Wall clock time and date at job start Tue Mar 31 2020 12:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30258 * 125.61825 * 2 1 4 4 C 1.34477 * 108.70110 * 179.77885 * 3 2 1 5 5 C 1.34326 * 107.66985 * 0.39417 * 4 3 2 6 6 C 1.50698 * 126.44436 * 179.88256 * 5 4 3 7 7 C 1.50697 * 109.47637 * 89.70522 * 6 5 4 8 8 O 1.21280 * 119.99648 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00332 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00181 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47481 * 325.00063 * 10 9 7 12 12 C 1.53000 * 109.47173 * 85.00208 * 10 9 7 13 13 C 1.53004 * 109.47456 * 205.00362 * 10 9 7 14 14 H 1.09001 * 109.49662 * 59.93012 * 13 10 9 15 15 C 1.53033 * 109.50107 * 180.02562 * 13 10 9 16 16 C 1.53044 * 109.53925 * 181.31719 * 15 13 10 17 17 C 1.53191 * 109.30893 * 298.63366 * 16 15 13 18 18 N 1.46924 * 108.77771 * 54.63425 * 17 16 15 19 19 C 1.36938 * 120.62942 * 126.40804 * 18 17 16 20 20 H 1.07998 * 120.00464 * 207.67468 * 19 18 17 21 21 C 1.38815 * 119.99965 * 27.67845 * 19 18 17 22 22 N 1.31624 * 119.99987 * 17.35371 * 21 19 18 23 23 Si 1.86797 * 120.00047 * 197.35324 * 21 19 18 24 24 H 1.48500 * 109.47246 * 90.00322 * 23 21 19 25 25 H 1.48507 * 109.47244 * 209.99866 * 23 21 19 26 26 H 1.48492 * 109.47148 * 329.99872 * 23 21 19 27 27 C 1.46923 * 118.73842 * 306.39201 * 18 17 16 28 28 O 1.33963 * 125.62426 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46786 * 269.97310 * 1 2 3 30 30 H 1.08998 * 109.47442 * 29.97547 * 1 2 3 31 31 H 1.09001 * 109.47081 * 149.98056 * 1 2 3 32 32 H 1.08004 * 126.16434 * 180.26626 * 4 3 2 33 33 H 1.09002 * 109.46798 * 329.70097 * 6 5 4 34 34 H 1.09003 * 109.46824 * 209.70554 * 6 5 4 35 35 H 0.97007 * 119.99681 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.47403 * 300.00199 * 12 10 9 37 37 H 1.09007 * 109.46982 * 60.00055 * 12 10 9 38 38 H 1.09000 * 109.47200 * 179.97438 * 12 10 9 39 39 H 1.09006 * 109.45829 * 301.33466 * 15 13 10 40 40 H 1.09001 * 109.46458 * 61.30640 * 15 13 10 41 41 H 1.09000 * 109.49697 * 58.58386 * 16 15 13 42 42 H 1.08999 * 109.49662 * 178.64769 * 16 15 13 43 43 H 1.09004 * 109.57941 * 174.42388 * 17 16 15 44 44 H 1.09002 * 109.58641 * 294.84155 * 17 16 15 45 45 H 0.97002 * 119.99903 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.58492 * 293.81771 * 27 18 17 47 47 H 1.08996 * 109.58305 * 173.39398 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0049 5 6 3.5698 -0.6756 -0.0008 6 6 4.7938 -1.5547 -0.0008 7 6 5.2017 -1.8481 1.4199 8 8 4.5613 -1.3888 2.3418 9 7 6.2776 -2.6216 1.6661 10 6 6.6745 -2.9062 3.0473 11 1 6.4727 -2.0348 3.6703 12 6 5.8775 -4.1028 3.5706 13 6 8.1692 -3.2300 3.0921 14 1 8.7373 -2.3782 2.7182 15 6 8.5843 -3.5281 4.5345 16 6 10.0858 -3.8200 4.5851 17 6 10.3912 -5.0534 3.7294 18 7 9.8648 -4.8319 2.3757 19 6 10.6746 -4.9729 1.2805 20 1 10.4678 -4.4132 0.3803 21 6 11.7614 -5.8353 1.3273 22 7 11.8289 -6.7587 2.2628 23 14 13.1278 -5.6853 0.0626 24 1 14.1657 -4.7489 0.5638 25 1 13.7362 -7.0201 -0.1696 26 1 12.5682 -5.1680 -1.2119 27 6 8.4529 -4.4567 2.2194 28 8 2.2873 -1.0889 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 4.4156 1.3163 0.0102 33 1 5.6081 -1.0438 -0.5146 34 1 4.5696 -2.4895 -0.5148 35 1 6.7896 -2.9892 0.9288 36 1 4.8127 -3.8722 3.5388 37 1 6.0793 -4.9743 2.9476 38 1 6.1731 -4.3149 4.5981 39 1 8.3607 -2.6656 5.1624 40 1 8.0335 -4.3952 4.8992 41 1 10.6363 -2.9628 4.1975 42 1 10.3852 -4.0086 5.6161 43 1 11.4693 -5.2071 3.6817 44 1 9.9142 -5.9298 4.1682 45 1 12.5885 -7.3611 2.2957 46 1 7.8177 -5.2845 2.5350 47 1 8.2521 -4.2168 1.1753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752837409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:15 Heat of formation + Delta-G solvation = -27.959740 kcal Electronic energy + Delta-G solvation = -27300.066989 eV Core-core repulsion = 23483.771543 eV Total energy + Delta-G solvation = -3816.295446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.33246 -41.09053 -39.49432 -36.69806 -35.77536 -34.69921 -34.17524 -32.61221 -32.23949 -31.10460 -29.47039 -27.21102 -27.06996 -25.17356 -23.91043 -23.46327 -22.54233 -21.91585 -21.27358 -20.09177 -18.78113 -18.34516 -17.99634 -17.41131 -17.05066 -16.77804 -16.39344 -15.90584 -15.64025 -15.43311 -15.12287 -14.99224 -14.76406 -14.67207 -14.15232 -14.09489 -13.97394 -13.82368 -13.67884 -13.30696 -13.28682 -13.03832 -13.02859 -12.76063 -12.68999 -12.29703 -12.25296 -12.05936 -11.91542 -11.69608 -11.59692 -11.49399 -11.27322 -11.07481 -10.96500 -10.49782 -10.09050 -9.66819 -8.63823 -7.84115 -5.28818 0.39288 1.48427 1.50731 1.56885 1.58263 1.58994 1.70679 2.29700 2.53115 3.16047 3.30614 3.58048 3.61826 3.85552 3.95147 4.00369 4.05098 4.07672 4.15106 4.35190 4.39187 4.43214 4.48348 4.62527 4.65719 4.66457 4.69721 4.71765 4.85943 4.90840 4.98351 5.01355 5.02894 5.05982 5.15715 5.21942 5.30255 5.36277 5.38849 5.48839 5.53230 5.60705 5.70407 5.81031 6.41751 6.52865 6.70901 7.17733 7.20402 7.90039 8.41532 9.21906 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.002578 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.013896 B =10859.984622 C =11731.525734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.182 3.818 3 N -0.517 5.517 4 C -0.042 4.042 5 C -0.038 4.038 6 C -0.051 4.051 7 C 0.515 3.485 8 O -0.582 6.582 9 N -0.711 5.711 10 C 0.160 3.840 11 H 0.076 0.924 12 C -0.159 4.159 13 C -0.096 4.096 14 H 0.068 0.932 15 C -0.099 4.099 16 C -0.132 4.132 17 C 0.174 3.826 18 N -0.609 5.609 19 C -0.256 4.256 20 H 0.072 0.928 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.289 1.289 25 H -0.299 1.299 26 H -0.265 1.265 27 C 0.151 3.849 28 O -0.212 6.212 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.198 0.802 33 H 0.163 0.837 34 H 0.139 0.861 35 H 0.414 0.586 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.050 0.950 44 H -0.005 1.005 45 H 0.248 0.752 46 H 0.021 0.979 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.805 10.945 -3.931 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.024 4.024 3 N -0.247 5.247 4 C -0.180 4.180 5 C -0.091 4.091 6 C -0.091 4.091 7 C 0.302 3.698 8 O -0.461 6.461 9 N -0.363 5.363 10 C 0.055 3.945 11 H 0.094 0.906 12 C -0.217 4.217 13 C -0.117 4.117 14 H 0.086 0.914 15 C -0.137 4.137 16 C -0.171 4.171 17 C 0.048 3.952 18 N -0.332 5.332 19 C -0.387 4.387 20 H 0.090 0.910 21 C -0.248 4.248 22 N -0.582 5.582 23 Si 0.792 3.208 24 H -0.216 1.216 25 H -0.226 1.226 26 H -0.189 1.189 27 C 0.025 3.975 28 O -0.100 6.100 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.215 0.785 33 H 0.181 0.819 34 H 0.157 0.843 35 H 0.251 0.749 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.013 0.987 45 H 0.057 0.943 46 H 0.039 0.961 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.389 11.706 -3.287 22.045 hybrid contribution 1.706 -1.174 -0.605 2.158 sum -16.682 10.532 -3.892 20.109 Atomic orbital electron populations 1.20526 0.78286 1.06623 1.05878 1.27262 0.98057 0.78101 0.98971 1.70423 1.02823 1.31338 1.20156 1.23366 0.95501 0.93510 1.05644 1.22921 0.83583 0.95185 1.07389 1.20232 0.92236 1.02150 0.94444 1.20806 0.79957 0.77506 0.91525 1.90719 1.54367 1.53319 1.47738 1.46080 1.29662 1.51037 1.09511 1.20810 0.93116 0.97925 0.82676 0.90567 1.22198 0.99306 0.98052 1.02160 1.21725 0.93395 0.99106 0.97440 0.91355 1.21433 0.95461 1.01480 0.95334 1.22014 0.96727 0.98903 0.99410 1.20609 0.98219 0.92598 0.83789 1.44289 1.06104 1.80664 1.02152 1.19541 1.07013 1.17848 0.94266 0.90992 1.25766 1.03051 0.95619 1.00414 1.70196 1.30777 1.19463 1.37772 0.85325 0.79757 0.76194 0.79535 1.21645 1.22645 1.18909 1.21112 0.84833 0.93943 0.97585 1.84353 1.17112 1.38454 1.70085 0.87847 0.86816 0.87392 0.78513 0.81914 0.84308 0.74885 0.93437 0.91991 0.90792 0.90971 0.91853 0.93248 0.91487 0.93202 0.98671 0.94321 0.96088 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.51 71.24 0.75 0.13 16 2 C 0.18 4.03 8.34 88.34 0.74 4.76 16 3 N -0.52 -13.37 11.29 -303.83 -3.43 -16.80 16 4 C -0.04 -1.00 11.80 83.39 0.98 -0.02 16 5 C -0.04 -0.85 5.88 24.79 0.15 -0.71 16 6 C -0.05 -0.81 6.25 29.10 0.18 -0.63 16 7 C 0.51 12.09 7.79 87.66 0.68 12.78 16 8 O -0.58 -19.06 15.70 -3.03 -0.05 -19.11 16 9 N -0.71 -15.60 5.00 -442.55 -2.21 -17.82 16 10 C 0.16 4.10 2.41 44.99 0.11 4.21 16 11 H 0.08 2.12 7.58 -2.39 -0.02 2.10 16 12 C -0.16 -4.05 8.79 71.98 0.63 -3.42 16 13 C -0.10 -2.83 2.33 -10.72 -0.02 -2.85 16 14 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.10 -2.94 4.77 30.62 0.15 -2.80 16 16 C -0.13 -4.69 6.08 30.67 0.19 -4.50 16 17 C 0.17 8.08 5.31 86.36 0.46 8.54 16 18 N -0.61 -28.54 2.99 -699.10 -2.09 -30.64 16 19 C -0.26 -13.27 9.59 84.03 0.81 -12.47 16 20 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 21 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 22 N -0.94 -54.22 11.19 21.65 0.24 -53.97 16 23 Si 0.96 43.42 29.59 68.60 2.03 45.45 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 27 C 0.15 5.42 5.30 86.36 0.46 5.88 16 28 O -0.21 -5.19 10.77 -3.69 -0.04 -5.23 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.20 3.66 8.06 -2.91 -0.02 3.63 16 33 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.41 7.61 6.98 -92.70 -0.65 6.96 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.62 6.32 -2.38 -0.02 1.60 16 38 H 0.07 1.79 6.46 -2.39 -0.02 1.78 16 39 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.06 1.87 6.50 -2.39 -0.02 1.85 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.05 2.67 6.04 -2.39 -0.01 2.66 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 46 H 0.02 0.79 6.18 -2.39 -0.01 0.78 16 47 H 0.06 1.97 6.52 -2.39 -0.02 1.95 16 Total: -1.00 -74.60 374.29 1.45 -73.15 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.33 Total: 18.52 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 6.67 Total: 6.44 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -7.50 Total: -119.23 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.09 Total: -24.33 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.60 1.45 -73.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752837409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.187 kcal (2) G-P(sol) polarization free energy of solvation -74.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds