Wall clock time and date at job start Tue Mar 31 2020 12:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30257 * 125.62093 * 2 1 4 4 C 1.34478 * 108.70057 * 179.77900 * 3 2 1 5 5 C 1.34327 * 107.66747 * 0.38981 * 4 3 2 6 6 C 1.50704 * 126.44210 * 179.87843 * 5 4 3 7 7 C 1.50700 * 109.46921 * 89.71052 * 6 5 4 8 8 O 1.21273 * 120.00165 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99711 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00099 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.46796 * 34.99682 * 10 9 7 12 12 C 1.53001 * 109.46822 * 274.99960 * 10 9 7 13 13 C 1.52990 * 109.47433 * 154.99843 * 10 9 7 14 14 H 1.09006 * 109.52401 * 60.07898 * 13 10 9 15 15 C 1.53040 * 109.50055 * 180.16153 * 13 10 9 16 16 C 1.53039 * 109.54198 * 181.31572 * 15 13 10 17 17 C 1.53622 * 109.24473 * 298.51455 * 16 15 13 18 18 N 1.46924 * 108.54399 * 54.84806 * 17 16 15 19 19 C 1.36946 * 120.62919 * 126.37114 * 18 17 16 20 20 H 1.08001 * 119.99879 * 207.53220 * 19 18 17 21 21 C 1.38814 * 119.99719 * 27.52961 * 19 18 17 22 22 N 1.31620 * 119.99709 * 25.84717 * 21 19 18 23 23 Si 1.86797 * 119.99712 * 205.56717 * 21 19 18 24 24 H 1.48493 * 109.47196 * 60.00574 * 23 21 19 25 25 H 1.48500 * 109.46719 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47268 * 299.99796 * 23 21 19 27 27 C 1.46928 * 118.74378 * 306.10142 * 18 17 16 28 28 O 1.33970 * 125.62048 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47466 * 269.97839 * 1 2 3 30 30 H 1.09006 * 109.47470 * 29.97662 * 1 2 3 31 31 H 1.09006 * 109.47549 * 149.97600 * 1 2 3 32 32 H 1.08003 * 126.16218 * 180.26731 * 4 3 2 33 33 H 1.09004 * 109.46937 * 329.71581 * 6 5 4 34 34 H 1.09000 * 109.47169 * 209.71669 * 6 5 4 35 35 H 0.96997 * 120.00138 * 0.02562 * 9 7 6 36 36 H 1.09003 * 109.46915 * 60.00057 * 12 10 9 37 37 H 1.09003 * 109.46992 * 179.97438 * 12 10 9 38 38 H 1.08991 * 109.47441 * 299.99470 * 12 10 9 39 39 H 1.08999 * 109.46221 * 301.33947 * 15 13 10 40 40 H 1.09003 * 109.45556 * 61.29650 * 15 13 10 41 41 H 1.09004 * 109.49499 * 58.58593 * 16 15 13 42 42 H 1.08994 * 109.49949 * 178.64805 * 16 15 13 43 43 H 1.09007 * 109.73672 * 295.11836 * 17 16 15 44 44 H 1.08997 * 109.67035 * 174.54572 * 17 16 15 45 45 H 0.96992 * 120.00366 * 4.05609 * 22 21 19 46 46 H 1.08992 * 109.58848 * 173.64203 * 27 18 17 47 47 H 1.08997 * 109.58525 * 294.06878 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5521 0.6675 0.0049 5 6 3.5697 -0.6757 -0.0007 6 6 4.7936 -1.5550 -0.0008 7 6 5.2015 -1.8482 1.4200 8 8 4.5611 -1.3889 2.3418 9 7 6.2780 -2.6210 1.6662 10 6 6.6742 -2.9066 3.0474 11 1 5.7838 -2.9937 3.6702 12 6 7.5537 -1.7694 3.5711 13 6 7.4582 -4.2196 3.0920 14 1 8.3495 -4.1329 2.4706 15 6 7.8690 -4.5206 4.5352 16 6 8.6814 -5.8169 4.5765 17 6 7.8104 -6.9766 4.0702 18 7 7.2971 -6.6286 2.7382 19 6 7.4804 -7.4745 1.6770 20 1 7.5238 -7.0794 0.6728 21 6 7.6105 -8.8397 1.8920 22 7 7.0768 -9.3912 2.9613 23 14 8.5361 -9.8952 0.6598 24 1 9.9368 -9.4144 0.5497 25 1 8.5318 -11.3082 1.1166 26 1 7.8751 -9.8024 -0.6667 27 6 6.5781 -5.3586 2.5677 28 8 2.2872 -1.0890 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 4.4156 1.3162 0.0102 33 1 5.6080 -1.0440 -0.5144 34 1 4.5695 -2.4896 -0.5148 35 1 6.7903 -2.9880 0.9290 36 1 6.9950 -0.8339 3.5394 37 1 7.8481 -1.9816 4.5989 38 1 8.4440 -1.6823 2.9485 39 1 8.4750 -3.6999 4.9190 40 1 6.9765 -4.6316 5.1511 41 1 9.5612 -5.7151 3.9411 42 1 8.9939 -6.0179 5.6011 43 1 6.9758 -7.1357 4.7532 44 1 8.4100 -7.8845 4.0050 45 1 6.5431 -8.8552 3.5684 46 1 6.3646 -5.1987 1.5109 47 1 5.6453 -5.3885 3.1307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752837412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:26 Heat of formation + Delta-G solvation = -34.344444 kcal Electronic energy + Delta-G solvation = -27408.174612 eV Core-core repulsion = 23591.602305 eV Total energy + Delta-G solvation = -3816.572307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.36213 -41.10066 -39.57480 -36.93973 -35.80412 -34.86164 -34.21639 -32.62315 -32.25194 -31.13250 -29.81520 -27.25577 -26.86434 -24.87067 -23.80736 -23.47855 -22.53002 -21.84926 -21.51908 -20.66775 -19.38353 -18.47459 -18.06768 -17.43199 -17.14601 -16.49201 -16.22670 -16.08223 -15.58265 -15.44412 -15.33240 -15.00660 -14.90690 -14.80393 -14.26279 -14.12668 -13.98013 -13.87844 -13.81442 -13.53821 -13.33293 -13.09961 -12.90340 -12.64496 -12.58907 -12.33052 -12.32367 -11.94221 -11.89449 -11.72711 -11.64274 -11.62919 -11.42639 -11.14144 -10.99186 -10.45160 -10.11824 -9.69193 -8.92112 -8.26503 -5.39263 0.36325 1.54189 1.56107 1.59053 1.66653 1.68706 1.85005 2.26096 2.66152 3.13225 3.21410 3.44116 3.56689 3.77944 3.84742 3.94113 3.97484 4.02118 4.12136 4.22203 4.35418 4.36228 4.40047 4.52706 4.58970 4.62022 4.64399 4.66391 4.73924 4.78058 4.85273 4.94658 4.99502 4.99780 5.02678 5.12481 5.16345 5.22241 5.25633 5.36071 5.38433 5.48638 5.56740 5.84112 6.37958 6.49490 6.68009 7.05438 7.18087 7.78380 8.23918 8.99972 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.002862 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.012831 B = 9779.740376 C =10892.142503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.181 3.819 3 N -0.515 5.515 4 C -0.038 4.038 5 C -0.041 4.041 6 C -0.050 4.050 7 C 0.514 3.486 8 O -0.583 6.583 9 N -0.709 5.709 10 C 0.156 3.844 11 H 0.058 0.942 12 C -0.152 4.152 13 C -0.092 4.092 14 H 0.082 0.918 15 C -0.099 4.099 16 C -0.125 4.125 17 C 0.151 3.849 18 N -0.616 5.616 19 C -0.354 4.354 20 H 0.057 0.943 21 C -0.079 4.079 22 N -0.945 5.945 23 Si 1.116 2.884 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.274 1.274 27 C 0.157 3.843 28 O -0.216 6.216 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.203 0.797 33 H 0.170 0.830 34 H 0.132 0.868 35 H 0.415 0.585 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.072 0.928 43 H -0.005 1.005 44 H 0.043 0.957 45 H 0.252 0.748 46 H 0.055 0.945 47 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 19.535 -6.280 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.025 4.025 3 N -0.245 5.245 4 C -0.176 4.176 5 C -0.094 4.094 6 C -0.090 4.090 7 C 0.301 3.699 8 O -0.463 6.463 9 N -0.361 5.361 10 C 0.051 3.949 11 H 0.076 0.924 12 C -0.210 4.210 13 C -0.113 4.113 14 H 0.101 0.899 15 C -0.137 4.137 16 C -0.164 4.164 17 C 0.025 3.975 18 N -0.340 5.340 19 C -0.483 4.483 20 H 0.075 0.925 21 C -0.275 4.275 22 N -0.587 5.587 23 Si 0.940 3.060 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.200 1.200 27 C 0.031 3.969 28 O -0.104 6.104 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.124 0.876 32 H 0.220 0.780 33 H 0.188 0.812 34 H 0.150 0.850 35 H 0.252 0.748 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.013 0.987 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges -2.933 18.879 -5.976 20.018 hybrid contribution -0.440 0.263 0.393 0.647 sum -3.374 19.142 -5.583 20.222 Atomic orbital electron populations 1.20524 0.78436 1.06617 1.05823 1.27247 0.98059 0.78105 0.99081 1.70424 1.02849 1.31136 1.20123 1.23389 0.95533 0.93278 1.05390 1.22970 0.83531 0.95350 1.07587 1.20236 0.92446 1.01942 0.94344 1.20829 0.79727 0.77811 0.91552 1.90720 1.54630 1.53107 1.47816 1.45966 1.29722 1.50979 1.09398 1.20838 0.97228 0.94179 0.82691 0.92357 1.22114 0.99612 0.96912 1.02367 1.21725 0.98719 0.92561 0.98260 0.89927 1.21459 0.99625 0.97483 0.95141 1.21983 0.98359 0.95402 1.00611 1.20950 0.94345 0.96752 0.85434 1.44387 1.63465 1.19784 1.06401 1.20244 1.49380 0.90137 0.88587 0.92496 1.27232 1.00754 0.96390 1.03145 1.70915 1.32791 1.37944 1.17091 0.82844 0.75823 0.73981 0.73336 1.20272 1.22275 1.20020 1.20963 0.91890 0.85731 0.98285 1.84371 1.17347 1.38641 1.70040 0.87958 0.86587 0.87619 0.78045 0.81228 0.85012 0.74763 0.93335 0.90409 0.90740 0.89101 0.93350 0.92215 0.90930 0.98664 0.93889 0.93848 0.92623 0.99006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.51 71.23 0.75 0.01 16 2 C 0.18 4.30 8.34 88.34 0.74 5.04 16 3 N -0.52 -13.65 11.29 -303.83 -3.43 -17.08 16 4 C -0.04 -0.90 11.80 83.39 0.98 0.08 16 5 C -0.04 -0.98 5.88 24.79 0.15 -0.84 16 6 C -0.05 -0.84 6.25 29.10 0.18 -0.66 16 7 C 0.51 12.63 7.79 87.66 0.68 13.31 16 8 O -0.58 -20.09 15.70 -3.01 -0.05 -20.13 16 9 N -0.71 -15.61 4.48 -442.54 -1.98 -17.59 16 10 C 0.16 4.01 2.16 44.99 0.10 4.10 16 11 H 0.06 1.85 7.58 -2.38 -0.02 1.83 16 12 C -0.15 -3.17 9.14 71.98 0.66 -2.52 16 13 C -0.09 -2.72 1.97 -10.72 -0.02 -2.74 16 14 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 15 C -0.10 -2.89 4.85 30.62 0.15 -2.74 16 16 C -0.12 -4.32 6.10 30.82 0.19 -4.14 16 17 C 0.15 7.07 4.72 86.51 0.41 7.48 16 18 N -0.62 -30.10 2.85 -698.25 -1.99 -32.09 16 19 C -0.35 -19.21 9.49 84.03 0.80 -18.42 16 20 H 0.06 3.01 7.95 -2.91 -0.02 2.99 16 21 C -0.08 -4.45 4.66 84.86 0.40 -4.05 16 22 N -0.95 -57.85 12.46 21.65 0.27 -57.58 16 23 Si 1.12 49.79 29.99 68.60 2.06 51.85 16 24 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 C 0.16 6.23 5.55 86.36 0.48 6.71 16 28 O -0.22 -5.80 10.78 -3.69 -0.04 -5.84 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.20 3.54 8.06 -2.91 -0.02 3.52 16 33 H 0.17 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.42 7.09 8.42 -92.71 -0.78 6.31 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.49 6.41 -2.39 -0.02 1.48 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 2.06 6.37 -2.39 -0.02 2.04 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.00 -0.23 7.87 -2.38 -0.02 -0.25 16 44 H 0.04 2.29 6.31 -2.39 -0.02 2.28 16 45 H 0.25 15.84 6.69 -92.71 -0.62 15.22 16 46 H 0.06 2.13 7.44 -2.39 -0.02 2.11 16 47 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: -1.00 -80.13 378.85 1.81 -78.32 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.34 Total: 19.52 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.63 Total: 0.62 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -7.13 Total: -124.34 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.09 Total: -25.97 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.06 Total: 51.85 kcal Total: -80.13 1.81 -78.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752837412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.972 kcal (2) G-P(sol) polarization free energy of solvation -80.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds