Wall clock time and date at job start Tue Mar 31 2020 13:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47050 * 2 1 4 4 N 1.33693 * 126.27624 * 270.19116 * 3 2 1 5 5 C 1.30612 * 108.99486 * 180.26996 * 4 3 2 6 6 O 1.33657 * 109.15801 * 359.72739 * 5 4 3 7 7 C 1.35349 * 107.68261 * 0.02562 * 6 5 4 8 8 C 1.46723 * 126.64253 * 179.97438 * 7 6 5 9 9 O 1.21688 * 119.99665 * 172.73635 * 8 7 6 10 10 N 1.34776 * 120.00004 * 352.74617 * 8 7 6 11 11 C 1.46923 * 120.63242 * 353.46267 * 10 8 7 12 12 C 1.53192 * 108.77655 * 126.67187 * 11 10 8 13 13 C 1.53045 * 109.31199 * 54.63448 * 12 11 10 14 14 C 1.53041 * 109.53526 * 298.63507 * 13 12 11 15 15 H 1.09001 * 109.50198 * 301.41478 * 14 13 12 16 16 C 1.53003 * 109.52140 * 181.33229 * 14 13 12 17 17 C 1.46926 * 120.62719 * 173.75211 * 10 8 7 18 18 H 1.09000 * 109.58883 * 113.40232 * 17 10 8 19 19 C 1.52999 * 109.58708 * 353.10992 * 17 10 8 20 20 N 1.46503 * 109.46724 * 73.71890 * 19 17 10 21 21 C 1.36942 * 119.99876 * 184.31084 * 20 19 17 22 22 H 1.07999 * 119.99862 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99934 * 180.02562 * 21 20 19 24 24 N 1.31616 * 119.99879 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00046 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47104 * 89.99943 * 25 23 21 27 27 H 1.48497 * 109.47329 * 210.00446 * 25 23 21 28 28 H 1.48511 * 109.46954 * 330.00105 * 25 23 21 29 29 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47420 * 299.99874 * 1 2 3 31 31 H 1.09004 * 109.47114 * 60.00280 * 1 2 3 32 32 H 1.09005 * 109.46738 * 240.00332 * 2 1 3 33 33 H 1.08991 * 109.46871 * 120.00320 * 2 1 3 34 34 H 1.08009 * 125.42193 * 179.70971 * 5 4 3 35 35 H 1.09002 * 109.58727 * 246.45576 * 11 10 8 36 36 H 1.08998 * 109.58644 * 6.88621 * 11 10 8 37 37 H 1.09003 * 109.49642 * 294.68364 * 12 11 10 38 38 H 1.08994 * 109.50059 * 174.58748 * 12 11 10 39 39 H 1.08995 * 109.45604 * 178.61929 * 13 12 11 40 40 H 1.08997 * 109.45680 * 58.65829 * 13 12 11 41 41 H 1.09005 * 109.47139 * 300.15164 * 16 14 13 42 42 H 1.08998 * 109.46985 * 60.14704 * 16 14 13 43 43 H 1.09001 * 109.47319 * 180.14924 * 16 14 13 44 44 H 1.09005 * 109.46978 * 193.71534 * 19 17 10 45 45 H 1.08991 * 109.47336 * 313.72081 * 19 17 10 46 46 H 0.96998 * 119.99779 * 4.31709 * 20 19 17 47 47 H 0.96995 * 119.99811 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2926 2.1678 -1.0778 5 6 2.7150 3.3413 -0.6898 6 8 2.7318 3.3818 0.6460 7 6 2.3017 2.1811 1.0992 8 6 2.1587 1.7745 2.5017 9 8 1.6357 0.7107 2.7764 10 7 2.6064 2.5794 3.4856 11 6 3.3658 3.7968 3.1697 12 6 2.6984 4.9883 3.8637 13 6 2.5729 4.6967 5.3609 14 6 1.6937 3.4615 5.5696 15 1 0.7117 3.6353 5.1296 16 6 1.5411 3.1898 7.0676 17 6 2.3497 2.2527 4.8949 18 1 3.2907 2.0196 5.3933 19 6 1.4120 1.0467 4.9793 20 7 2.1468 -0.1691 4.6216 21 6 1.4892 -1.3676 4.5401 22 1 0.4288 -1.4163 4.7393 23 6 2.1855 -2.5197 4.2017 24 7 1.5534 -3.6715 4.1229 25 14 4.0197 -2.4355 3.8580 26 1 4.7704 -2.6511 5.1210 27 1 4.3884 -3.4878 2.8772 28 1 4.3585 -1.1006 3.3024 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.0049 4.1501 -1.3443 35 1 4.3899 3.6920 3.5279 36 1 3.3682 3.9565 2.0914 37 1 1.7070 5.1477 3.4397 38 1 3.3054 5.8817 3.7168 39 1 2.1206 5.5531 5.8609 40 1 3.5625 4.5130 5.7792 41 1 2.5235 3.0173 7.5075 42 1 1.0744 4.0501 7.5472 43 1 0.9170 2.3085 7.2153 44 1 1.0295 0.9543 5.9959 45 1 0.5798 1.1846 4.2891 46 1 3.0991 -0.1253 4.4425 47 1 2.0399 -4.4765 3.8861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753809000.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:59 Heat of formation + Delta-G solvation = 44.978824 kcal Electronic energy + Delta-G solvation = -29773.853298 eV Core-core repulsion = 25960.720705 eV Total energy + Delta-G solvation = -3813.132592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.36807 -40.25230 -37.49812 -35.59443 -34.84499 -33.48692 -32.67002 -32.16052 -30.66240 -29.48775 -27.31462 -26.15652 -24.68761 -23.66056 -23.19048 -22.17404 -21.65185 -20.72711 -20.18587 -19.44336 -17.58837 -17.01864 -16.72828 -16.52501 -15.75072 -15.11531 -14.78765 -14.70912 -14.39656 -14.16471 -14.03469 -13.71993 -13.43327 -13.21188 -12.99875 -12.77426 -12.57854 -12.46798 -12.36671 -12.20901 -11.84248 -11.66264 -11.25975 -11.13227 -11.08355 -10.96113 -10.80676 -10.76239 -10.67868 -10.55766 -10.32860 -10.19338 -9.94623 -9.40764 -8.91139 -8.84059 -8.59636 -8.25345 -6.83480 -5.56273 -2.82454 1.03625 2.51435 2.58945 3.22619 3.45757 3.50670 3.52636 3.56477 4.09742 4.58791 4.73711 4.75990 4.77130 4.86895 4.92010 4.93610 5.21487 5.28570 5.44216 5.50089 5.58346 5.61634 5.65998 5.72210 5.73861 5.75042 5.77081 5.79240 5.80140 5.83122 5.98983 6.03786 6.10896 6.17654 6.25037 6.30802 6.39373 6.42127 6.52172 6.62508 6.68744 6.79811 7.05717 7.54086 7.75375 8.18119 8.55153 8.62366 9.41474 10.14721 10.35218 11.63518 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.009063 B = 0.007568 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.579148 B = 3698.985655 C = 5861.069655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 C 0.071 3.929 4 N -0.488 5.488 5 C 0.169 3.831 6 O -0.192 6.192 7 C -0.095 4.095 8 C 0.557 3.443 9 O -0.407 6.407 10 N -0.609 5.609 11 C 0.094 3.906 12 C -0.131 4.131 13 C -0.114 4.114 14 C -0.098 4.098 15 H 0.075 0.925 16 C -0.147 4.147 17 C 0.145 3.855 18 H 0.070 0.930 19 C 0.162 3.838 20 N -0.721 5.721 21 C -0.201 4.201 22 H 0.086 0.914 23 C -0.002 4.002 24 N -0.942 5.942 25 Si 0.878 3.122 26 H -0.290 1.290 27 H -0.295 1.295 28 H -0.282 1.282 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.248 0.752 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.030 0.970 45 H 0.047 0.953 46 H 0.355 0.645 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 21.362 -3.659 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.052 4.052 4 N -0.217 5.217 5 C -0.056 4.056 6 O -0.079 6.079 7 C -0.150 4.150 8 C 0.341 3.659 9 O -0.275 6.275 10 N -0.345 5.345 11 C -0.029 4.029 12 C -0.169 4.169 13 C -0.151 4.151 14 C -0.118 4.118 15 H 0.093 0.907 16 C -0.205 4.205 17 C 0.042 3.958 18 H 0.088 0.912 19 C 0.035 3.965 20 N -0.365 5.365 21 C -0.331 4.331 22 H 0.104 0.896 23 C -0.196 4.196 24 N -0.592 5.592 25 Si 0.710 3.290 26 H -0.217 1.217 27 H -0.221 1.221 28 H -0.209 1.209 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.264 0.736 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.188 0.812 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.394 20.430 -4.091 20.973 hybrid contribution 1.746 0.561 0.000 1.834 sum 4.140 20.991 -4.091 21.783 Atomic orbital electron populations 1.21555 0.93739 1.02457 1.01243 1.20159 0.96854 0.87409 1.04545 1.22075 0.98582 0.98288 0.86237 1.70295 1.16440 1.03160 1.31825 1.28254 0.98965 0.97771 0.80582 1.84590 1.65023 1.34857 1.23463 1.23678 1.09838 0.84478 0.97029 1.16870 0.83135 0.84974 0.80944 1.91465 1.38899 1.18615 1.78498 1.47795 1.56223 1.24610 1.05913 1.22120 0.94670 0.84126 1.01939 1.21882 1.01452 0.97516 0.96053 1.21593 1.00154 0.97628 0.95763 1.21468 0.99529 0.94399 0.96417 0.90689 1.21863 1.02248 1.02052 0.94302 1.21618 0.99385 0.95294 0.79459 0.91205 1.20927 0.94095 0.84061 0.97424 1.42607 1.06726 1.04106 1.83058 1.18944 0.94464 0.83158 1.36584 0.89584 1.24510 0.96630 0.95539 1.02885 1.69685 1.34526 0.98278 1.56750 0.86627 0.88225 0.76506 0.77657 1.21719 1.22141 1.20879 0.91546 0.92177 0.93627 0.90735 0.87547 0.73621 0.91929 0.87918 0.91601 0.91087 0.91779 0.91854 0.92578 0.92720 0.91327 0.95231 0.93528 0.81218 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.89 37.16 0.37 -1.84 16 2 C -0.05 -0.93 5.85 -27.88 -0.16 -1.09 16 3 C 0.07 1.21 6.41 -82.47 -0.53 0.69 16 4 N -0.49 -7.32 11.26 -10.89 -0.12 -7.44 16 5 C 0.17 1.87 13.21 52.24 0.69 2.56 16 6 O -0.19 -2.48 7.34 4.43 0.03 -2.44 16 7 C -0.10 -1.58 6.85 -36.84 -0.25 -1.83 16 8 C 0.56 10.23 7.38 -12.83 -0.09 10.13 16 9 O -0.41 -8.96 8.37 5.20 0.04 -8.92 16 10 N -0.61 -9.42 2.97 -166.73 -0.50 -9.92 16 11 C 0.09 1.11 6.33 -3.71 -0.02 1.09 16 12 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 13 C -0.11 -1.10 5.17 -26.69 -0.14 -1.23 16 14 C -0.10 -1.17 2.34 -90.49 -0.21 -1.38 16 15 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 16 C -0.15 -1.61 8.99 37.16 0.33 -1.28 16 17 C 0.15 2.25 2.37 -67.60 -0.16 2.09 16 18 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 19 C 0.16 3.19 4.86 -4.04 -0.02 3.17 16 20 N -0.72 -17.45 3.07 -59.91 -0.18 -17.64 16 21 C -0.20 -5.78 9.69 -15.06 -0.15 -5.93 16 22 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 23 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 24 N -0.94 -30.37 13.97 55.49 0.78 -29.60 16 25 Si 0.88 23.28 27.74 -169.99 -4.71 18.57 16 26 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 27 H -0.29 -7.96 7.11 56.52 0.40 -7.55 16 28 H -0.28 -7.24 6.52 56.52 0.37 -6.87 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.11 2.25 6.65 -51.93 -0.35 1.91 16 34 H 0.25 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.20 3.85 -54.55 -0.21 0.99 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 44 H 0.03 0.58 6.12 -51.93 -0.32 0.26 16 45 H 0.05 1.01 6.37 -51.93 -0.33 0.68 16 46 H 0.36 8.72 5.47 -40.82 -0.22 8.50 16 47 H 0.25 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -34.63 361.46 -7.09 -41.72 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.27 Total: 6.63 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -0.60 Total: 3.58 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.03 Total: -64.59 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -4.71 Total: 18.57 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.63 -7.09 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753809000.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.697 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds