Wall clock time and date at job start Tue Mar 31 2020 12:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30615 * 125.41886 * 2 1 4 4 C 1.33698 * 108.99075 * 179.75004 * 3 2 1 5 5 C 1.50708 * 126.27143 * 180.27298 * 4 3 2 6 6 C 1.36335 * 107.45383 * 0.42858 * 4 3 2 7 7 C 1.46722 * 126.64684 * 179.84182 * 6 4 3 8 8 O 1.21693 * 119.99695 * 359.71210 * 7 6 4 9 9 N 1.34771 * 120.00597 * 179.44042 * 7 6 4 10 10 C 1.46499 * 120.00560 * 180.27619 * 9 7 6 11 11 H 1.09002 * 109.46669 * 34.99296 * 10 9 7 12 12 C 1.52994 * 109.47171 * 154.99765 * 10 9 7 13 13 C 1.53000 * 109.46893 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47289 * 299.99648 * 13 12 10 15 15 H 1.09001 * 109.46981 * 300.00322 * 14 13 12 16 16 C 1.53000 * 109.47662 * 180.02562 * 14 13 12 17 17 N 1.46500 * 109.47164 * 175.00243 * 16 14 13 18 18 C 1.36933 * 119.99584 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00594 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99765 * 179.97438 * 18 17 16 21 21 N 1.31613 * 120.00197 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99983 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47082 * 60.00014 * 22 20 18 24 24 H 1.48498 * 109.47370 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47231 * 299.99989 * 22 20 18 26 26 C 1.53005 * 109.46988 * 60.00010 * 14 13 12 27 27 C 1.52997 * 109.46898 * 274.99729 * 10 9 7 28 28 O 1.33660 * 125.42314 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47127 * 269.97843 * 1 2 3 30 30 H 1.08999 * 109.47235 * 29.97584 * 1 2 3 31 31 H 1.08999 * 109.46739 * 149.97558 * 1 2 3 32 32 H 1.09000 * 109.46915 * 270.18294 * 5 4 3 33 33 H 1.09002 * 109.46830 * 30.18570 * 5 4 3 34 34 H 1.08999 * 109.46588 * 150.18533 * 5 4 3 35 35 H 0.97000 * 119.99371 * 0.26889 * 9 7 6 36 36 H 1.08998 * 109.47170 * 299.99586 * 12 10 9 37 37 H 1.09002 * 109.47707 * 60.00167 * 12 10 9 38 38 H 1.09001 * 109.47372 * 59.99731 * 13 12 10 39 39 H 1.09003 * 109.47505 * 180.02562 * 13 12 10 40 40 H 1.08997 * 109.47090 * 295.00317 * 16 14 13 41 41 H 1.08998 * 109.46796 * 54.99807 * 16 14 13 42 42 H 0.96996 * 120.00095 * 359.97438 * 17 16 14 43 43 H 0.97006 * 120.00474 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.47005 * 60.00327 * 26 14 13 45 45 H 1.08998 * 109.47292 * 180.02562 * 26 14 13 46 46 H 1.09007 * 109.47400 * 299.99978 * 27 10 9 47 47 H 1.09000 * 109.47470 * 59.99633 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6863 0.0055 5 6 4.7452 1.5996 0.0133 6 6 3.5708 -0.6768 -0.0007 7 6 4.7635 -1.5313 -0.0011 8 8 5.8719 -1.0289 -0.0009 9 7 4.6317 -2.8726 0.0037 10 6 5.8226 -3.7257 0.0094 11 1 6.6070 -3.2506 0.5985 12 6 5.4746 -5.0831 0.6235 13 6 6.7185 -5.9739 0.6300 14 6 7.2098 -6.1743 -0.8051 15 1 6.4256 -6.6495 -1.3945 16 6 8.4533 -7.0656 -0.7988 17 7 8.8535 -7.3553 -2.1780 18 6 9.9481 -8.1410 -2.4225 19 1 10.5166 -8.5467 -1.5987 20 6 10.3270 -8.4159 -3.7293 21 7 9.6340 -7.9219 -4.7333 22 14 11.8206 -9.4871 -4.0630 23 1 11.6126 -10.8282 -3.4601 24 1 12.0118 -9.6272 -5.5290 25 1 13.0251 -8.8570 -3.4653 26 6 7.5577 -4.8169 -1.4193 27 6 6.3132 -3.9261 -1.4259 28 8 2.2817 -1.0892 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 5.0372 1.8245 -1.0125 33 1 4.4933 2.5254 0.5307 34 1 5.5720 1.1094 0.5273 35 1 3.7482 -3.2730 0.0036 36 1 5.1251 -4.9404 1.6460 37 1 4.6902 -5.5582 0.0344 38 1 7.5027 -5.4987 1.2194 39 1 6.4706 -6.9412 1.0671 40 1 9.2659 -6.5520 -0.2850 41 1 8.2289 -7.9986 -0.2819 42 1 8.3428 -6.9912 -2.9178 43 1 9.8985 -8.1143 -5.6465 44 1 8.3419 -4.3417 -0.8299 45 1 7.9073 -4.9596 -2.4418 46 1 5.5287 -4.4011 -2.0151 47 1 6.5611 -2.9590 -1.8635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754950284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:30 Heat of formation + Delta-G solvation = -53.965061 kcal Electronic energy + Delta-G solvation = -26733.112668 eV Core-core repulsion = 22915.689547 eV Total energy + Delta-G solvation = -3817.423121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.55997 -41.12907 -39.47590 -36.90371 -36.40197 -35.16575 -33.84624 -33.09404 -31.74965 -30.77767 -30.31215 -28.48418 -26.65893 -24.68147 -23.82246 -23.15547 -22.88234 -21.91041 -21.65770 -20.87398 -19.32353 -19.06181 -18.18365 -17.49179 -16.87136 -16.67074 -16.25264 -15.91621 -15.53451 -15.32487 -15.29192 -15.25845 -14.87575 -14.60145 -14.34377 -14.11331 -13.87910 -13.79876 -13.51589 -13.49875 -13.27594 -13.15022 -13.10022 -12.87508 -12.74619 -12.21694 -12.11028 -12.08135 -12.07242 -11.99852 -11.90320 -11.54325 -11.35863 -11.20431 -11.06431 -10.88544 -10.30820 -9.84722 -8.97675 -7.94641 -5.22807 -0.34177 1.24187 1.26479 1.46236 1.49726 1.55767 1.89429 2.02320 2.56363 2.86242 3.38436 3.55927 3.58311 3.70530 3.73643 3.92062 4.06040 4.13841 4.25182 4.29714 4.42202 4.42825 4.52509 4.55297 4.57265 4.59402 4.61345 4.64117 4.72753 4.80060 4.85317 4.93489 5.03114 5.07666 5.10163 5.11257 5.20027 5.22814 5.26881 5.30203 5.38122 5.46827 5.53720 5.61359 6.22424 6.28015 6.50500 6.91249 7.33971 8.12236 8.34929 9.28867 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.025827 B = 0.002104 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.874967 B =13305.987823 C =13530.286758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.232 3.768 3 N -0.519 5.519 4 C 0.074 3.926 5 C -0.080 4.080 6 C -0.141 4.141 7 C 0.608 3.392 8 O -0.543 6.543 9 N -0.700 5.700 10 C 0.152 3.848 11 H 0.080 0.920 12 C -0.112 4.112 13 C -0.100 4.100 14 C -0.084 4.084 15 H 0.066 0.934 16 C 0.153 3.847 17 N -0.745 5.745 18 C -0.246 4.246 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.279 1.279 26 C -0.100 4.100 27 C -0.118 4.118 28 O -0.189 6.189 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.415 0.585 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.016 0.984 41 H 0.022 0.978 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.055 0.945 45 H 0.041 0.959 46 H 0.069 0.931 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.334 15.785 14.469 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.027 3.973 3 N -0.249 5.249 4 C -0.050 4.050 5 C -0.137 4.137 6 C -0.196 4.196 7 C 0.394 3.606 8 O -0.423 6.423 9 N -0.350 5.350 10 C 0.048 3.952 11 H 0.098 0.902 12 C -0.150 4.150 13 C -0.139 4.139 14 C -0.103 4.103 15 H 0.084 0.916 16 C 0.027 3.973 17 N -0.388 5.388 18 C -0.378 4.378 19 H 0.092 0.908 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.803 3.197 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.205 1.205 26 C -0.138 4.138 27 C -0.157 4.157 28 O -0.077 6.077 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.252 0.748 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.034 0.966 41 H 0.040 0.960 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.665 16.552 14.537 30.898 hybrid contribution 0.863 -1.226 -1.053 1.832 sum -20.802 15.326 13.484 29.145 Atomic orbital electron populations 1.20767 0.76933 1.07237 1.06971 1.27724 0.98294 0.77773 0.93490 1.70409 1.01570 1.31044 1.21902 1.22409 0.94228 0.91737 0.96660 1.20409 0.91495 0.97683 1.04095 1.22702 0.82816 0.95094 1.18968 1.16421 0.85290 0.82246 0.76612 1.90865 1.24892 1.74441 1.52063 1.45883 1.11261 1.04548 1.73303 1.21052 0.86785 0.91112 0.96253 0.90221 1.21729 0.98622 0.92465 1.02193 1.21424 0.97307 1.00542 0.94613 1.21254 0.96587 0.94658 0.97807 0.91599 1.20887 0.94715 0.95955 0.85747 1.42607 1.32850 1.60209 1.03112 1.19629 1.04124 1.22001 0.92023 0.90755 1.25588 1.02671 1.03277 0.95524 1.69811 1.43058 1.51129 0.98146 0.85196 0.79389 0.78869 0.76224 1.20230 1.22146 1.20513 1.21370 0.97037 0.95058 1.00374 1.21830 0.97841 0.99089 0.96942 1.84431 1.15574 1.37697 1.69966 0.86153 0.86538 0.86730 0.89573 0.89098 0.89590 0.74771 0.89083 0.89983 0.91358 0.89885 0.96635 0.95997 0.79403 0.94044 0.92573 0.93996 0.91249 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 71.24 0.75 0.51 16 2 C 0.23 3.61 8.32 88.29 0.73 4.34 16 3 N -0.52 -10.93 11.26 -291.06 -3.28 -14.21 16 4 C 0.07 1.70 7.16 41.83 0.30 1.99 16 5 C -0.08 -1.60 9.87 71.24 0.70 -0.90 16 6 C -0.14 -3.21 7.18 24.04 0.17 -3.03 16 7 C 0.61 15.01 7.75 86.46 0.67 15.68 16 8 O -0.54 -16.59 14.46 -4.33 -0.06 -16.65 16 9 N -0.70 -13.81 5.07 -446.48 -2.26 -16.07 16 10 C 0.15 3.31 2.45 44.99 0.11 3.42 16 11 H 0.08 2.00 7.58 -2.39 -0.02 1.98 16 12 C -0.11 -1.93 5.39 30.59 0.16 -1.77 16 13 C -0.10 -2.20 5.20 30.59 0.16 -2.04 16 14 C -0.08 -2.60 2.22 -10.79 -0.02 -2.62 16 15 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 16 C 0.15 6.15 5.65 86.38 0.49 6.64 16 17 N -0.74 -38.75 5.33 -343.46 -1.83 -40.58 16 18 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 19 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 21 N -0.97 -60.65 13.06 21.65 0.28 -60.36 16 22 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 26 C -0.10 -3.25 5.08 30.61 0.16 -3.09 16 27 C -0.12 -3.19 5.50 30.61 0.17 -3.02 16 28 O -0.19 -3.44 10.57 -7.07 -0.07 -3.52 16 29 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.91 6.47 -2.39 -0.02 1.89 16 35 H 0.42 6.05 8.40 -92.71 -0.78 5.27 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.37 20.64 6.85 -92.71 -0.64 20.01 16 43 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.04 1.65 7.18 -2.39 -0.02 1.63 16 46 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 47 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -75.05 383.15 0.23 -74.82 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.43 Total: 28.81 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 5.86 Total: -1.28 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -7.09 Total: -131.22 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.14 Total: -20.17 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -75.05 0.23 -74.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754950284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.859 kcal (2) G-P(sol) polarization free energy of solvation -75.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds