Wall clock time and date at job start Tue Mar 31 2020 13:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.30611 * 125.42505 * 89.69765 * 3 2 1 5 5 C 1.33690 * 108.99801 * 179.87219 * 4 3 2 6 6 C 1.50706 * 126.27376 * 180.15506 * 5 4 3 7 7 C 1.36343 * 107.45140 * 0.38664 * 5 4 3 8 8 C 1.46724 * 126.64145 * 179.79425 * 7 5 4 9 9 O 1.21681 * 120.00265 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99745 * 179.97438 * 8 7 5 11 11 C 1.47023 * 125.64888 * 0.02562 * 10 8 7 12 12 C 1.54324 * 107.27319 * 181.02430 * 11 10 8 13 13 C 1.55154 * 102.94211 * 22.18976 * 12 11 10 14 14 H 1.08999 * 111.00225 * 82.57437 * 13 12 11 15 15 C 1.52996 * 111.00687 * 206.38780 * 13 12 11 16 16 H 1.09010 * 109.47138 * 59.99975 * 15 13 12 17 17 C 1.52995 * 109.47287 * 300.00355 * 15 13 12 18 18 N 1.46495 * 109.47563 * 179.97438 * 15 13 12 19 19 C 1.36935 * 120.00367 * 204.99986 * 18 15 13 20 20 H 1.07993 * 120.00163 * 0.02562 * 19 18 15 21 21 C 1.38812 * 119.99766 * 180.02562 * 19 18 15 22 22 N 1.31621 * 120.00571 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 119.99745 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47162 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46923 * 120.00180 * 23 21 19 26 26 H 1.48498 * 109.46840 * 240.00152 * 23 21 19 27 27 C 1.47426 * 125.65081 * 179.71385 * 10 8 7 28 28 O 1.33666 * 125.42069 * 270.00349 * 3 2 1 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.09003 * 109.46768 * 270.27004 * 6 5 4 35 35 H 1.08994 * 109.46978 * 30.27468 * 6 5 4 36 36 H 1.08997 * 109.46785 * 150.27213 * 6 5 4 37 37 H 1.08999 * 109.88570 * 300.43982 * 11 10 8 38 38 H 1.09004 * 109.88436 * 61.45061 * 11 10 8 39 39 H 1.08998 * 110.72230 * 140.55711 * 12 11 10 40 40 H 1.09008 * 110.71719 * 263.65238 * 12 11 10 41 41 H 1.08997 * 109.47482 * 180.02562 * 17 15 13 42 42 H 1.09000 * 109.47245 * 299.99922 * 17 15 13 43 43 H 1.09003 * 109.47260 * 59.99531 * 17 15 13 44 44 H 0.97008 * 119.99436 * 25.00255 * 18 15 13 45 45 H 0.96992 * 120.00054 * 180.02562 * 22 21 19 46 46 H 1.08995 * 110.36330 * 274.74916 * 27 10 8 47 47 H 1.08997 * 110.36246 * 37.06654 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2793 2.1365 1.0643 5 6 2.7113 3.3439 0.6863 6 6 3.1103 4.4744 1.5995 7 6 2.7196 3.3668 -0.6769 8 6 3.1174 4.4913 -1.5314 9 8 3.4865 5.5364 -1.0291 10 7 3.0741 4.3667 -2.8727 11 6 2.6499 3.1666 -3.6085 12 6 2.7892 3.4786 -5.1134 13 6 3.8195 4.6385 -5.1339 14 1 4.8388 4.2566 -5.0770 15 6 3.6339 5.5152 -6.3739 16 1 2.6298 5.9397 -6.3718 17 6 3.8259 4.6662 -7.6321 18 7 4.6210 6.5975 -6.3591 19 6 4.3666 7.7655 -7.0271 20 1 3.4381 7.8890 -7.5645 21 6 5.3024 8.7907 -7.0135 22 7 6.4343 8.6401 -6.3589 23 14 4.9550 10.3844 -7.9242 24 1 3.6232 10.3020 -8.5759 25 1 4.9672 11.5164 -6.9631 26 1 5.9988 10.6014 -8.9579 27 6 3.4382 5.4132 -3.8451 28 8 2.2904 2.1513 -1.0893 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.2375 5.0891 1.8194 35 1 3.5113 4.0673 2.5277 36 1 3.8708 5.0842 1.1118 37 1 3.2891 2.3242 -3.3439 38 1 1.6121 2.9333 -3.3704 39 1 3.1725 2.6126 -5.6530 40 1 1.8347 3.7997 -5.5306 41 1 3.6941 5.2908 -8.5156 42 1 4.8299 4.2417 -7.6343 43 1 3.0911 3.8612 -7.6429 44 1 5.4550 6.4867 -5.8761 45 1 7.0879 9.3567 -6.3491 46 1 2.5883 6.0697 -4.0317 47 1 4.2902 5.9881 -3.4824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754804214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:43 Heat of formation + Delta-G solvation = -10.815701 kcal Electronic energy + Delta-G solvation = -27451.886508 eV Core-core repulsion = 23636.334484 eV Total energy + Delta-G solvation = -3815.552025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.65197 -39.92876 -37.88953 -35.68735 -35.09264 -34.57432 -32.53661 -31.05813 -30.58625 -28.90915 -28.38375 -27.51744 -25.30518 -24.01373 -23.42857 -21.96865 -21.48383 -21.38016 -19.89210 -19.67975 -17.74283 -17.27072 -16.93875 -16.27394 -16.13446 -15.55026 -15.06809 -14.82532 -14.53017 -14.16826 -13.87588 -13.68006 -13.41071 -13.32419 -13.17251 -12.98043 -12.81654 -12.71636 -12.44805 -12.22830 -12.12124 -12.07628 -11.69287 -11.63869 -11.39141 -11.18224 -11.01168 -10.90141 -10.81044 -10.62539 -10.57088 -10.20739 -10.12616 -9.87420 -9.63804 -9.07541 -8.92186 -8.57096 -6.96846 -5.75990 -3.05215 0.65247 2.15634 2.18600 2.95147 3.02948 3.43998 3.49417 3.51856 3.57252 4.31129 4.47312 4.56707 4.62320 4.63611 4.67529 4.77370 4.90815 4.97201 5.21019 5.27980 5.30017 5.31679 5.43653 5.51709 5.54820 5.55014 5.62714 5.65248 5.72459 5.79365 5.85347 5.86571 5.90252 6.01683 6.13199 6.15225 6.23578 6.28979 6.37192 6.50028 6.60465 6.82884 7.04864 7.30498 7.46726 7.70828 7.98097 8.41917 9.53486 10.09816 10.44230 11.46555 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.002813 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.581454 B = 9952.391249 C =11028.061226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 C 0.214 3.786 4 N -0.487 5.487 5 C 0.078 3.922 6 C -0.081 4.081 7 C -0.108 4.108 8 C 0.617 3.383 9 O -0.511 6.511 10 N -0.608 5.608 11 C 0.103 3.897 12 C -0.123 4.123 13 C -0.101 4.101 14 H 0.083 0.917 15 C 0.185 3.815 16 H 0.049 0.951 17 C -0.164 4.164 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.120 3.880 28 O -0.183 6.183 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.038 0.962 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.075 0.925 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.350 -20.189 11.446 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.067 4.067 3 C 0.008 3.992 4 N -0.217 5.217 5 C -0.046 4.046 6 C -0.138 4.138 7 C -0.163 4.163 8 C 0.404 3.596 9 O -0.389 6.389 10 N -0.340 5.340 11 C -0.020 4.020 12 C -0.161 4.161 13 C -0.121 4.121 14 H 0.101 0.899 15 C 0.075 3.925 16 H 0.067 0.933 17 C -0.224 4.224 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.001 4.001 28 O -0.070 6.070 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.309 -19.694 12.227 25.792 hybrid contribution 0.253 0.967 -1.101 1.487 sum -11.057 -18.727 11.126 24.428 Atomic orbital electron populations 1.21790 0.92727 1.03203 1.03172 1.20168 0.97097 0.83879 1.05551 1.26558 0.97086 0.96659 0.78891 1.70321 1.17738 1.03644 1.29998 1.22058 0.97346 0.93986 0.91258 1.20397 1.02969 0.93052 0.97375 1.22938 1.12234 0.86102 0.95051 1.15910 0.78731 0.84624 0.80326 1.90892 1.48263 1.26740 1.72980 1.48458 1.64625 1.16496 1.04430 1.22110 0.99806 0.87541 0.92582 1.22688 1.00565 0.99427 0.93462 1.22724 0.99133 0.95094 0.95170 0.89870 1.20144 0.94225 0.88105 0.90064 0.93263 1.22443 1.00147 0.99205 1.00624 1.42432 1.19172 1.12852 1.62123 1.19236 1.01571 0.91636 1.24457 0.91168 1.24735 0.96665 0.98526 1.00931 1.69664 1.08616 1.33149 1.46491 0.86158 0.77251 0.83987 0.79026 1.20600 1.21870 1.21949 1.22421 1.01563 0.89431 0.86661 1.84519 1.63467 1.22079 1.36953 0.90628 0.91662 0.91966 0.87346 0.88501 0.90018 0.90523 0.88481 0.91441 0.91503 0.89892 0.90226 0.92725 0.93495 0.94350 0.78258 0.93550 0.90632 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.03 -0.17 6.56 -27.88 -0.18 -0.35 16 3 C 0.21 2.27 7.57 -12.80 -0.10 2.17 16 4 N -0.49 -6.20 11.26 -7.07 -0.08 -6.28 16 5 C 0.08 1.07 7.16 -82.46 -0.59 0.48 16 6 C -0.08 -0.96 9.87 36.01 0.36 -0.61 16 7 C -0.11 -1.55 6.98 -36.84 -0.26 -1.81 16 8 C 0.62 10.09 7.82 -12.83 -0.10 9.99 16 9 O -0.51 -9.69 15.05 5.21 0.08 -9.61 16 10 N -0.61 -9.19 3.32 -171.90 -0.57 -9.76 16 11 C 0.10 1.20 5.56 -3.06 -0.02 1.19 16 12 C -0.12 -1.41 5.28 -24.90 -0.13 -1.54 16 13 C -0.10 -1.55 2.67 -88.36 -0.24 -1.78 16 14 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.18 3.40 2.43 -67.94 -0.17 3.23 16 16 H 0.05 0.93 8.01 -51.92 -0.42 0.51 16 17 C -0.16 -2.73 9.27 37.16 0.34 -2.38 16 18 N -0.72 -17.38 4.97 -53.43 -0.27 -17.64 16 19 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 23 Si 0.90 22.36 29.55 -169.99 -5.02 17.33 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C 0.12 2.02 6.24 -2.41 -0.02 2.01 16 28 O -0.18 -2.23 8.50 4.42 0.04 -2.19 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.28 6.47 -51.93 -0.34 0.95 16 37 H 0.07 0.74 7.70 -51.93 -0.40 0.34 16 38 H 0.07 0.72 7.81 -51.93 -0.41 0.31 16 39 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 40 H 0.08 0.86 8.04 -51.92 -0.42 0.45 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.04 0.51 7.28 -51.93 -0.38 0.13 16 44 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.08 1.32 7.99 -51.93 -0.41 0.91 16 47 H 0.09 1.74 8.03 -51.93 -0.42 1.32 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -32.70 384.57 -7.97 -40.67 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.70 Total: 5.82 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.97 Total: 3.16 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.19 Total: -60.98 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.12 Total: -11.80 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.70 -7.97 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754804214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.855 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds