Wall clock time and date at job start Tue Mar 31 2020 12:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30258 * 125.61825 * 2 1 4 4 C 1.34477 * 108.70110 * 179.77885 * 3 2 1 5 5 C 1.34326 * 107.66985 * 0.39417 * 4 3 2 6 6 C 1.50698 * 126.44436 * 179.88256 * 5 4 3 7 7 C 1.50697 * 109.47637 * 89.70522 * 6 5 4 8 8 O 1.21280 * 119.99648 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00332 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00181 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47481 * 325.00063 * 10 9 7 12 12 C 1.53000 * 109.47173 * 85.00208 * 10 9 7 13 13 C 1.53004 * 109.47456 * 205.00362 * 10 9 7 14 14 H 1.09001 * 109.49662 * 59.93012 * 13 10 9 15 15 C 1.53033 * 109.50107 * 180.02562 * 13 10 9 16 16 C 1.53044 * 109.53925 * 181.31719 * 15 13 10 17 17 C 1.53191 * 109.30893 * 298.63366 * 16 15 13 18 18 N 1.46924 * 108.77771 * 54.63425 * 17 16 15 19 19 C 1.36938 * 120.62942 * 126.40804 * 18 17 16 20 20 H 1.07998 * 120.00464 * 207.67468 * 19 18 17 21 21 C 1.38815 * 119.99965 * 27.67845 * 19 18 17 22 22 N 1.31624 * 119.99987 * 17.35371 * 21 19 18 23 23 Si 1.86797 * 120.00047 * 197.35324 * 21 19 18 24 24 H 1.48500 * 109.47246 * 90.00322 * 23 21 19 25 25 H 1.48507 * 109.47244 * 209.99866 * 23 21 19 26 26 H 1.48492 * 109.47148 * 329.99872 * 23 21 19 27 27 C 1.46923 * 118.73842 * 306.39201 * 18 17 16 28 28 O 1.33963 * 125.62426 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46786 * 269.97310 * 1 2 3 30 30 H 1.08998 * 109.47442 * 29.97547 * 1 2 3 31 31 H 1.09001 * 109.47081 * 149.98056 * 1 2 3 32 32 H 1.08004 * 126.16434 * 180.26626 * 4 3 2 33 33 H 1.09002 * 109.46798 * 329.70097 * 6 5 4 34 34 H 1.09003 * 109.46824 * 209.70554 * 6 5 4 35 35 H 0.97007 * 119.99681 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.47403 * 300.00199 * 12 10 9 37 37 H 1.09007 * 109.46982 * 60.00055 * 12 10 9 38 38 H 1.09000 * 109.47200 * 179.97438 * 12 10 9 39 39 H 1.09006 * 109.45829 * 301.33466 * 15 13 10 40 40 H 1.09001 * 109.46458 * 61.30640 * 15 13 10 41 41 H 1.09000 * 109.49697 * 58.58386 * 16 15 13 42 42 H 1.08999 * 109.49662 * 178.64769 * 16 15 13 43 43 H 1.09004 * 109.57941 * 174.42388 * 17 16 15 44 44 H 1.09002 * 109.58641 * 294.84155 * 17 16 15 45 45 H 0.97002 * 119.99903 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.58492 * 293.81771 * 27 18 17 47 47 H 1.08996 * 109.58305 * 173.39398 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0049 5 6 3.5698 -0.6756 -0.0008 6 6 4.7938 -1.5547 -0.0008 7 6 5.2017 -1.8481 1.4199 8 8 4.5613 -1.3888 2.3418 9 7 6.2776 -2.6216 1.6661 10 6 6.6745 -2.9062 3.0473 11 1 6.4727 -2.0348 3.6703 12 6 5.8775 -4.1028 3.5706 13 6 8.1692 -3.2300 3.0921 14 1 8.7373 -2.3782 2.7182 15 6 8.5843 -3.5281 4.5345 16 6 10.0858 -3.8200 4.5851 17 6 10.3912 -5.0534 3.7294 18 7 9.8648 -4.8319 2.3757 19 6 10.6746 -4.9729 1.2805 20 1 10.4678 -4.4132 0.3803 21 6 11.7614 -5.8353 1.3273 22 7 11.8289 -6.7587 2.2628 23 14 13.1278 -5.6853 0.0626 24 1 14.1657 -4.7489 0.5638 25 1 13.7362 -7.0201 -0.1696 26 1 12.5682 -5.1680 -1.2119 27 6 8.4529 -4.4567 2.2194 28 8 2.2873 -1.0889 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 4.4156 1.3163 0.0102 33 1 5.6081 -1.0438 -0.5146 34 1 4.5696 -2.4895 -0.5148 35 1 6.7896 -2.9892 0.9288 36 1 4.8127 -3.8722 3.5388 37 1 6.0793 -4.9743 2.9476 38 1 6.1731 -4.3149 4.5981 39 1 8.3607 -2.6656 5.1624 40 1 8.0335 -4.3952 4.8992 41 1 10.6363 -2.9628 4.1975 42 1 10.3852 -4.0086 5.6161 43 1 11.4693 -5.2071 3.6817 44 1 9.9142 -5.9298 4.1682 45 1 12.5885 -7.3611 2.2957 46 1 7.8177 -5.2845 2.5350 47 1 8.2521 -4.2168 1.1753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752837409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:15 Heat of formation + Delta-G solvation = -4.118257 kcal Electronic energy + Delta-G solvation = -27299.033145 eV Core-core repulsion = 23483.771543 eV Total energy + Delta-G solvation = -3815.261602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.48049 -39.98273 -38.10211 -35.26720 -34.89198 -33.44189 -33.03118 -31.40453 -30.51348 -30.24304 -28.14657 -26.27885 -25.34157 -23.91341 -22.60805 -22.24235 -21.47313 -20.66934 -20.19219 -18.67496 -17.59176 -17.15508 -16.77991 -16.40596 -15.96160 -15.45865 -14.93002 -14.62326 -14.50123 -14.17926 -14.02994 -13.75505 -13.51229 -13.36724 -13.24619 -13.11974 -12.90410 -12.66363 -12.42372 -12.33498 -12.17918 -11.83322 -11.64096 -11.40144 -11.03514 -10.97949 -10.70897 -10.61815 -10.52056 -10.22113 -10.19203 -9.98904 -9.90982 -9.64882 -9.44018 -8.99777 -8.82479 -8.50946 -6.72362 -5.84045 -3.26856 1.24232 2.37925 2.52211 2.56701 3.25251 3.33393 3.40472 3.41495 3.85708 4.39552 4.43251 4.69031 4.75145 4.82126 5.02212 5.03171 5.05632 5.17142 5.21264 5.30097 5.34491 5.38763 5.53345 5.64062 5.65693 5.67808 5.81166 5.82817 5.96904 6.08976 6.16963 6.18037 6.20620 6.29883 6.44408 6.53511 6.58773 6.66730 6.73485 6.82931 6.93070 7.36020 7.49682 7.56317 7.62944 7.73502 8.17136 8.39078 9.15403 9.79074 10.35586 11.24004 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.002578 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.013896 B =10859.984622 C =11731.525734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.187 3.813 3 N -0.484 5.484 4 C -0.025 4.025 5 C -0.024 4.024 6 C -0.059 4.059 7 C 0.513 3.487 8 O -0.537 6.537 9 N -0.717 5.717 10 C 0.150 3.850 11 H 0.081 0.919 12 C -0.165 4.165 13 C -0.112 4.112 14 H 0.072 0.928 15 C -0.101 4.101 16 C -0.143 4.143 17 C 0.169 3.831 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.152 3.848 28 O -0.197 6.197 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.182 0.818 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.404 0.596 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.017 0.983 45 H 0.254 0.746 46 H 0.025 0.975 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.721 9.840 -2.982 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 N -0.214 5.214 4 C -0.164 4.164 5 C -0.077 4.077 6 C -0.099 4.099 7 C 0.298 3.702 8 O -0.414 6.414 9 N -0.369 5.369 10 C 0.046 3.954 11 H 0.099 0.901 12 C -0.223 4.223 13 C -0.133 4.133 14 H 0.091 0.909 15 C -0.139 4.139 16 C -0.182 4.182 17 C 0.044 3.956 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.025 3.975 28 O -0.084 6.084 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.200 0.800 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.240 0.760 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.042 0.958 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.295 10.582 -2.310 20.406 hybrid contribution 1.444 -0.840 -0.920 1.907 sum -15.851 9.741 -3.230 18.883 Atomic orbital electron populations 1.20242 0.81396 1.04952 1.04726 1.26236 0.96415 0.78678 1.00623 1.70418 1.02069 1.30307 1.18643 1.22973 0.95114 0.92783 1.05545 1.22473 0.83120 0.94789 1.07362 1.20100 0.92304 1.00917 0.96610 1.20270 0.80771 0.78620 0.90515 1.90733 1.52993 1.51619 1.46018 1.46169 1.29613 1.51229 1.09919 1.21041 0.94641 0.98124 0.81622 0.90050 1.22258 0.99694 0.98469 1.01885 1.21954 0.92156 1.01000 0.98222 0.90943 1.21437 0.97506 1.00244 0.94737 1.22182 0.94789 1.01639 0.99567 1.20798 1.00700 0.91181 0.82956 1.44023 1.04167 1.80561 1.02571 1.19158 1.06860 1.18846 0.93537 0.91741 1.25037 1.00768 0.95435 0.98362 1.70041 1.30388 1.18322 1.35733 0.86300 0.82510 0.76930 0.81061 1.21446 1.21775 1.20459 1.20964 0.87564 0.92955 0.96005 1.84346 1.16523 1.37768 1.69770 0.88928 0.88167 0.89414 0.80044 0.85335 0.86689 0.75990 0.92975 0.91619 0.91316 0.93536 0.92164 0.92802 0.93205 0.89553 0.96448 0.93599 0.95759 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.02 16 2 C 0.19 2.15 8.34 -12.95 -0.11 2.04 16 3 N -0.48 -6.41 11.29 -11.10 -0.13 -6.53 16 4 C -0.03 -0.31 11.80 -17.77 -0.21 -0.52 16 5 C -0.02 -0.29 5.88 -35.69 -0.21 -0.50 16 6 C -0.06 -0.55 6.25 -29.04 -0.18 -0.73 16 7 C 0.51 6.54 7.79 -10.99 -0.09 6.46 16 8 O -0.54 -9.09 15.70 5.56 0.09 -9.00 16 9 N -0.72 -8.72 5.00 -53.81 -0.27 -8.99 16 10 C 0.15 2.08 2.41 -67.93 -0.16 1.92 16 11 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 12 C -0.17 -2.25 8.79 37.16 0.33 -1.92 16 13 C -0.11 -1.77 2.33 -90.50 -0.21 -1.98 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.10 -1.61 4.77 -26.69 -0.13 -1.74 16 16 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 17 C 0.17 3.89 5.31 -3.71 -0.02 3.87 16 18 N -0.59 -13.93 2.99 -172.32 -0.52 -14.44 16 19 C -0.25 -6.63 9.59 -15.06 -0.14 -6.78 16 20 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 21 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 22 N -0.90 -25.43 11.19 55.49 0.62 -24.81 16 23 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C 0.15 2.84 5.30 -3.71 -0.02 2.82 16 28 O -0.20 -2.51 10.77 5.37 0.06 -2.45 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 33 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 4.30 6.98 -40.82 -0.28 4.02 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.91 6.32 -51.93 -0.33 0.58 16 38 H 0.07 0.90 6.46 -51.93 -0.34 0.57 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.95 6.50 -51.93 -0.34 0.61 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 2.24 6.04 -51.93 -0.31 1.93 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.02 0.47 6.18 -51.93 -0.32 0.15 16 47 H 0.05 0.83 6.52 -51.93 -0.34 0.49 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -33.72 374.29 -7.83 -41.55 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.27 Total: 2.87 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.02 Total: 0.18 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.29 Total: -54.77 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.15 Total: -11.46 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.72 -7.83 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752837409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.432 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds