29 Heat of formation + Delta-G solvation = 1.323571 kcal Electronic energy + Delta-G solvation = -27916.677252 eV Core-core repulsion = 24101.651626 eV Total energy + Delta-G solvation = -3815.025626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.98903 -41.26420 -38.95735 -36.56865 -35.89963 -35.61858 -34.45004 -32.53853 -31.93578 -31.25163 -29.85244 -28.36448 -26.33990 -25.15181 -24.60179 -24.35978 -23.10803 -21.75120 -20.99664 -20.25873 -19.24932 -18.93248 -18.51196 -17.66539 -17.03297 -16.70563 -16.41032 -15.67646 -15.61576 -15.45287 -15.31670 -15.24642 -14.78308 -14.49316 -14.39071 -14.21355 -14.09513 -13.95521 -13.86101 -13.56901 -13.49760 -13.12718 -12.93144 -12.72395 -12.58571 -12.51156 -12.25977 -12.20372 -11.95235 -11.88245 -11.68749 -11.58568 -11.36072 -11.28475 -10.95235 -10.89056 -10.44174 -9.78677 -8.96735 -7.94072 -5.21561 0.23609 0.79390 1.20073 1.47965 1.50039 1.56193 1.69382 2.06301 2.56892 2.97899 3.16778 3.39478 3.46004 3.74183 3.76441 3.79651 3.91065 4.05233 4.10974 4.20792 4.24658 4.29280 4.33220 4.38488 4.44921 4.50381 4.57438 4.62426 4.70585 4.76936 4.78762 4.85736 4.93506 4.94848 4.97960 5.01719 5.04444 5.09735 5.16510 5.25748 5.28124 5.47250 5.52151 5.54692 6.18471 6.28909 6.90888 7.14444 7.35818 8.12571 8.36248 9.29000 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.002956 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.733856 B = 9470.631927 C = 9942.569707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.032 3.968 4 O 0.095 5.905 5 N -0.375 5.375 6 C 0.048 3.952 7 C -0.079 4.079 8 C -0.266 4.266 9 C 0.607 3.393 10 O -0.564 6.564 11 N -0.590 5.590 12 C 0.117 3.883 13 C -0.117 4.117 14 C -0.083 4.083 15 C 0.157 3.843 16 N -0.742 5.742 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.072 4.072 20 N -0.966 5.966 21 Si 0.969 3.031 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.280 1.280 25 C -0.116 4.116 26 C 0.115 3.885 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.013 0.987 41 H 0.020 0.980 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.894 -1.052 -6.950 22.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.032 4.032 4 O 0.035 5.965 5 N -0.083 5.083 6 C -0.114 4.114 7 C -0.136 4.136 8 C -0.273 4.273 9 C 0.394 3.606 10 O -0.443 6.443 11 N -0.321 5.321 12 C -0.005 4.005 13 C -0.155 4.155 14 C -0.102 4.102 15 C 0.030 3.970 16 N -0.385 5.385 17 C -0.378 4.378 18 H 0.089 0.911 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.798 3.202 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.206 1.206 25 C -0.154 4.154 26 C -0.007 4.007 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.061 0.939 30 H 0.140 0.860 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.031 0.969 41 H 0.038 0.962 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.064 -0.099 -7.567 22.382 hybrid contribution 1.246 0.078 0.781 1.473 sum -19.818 -0.022 -6.786 20.947 Atomic orbital electron populations 1.21772 0.92373 1.04187 1.02156 1.20484 0.97459 0.83875 1.06695 1.25232 0.96773 0.96956 0.84265 1.84503 1.61314 1.17469 1.33249 1.73611 1.18311 0.99429 1.16922 1.25100 0.99890 0.97409 0.89003 1.20309 1.02684 0.91067 0.99560 1.21844 1.14285 0.96101 0.95091 1.16951 0.82981 0.76441 0.84243 1.90781 1.29611 1.55408 1.68505 1.48126 1.12605 1.59936 1.11479 1.21871 0.81580 1.01548 0.95485 1.21864 0.97880 1.00217 0.95573 1.21193 0.94026 1.00426 0.94518 1.20819 0.84910 0.95765 0.95464 1.42545 1.01005 1.54723 1.40255 1.19570 0.85603 1.20706 1.11940 0.91055 1.25492 1.00813 1.00678 0.99489 1.69782 1.25955 1.37351 1.28616 0.85278 0.79496 0.77693 0.77699 1.20484 1.22109 1.20641 1.21832 0.92493 1.00944 1.00173 1.21765 0.99672 1.00865 0.78365 0.91731 0.88690 0.93879 0.85969 0.87895 0.88895 0.88798 0.89882 0.89142 0.90148 0.92342 0.91799 0.90803 0.96869 0.96196 0.79132 0.94006 0.91974 0.88907 0.89121 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.89 71.98 0.71 -1.05 16 2 C -0.05 -0.59 6.38 29.85 0.19 -0.40 16 3 C 0.03 0.63 6.80 25.48 0.17 0.80 16 4 O 0.09 2.16 11.06 76.99 0.85 3.01 16 5 N -0.37 -9.65 12.01 -44.78 -0.54 -10.18 16 6 C 0.05 1.18 7.55 45.16 0.34 1.52 16 7 C -0.08 -1.60 10.49 71.24 0.75 -0.85 16 8 C -0.27 -6.33 4.19 -18.74 -0.08 -6.41 16 9 C 0.61 15.48 7.49 86.66 0.65 16.13 16 10 O -0.56 -17.67 16.52 -4.07 -0.07 -17.74 16 11 N -0.59 -13.14 2.97 -821.96 -2.44 -15.58 16 12 C 0.12 2.57 6.37 86.51 0.55 3.12 16 13 C -0.12 -3.23 5.26 30.82 0.16 -3.06 16 14 C -0.08 -2.33 2.19 -10.77 -0.02 -2.35 16 15 C 0.16 5.91 5.65 86.38 0.49 6.40 16 16 N -0.74 -36.25 5.32 -343.45 -1.83 -38.07 16 17 C -0.25 -13.53 9.99 84.04 0.84 -12.69 16 18 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 19 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 20 N -0.97 -57.74 13.06 21.65 0.28 -57.45 16 21 Si 0.97 45.53 29.55 68.60 2.03 47.55 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 C -0.12 -2.57 5.36 30.67 0.16 -2.40 16 26 C 0.11 2.33 6.43 86.36 0.56 2.88 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.20 8.11 -2.39 -0.02 1.18 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.76 6.30 -2.39 -0.02 1.75 16 37 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.06 2.11 7.15 -2.39 -0.02 2.10 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.38 19.24 6.84 -92.71 -0.63 18.61 16 43 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.09 1.94 7.00 -2.39 -0.02 1.93 16 47 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -69.53 385.02 4.56 -64.97 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.33 Total: 25.49 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 5.94 Total: -1.98 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -4.52 Total: -121.29 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.78 Total: -14.73 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -69.53 4.56 -64.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206922014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.291 kcal (2) G-P(sol) polarization free energy of solvation -69.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds