Wall clock time and date at job start Tue Mar 31 2020 13:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 C 1.50705 * 109.47411 * 120.00040 * 2 1 3 5 5 N 1.34628 * 125.89359 * 300.02916 * 4 2 1 6 6 H 0.97003 * 124.80598 * 0.02562 * 5 4 2 7 7 C 1.36430 * 110.38096 * 179.97438 * 5 4 2 8 8 C 1.50687 * 125.45609 * 180.02562 * 7 5 4 9 9 N 1.46900 * 109.47413 * 84.99907 * 8 7 5 10 10 C 1.46891 * 111.00063 * 294.30236 * 9 8 7 11 11 C 1.53241 * 109.34506 * 172.74232 * 10 9 8 12 12 N 1.47086 * 108.51746 * 53.82890 * 11 10 9 13 13 C 1.36930 * 120.88004 * 128.79775 * 12 11 10 14 14 H 1.08000 * 119.99969 * 206.98607 * 13 12 11 15 15 C 1.38806 * 120.00274 * 26.99300 * 13 12 11 16 16 N 1.31621 * 120.00036 * 17.14468 * 15 13 12 17 17 Si 1.86802 * 120.00018 * 197.14997 * 15 13 12 18 18 H 1.48503 * 109.47261 * 94.12408 * 17 15 13 19 19 H 1.48501 * 109.47184 * 214.11860 * 17 15 13 20 20 H 1.48499 * 109.47320 * 334.11887 * 17 15 13 21 21 C 1.47083 * 118.23664 * 308.81567 * 12 11 10 22 22 C 1.46900 * 111.00191 * 169.99681 * 9 8 7 23 23 C 1.34433 * 109.08319 * 359.97438 * 7 5 4 24 24 C 1.37837 * 125.89737 * 119.71999 * 4 2 1 25 25 C 1.47110 * 127.02688 * 359.97438 * 24 4 2 26 26 O 1.21554 * 119.99550 * 0.02562 * 25 24 4 27 27 O 1.34784 * 120.00325 * 180.02562 * 25 24 4 28 28 H 1.08999 * 109.47558 * 299.99902 * 1 2 3 29 29 H 1.08999 * 109.46921 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47330 * 60.00574 * 1 2 3 31 31 H 1.08999 * 109.47558 * 240.00098 * 2 1 3 32 32 H 1.09003 * 109.46992 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47459 * 300.00153 * 3 2 1 34 34 H 1.09000 * 109.47076 * 60.00169 * 3 2 1 35 35 H 1.08999 * 109.47062 * 204.99928 * 8 7 5 36 36 H 1.09007 * 109.47661 * 324.99645 * 8 7 5 37 37 H 1.08997 * 109.49491 * 292.70316 * 10 9 8 38 38 H 1.09001 * 109.49619 * 52.77906 * 10 9 8 39 39 H 1.09003 * 109.62592 * 294.12315 * 11 10 9 40 40 H 1.08992 * 109.79383 * 173.63175 * 11 10 9 41 41 H 0.97001 * 119.99812 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.62977 * 291.47588 * 21 12 11 43 43 H 1.08998 * 109.78814 * 170.99112 * 21 12 11 44 44 H 1.08998 * 109.49568 * 307.21195 * 22 9 8 45 45 H 1.08994 * 109.49157 * 67.26882 * 22 9 8 46 46 H 1.08000 * 126.81293 * 180.02562 * 23 7 5 47 47 H 0.96701 * 116.99609 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7809 -0.3558 2.5046 6 1 1.2418 0.4052 2.7714 7 6 2.3909 -1.2189 3.3673 8 6 2.3328 -1.1388 4.8709 9 7 1.1181 -1.8113 5.3506 10 6 -0.0878 -1.0984 4.9087 11 6 -1.3270 -1.9237 5.2713 12 7 -1.2786 -2.2323 6.7086 13 6 -2.3520 -1.9755 7.5191 14 1 -2.2005 -1.7830 8.5709 15 6 -3.6347 -1.9626 6.9889 16 7 -3.8681 -2.5150 5.8172 17 14 -5.0297 -1.1611 7.9381 18 1 -5.1916 0.2446 7.4875 19 1 -6.2894 -1.9080 7.6916 20 1 -4.7174 -1.1829 9.3897 21 6 -0.0465 -2.8237 7.2522 22 6 1.1422 -1.9629 6.8116 23 6 3.0510 -2.1530 2.6610 24 6 2.8237 -1.8389 1.2457 25 6 3.3365 -2.5770 0.0811 26 8 3.0685 -2.2005 -1.0432 27 8 4.1035 -3.6707 0.2606 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.2101 -1.6273 5.2949 36 1 2.3149 -0.0933 5.1787 37 1 -0.1390 -0.1287 5.4038 38 1 -0.0500 -0.9542 3.8289 39 1 -1.3302 -2.8506 4.6977 40 1 -2.2285 -1.3528 5.0496 41 1 -4.7644 -2.5057 5.4465 42 1 0.0733 -3.8371 6.8690 43 1 -0.0978 -2.8476 8.3407 44 1 2.0721 -2.4458 7.1119 45 1 1.0744 -0.9812 7.2802 46 1 3.6307 -2.9739 3.0566 47 1 4.4167 -4.1226 -0.5349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591912147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:53 Heat of formation + Delta-G solvation = -25.997574 kcal Electronic energy + Delta-G solvation = -27917.575931 eV Core-core repulsion = 24101.365571 eV Total energy + Delta-G solvation = -3816.210360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.55291 -39.58073 -38.05252 -36.07864 -35.34297 -34.33856 -31.59419 -31.21471 -29.99033 -29.54247 -27.33831 -26.79742 -24.57843 -24.36833 -22.68952 -22.46184 -20.97208 -20.44655 -19.65369 -19.12328 -17.92952 -16.87003 -16.61605 -15.70706 -15.61471 -15.27143 -14.89407 -14.65871 -14.48461 -14.36141 -14.08131 -13.66155 -13.51014 -13.35773 -13.17055 -12.96993 -12.85144 -12.77376 -12.36433 -12.19614 -11.73334 -11.52204 -11.47735 -11.34664 -11.31865 -11.15843 -10.99524 -10.79821 -10.52409 -10.37182 -10.25805 -10.11184 -9.80834 -9.70230 -8.87860 -8.54761 -8.15421 -7.87194 -6.70242 -5.81496 -3.23253 1.47195 2.34934 2.89952 3.32312 3.34367 3.41757 3.43340 3.46099 4.40685 4.45480 4.49232 4.72139 4.80626 4.96352 5.13863 5.28222 5.34826 5.37042 5.41197 5.41857 5.45181 5.59302 5.60990 5.67112 5.78537 5.82314 5.86632 5.88741 5.99666 6.05969 6.09771 6.10774 6.22835 6.29332 6.46668 6.60148 6.62583 6.75236 6.90139 6.97995 7.17748 7.33987 7.50087 7.58772 7.64309 7.77494 8.06540 8.39790 9.17584 9.80933 10.39703 11.27280 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.003282 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.890009 B = 8530.028338 C = 9295.240679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C -0.145 4.145 4 C 0.134 3.866 5 N -0.535 5.535 6 H 0.416 0.584 7 C 0.029 3.971 8 C 0.119 3.881 9 N -0.527 5.527 10 C 0.034 3.966 11 C 0.180 3.820 12 N -0.595 5.595 13 C -0.254 4.254 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.902 5.902 17 Si 0.902 3.098 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.148 3.852 22 C 0.045 3.955 23 C -0.123 4.123 24 C -0.235 4.235 25 C 0.562 3.438 26 O -0.536 6.536 27 O -0.512 6.512 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.034 0.966 37 H 0.023 0.977 38 H 0.055 0.945 39 H 0.027 0.973 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.027 0.973 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.028 0.972 46 H 0.150 0.850 47 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.375 5.284 -9.768 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 C -0.202 4.202 4 C 0.013 3.987 5 N -0.130 5.130 6 H 0.253 0.747 7 C -0.079 4.079 8 C -0.010 4.010 9 N -0.252 5.252 10 C -0.095 4.095 11 C 0.054 3.946 12 N -0.318 5.318 13 C -0.383 4.383 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.732 3.268 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.022 3.978 22 C -0.084 4.084 23 C -0.147 4.147 24 C -0.243 4.243 25 C 0.410 3.590 26 O -0.429 6.429 27 O -0.323 6.323 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.052 0.948 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.168 0.832 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 14.908 5.176 -9.849 18.602 hybrid contribution -0.835 1.181 0.412 1.504 sum 14.073 6.357 -9.437 18.097 Atomic orbital electron populations 1.21857 0.93648 1.02871 1.02090 1.20258 0.96253 0.95853 0.94689 1.21844 1.01491 0.94844 1.02039 1.20439 0.97476 0.95141 0.85602 1.41614 1.40876 1.25401 1.05068 0.74674 1.20107 1.01317 0.94373 0.92133 1.20624 0.95507 0.97421 0.87414 1.62004 1.00853 1.50144 1.12179 1.22945 0.92433 0.96150 0.98004 1.20808 0.93071 0.96464 0.84239 1.44112 1.11654 1.71010 1.05041 1.19213 0.84781 1.41771 0.92565 0.91584 1.25034 0.97237 0.99766 0.97596 1.70040 1.20539 1.45033 1.19039 0.86280 0.81977 0.79051 0.79502 1.21579 1.21705 1.20386 1.20976 0.85865 0.94281 0.96706 1.22642 1.00029 0.99435 0.86317 1.21737 1.03378 0.99525 0.90082 1.19182 1.12307 1.01026 0.91785 1.19843 0.74129 0.77360 0.87689 1.90792 1.58103 1.67915 1.26050 1.84618 1.64005 1.40982 1.42658 0.92874 0.91790 0.91623 0.86056 0.92247 0.91592 0.93089 0.88751 0.94794 0.95904 0.92621 0.95524 0.89531 0.93611 0.95530 0.92516 0.91686 0.95368 0.83244 0.73521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.17 37.15 0.34 -1.20 16 2 C -0.05 -0.56 3.25 -91.77 -0.30 -0.86 16 3 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 4 C 0.13 1.69 5.73 -81.51 -0.47 1.22 16 5 N -0.53 -6.43 4.89 -5.21 -0.03 -6.45 16 6 H 0.42 4.34 8.54 -40.82 -0.35 3.99 16 7 C 0.03 0.39 5.85 -81.90 -0.48 -0.09 16 8 C 0.12 1.56 5.49 -4.98 -0.03 1.54 16 9 N -0.53 -8.89 4.62 -235.78 -1.09 -9.98 16 10 C 0.03 0.64 5.47 -3.70 -0.02 0.62 16 11 C 0.18 4.31 5.42 -3.60 -0.02 4.29 16 12 N -0.59 -14.89 3.04 -172.01 -0.52 -15.41 16 13 C -0.25 -6.92 9.63 -15.06 -0.15 -7.06 16 14 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 15 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 16 N -0.90 -26.11 11.19 55.49 0.62 -25.49 16 17 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.15 3.09 6.69 -3.60 -0.02 3.07 16 22 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 23 C -0.12 -1.68 10.89 -37.49 -0.41 -2.09 16 24 C -0.23 -3.27 6.33 -103.01 -0.65 -3.92 16 25 C 0.56 7.62 8.32 34.33 0.29 7.91 16 26 O -0.54 -8.02 15.32 -19.31 -0.30 -8.32 16 27 O -0.51 -5.54 13.33 -40.72 -0.54 -6.08 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.12 1.51 5.56 -51.93 -0.29 1.22 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 1.09 7.97 -51.93 -0.41 0.67 16 36 H 0.03 0.42 8.13 -51.93 -0.42 0.00 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.96 5.86 -51.93 -0.30 0.65 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 2.29 6.14 -51.93 -0.32 1.97 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 44 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 47 H 0.41 2.39 9.11 45.56 0.42 2.81 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -32.52 378.18 -9.57 -42.10 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.71 Total: 4.27 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.68 Total: 3.20 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -1.02 Total: -57.33 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.84 Total: -14.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.52 -9.57 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591912147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.098 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds