Wall clock time and date at job start Tue Mar 31 2020 12:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46773 * 2 1 4 4 C 1.38022 * 119.51208 * 125.00084 * 3 2 1 5 5 C 1.39930 * 119.12965 * 179.97438 * 4 3 2 6 6 C 1.48162 * 120.88893 * 180.02562 * 5 4 3 7 7 O 1.21517 * 120.00191 * 321.67614 * 6 5 4 8 8 N 1.34776 * 120.00313 * 141.68056 * 6 5 4 9 9 C 1.46500 * 119.99423 * 4.68125 * 8 6 5 10 10 C 1.46494 * 120.00581 * 184.67911 * 8 6 5 11 11 C 1.52996 * 109.47145 * 89.99684 * 10 8 6 12 12 C 1.53001 * 109.47263 * 180.02562 * 11 10 8 13 13 N 1.46501 * 109.47150 * 179.97438 * 12 11 10 14 14 C 1.46499 * 119.99610 * 90.00713 * 13 12 11 15 15 C 1.36936 * 120.00205 * 269.99649 * 13 12 11 16 16 H 1.08002 * 119.99856 * 144.63625 * 15 13 12 17 17 C 1.38808 * 120.00154 * 324.64773 * 15 13 12 18 18 N 1.31622 * 119.99931 * 156.86341 * 17 15 13 19 19 Si 1.86801 * 120.00081 * 336.86290 * 17 15 13 20 20 H 1.48499 * 109.47323 * 95.36640 * 19 17 15 21 21 H 1.48504 * 109.47122 * 215.36738 * 19 17 15 22 22 H 1.48498 * 109.47092 * 335.36510 * 19 17 15 23 23 C 1.39605 * 118.21773 * 0.02562 * 5 4 3 24 24 C 1.38858 * 118.94902 * 0.24757 * 23 5 4 25 25 O 1.35685 * 119.61822 * 179.74526 * 24 23 5 26 26 N 1.31882 * 119.51281 * 305.01566 * 3 2 1 27 27 H 1.09000 * 109.46756 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47246 * 299.99610 * 1 2 3 29 29 H 1.08995 * 109.47550 * 60.00287 * 1 2 3 30 30 H 1.08997 * 109.47619 * 239.99724 * 2 1 3 31 31 H 1.09003 * 109.46945 * 119.99698 * 2 1 3 32 32 H 1.07997 * 120.43461 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.47698 * 85.53640 * 9 8 6 34 34 H 1.09005 * 109.46691 * 205.53866 * 9 8 6 35 35 H 1.09005 * 109.47145 * 325.53054 * 9 8 6 36 36 H 1.09000 * 109.47397 * 210.00240 * 10 8 6 37 37 H 1.09004 * 109.46800 * 329.99916 * 10 8 6 38 38 H 1.09002 * 109.47377 * 299.99992 * 11 10 8 39 39 H 1.09004 * 109.47082 * 60.00405 * 11 10 8 40 40 H 1.09000 * 109.47227 * 300.00525 * 12 11 10 41 41 H 1.09004 * 109.46852 * 60.00128 * 12 11 10 42 42 H 1.08991 * 109.47469 * 85.12086 * 14 13 12 43 43 H 1.09002 * 109.46912 * 205.12188 * 14 13 12 44 44 H 1.09002 * 109.47140 * 325.11251 * 14 13 12 45 45 H 0.97004 * 119.99553 * 179.97438 * 18 17 15 46 46 H 1.08002 * 120.52900 * 179.97438 * 23 5 4 47 47 H 0.96703 * 113.99794 * 90.00508 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9084 1.8323 0.9839 5 6 3.3701 3.1532 0.9759 6 6 4.3117 3.6361 2.0129 7 8 4.1905 3.2653 3.1638 8 7 5.3027 4.4866 1.6799 9 6 5.3876 5.0141 0.3158 10 6 6.2949 4.8838 2.6819 11 6 7.4709 3.9056 2.6508 12 6 8.5068 4.3200 3.6977 13 7 9.6326 3.3829 3.6684 14 6 10.7771 3.6404 2.7909 15 6 9.6151 2.2666 4.4613 16 1 10.0489 1.3441 4.1046 17 6 9.0396 2.3206 5.7233 18 7 8.6072 1.2178 6.2971 19 14 8.8787 3.9583 6.6072 20 1 7.5265 4.5217 6.3635 21 1 9.0750 3.7553 8.0652 22 1 9.9068 4.8999 6.0958 23 6 2.9197 4.0038 -0.0353 24 6 2.0335 3.5103 -0.9836 25 8 1.5830 4.3266 -1.9693 26 7 1.6279 2.2529 -0.9400 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2334 1.1437 1.7499 33 1 4.7536 5.8962 0.2271 34 1 6.4201 5.2850 0.0947 35 1 5.0527 4.2534 -0.3894 36 1 6.6527 5.8893 2.4603 37 1 5.8374 4.8707 3.6712 38 1 7.1131 2.9001 2.8725 39 1 7.9283 3.9187 1.6615 40 1 8.8647 5.3256 3.4766 41 1 8.0491 4.3066 4.6869 42 1 11.4799 4.3032 3.2955 43 1 11.2721 2.6986 2.5538 44 1 10.4308 4.1106 1.8705 45 1 8.2054 1.2555 7.1792 46 1 3.2518 5.0306 -0.0769 47 1 2.1323 4.3223 -2.7652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755038512.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:21 Heat of formation + Delta-G solvation = -5.233628 kcal Electronic energy + Delta-G solvation = -27271.508274 eV Core-core repulsion = 23456.198306 eV Total energy + Delta-G solvation = -3815.309968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19277 -39.57900 -37.60618 -36.52915 -35.58211 -34.28642 -32.68798 -31.81372 -31.00307 -29.71009 -27.30638 -26.61410 -25.85814 -24.73772 -23.75769 -22.55338 -21.62222 -20.65498 -19.75857 -18.67804 -17.41912 -16.85766 -16.71039 -16.38118 -16.04853 -15.51920 -15.45787 -15.19565 -14.78632 -14.32266 -14.19091 -13.63255 -13.54406 -13.46063 -13.35466 -13.18139 -12.83129 -12.55797 -12.27595 -12.17114 -12.10963 -12.01167 -11.87997 -11.67891 -11.38097 -11.29685 -11.11986 -10.83282 -10.47414 -10.43168 -10.29642 -10.06571 -9.74241 -9.55683 -9.45632 -9.11481 -8.70943 -8.46842 -6.83430 -5.95753 -3.34838 0.51969 0.65203 2.56786 2.80858 3.23523 3.34694 3.39456 3.49056 3.53751 4.06919 4.19671 4.56060 4.60437 4.66245 4.83149 4.87218 4.94449 5.01078 5.04373 5.14118 5.19582 5.28737 5.40362 5.41680 5.45449 5.49599 5.65638 5.71710 5.74909 5.84648 5.85631 5.97490 6.01294 6.07705 6.15309 6.25379 6.32154 6.46577 6.62706 6.68725 6.77873 7.03302 7.10498 7.25255 7.57482 8.04070 8.07839 8.38962 9.00700 9.74859 10.13867 11.20069 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.003096 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.567793 B = 9042.657253 C = 9863.304356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C 0.155 3.845 4 C -0.127 4.127 5 C -0.057 4.057 6 C 0.553 3.447 7 O -0.510 6.510 8 N -0.605 5.605 9 C 0.072 3.928 10 C 0.113 3.887 11 C -0.147 4.147 12 C 0.141 3.859 13 N -0.612 5.612 14 C 0.126 3.874 15 C -0.273 4.273 16 H 0.078 0.922 17 C 0.036 3.964 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.283 1.283 21 H -0.301 1.301 22 H -0.271 1.271 23 C -0.171 4.171 24 C 0.309 3.691 25 O -0.479 6.479 26 N -0.489 5.489 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.038 0.962 41 H 0.054 0.946 42 H 0.006 0.994 43 H 0.044 0.956 44 H 0.025 0.975 45 H 0.263 0.737 46 H 0.153 0.847 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.739 6.052 -18.474 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C 0.017 3.983 4 C -0.148 4.148 5 C -0.068 4.068 6 C 0.339 3.661 7 O -0.385 6.385 8 N -0.338 5.338 9 C -0.071 4.071 10 C -0.009 4.009 11 C -0.188 4.188 12 C 0.015 3.985 13 N -0.336 5.336 14 C -0.019 4.019 15 C -0.401 4.401 16 H 0.096 0.904 17 C -0.165 4.165 18 N -0.538 5.538 19 Si 0.708 3.292 20 H -0.211 1.211 21 H -0.229 1.229 22 H -0.196 1.196 23 C -0.192 4.192 24 C 0.130 3.870 25 O -0.286 6.286 26 N -0.209 5.209 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.169 0.831 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.073 0.927 46 H 0.170 0.830 47 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -13.821 5.676 -17.961 23.363 hybrid contribution 0.799 1.231 0.712 1.631 sum -13.023 6.908 -17.249 22.690 Atomic orbital electron populations 1.21680 0.93867 1.01938 1.02716 1.20564 0.97229 0.89616 1.03847 1.20989 0.92376 0.95795 0.89148 1.22163 0.97469 0.95588 0.99545 1.20290 0.97220 0.94627 0.94684 1.18199 0.80766 0.79294 0.87791 1.90877 1.71895 1.56280 1.19452 1.47791 1.27960 1.45876 1.12186 1.22142 1.03239 0.98792 0.82976 1.21709 0.88761 0.98158 0.92311 1.22491 0.95325 1.00468 1.00480 1.21067 0.88365 0.91914 0.97172 1.44040 1.14845 1.26433 1.48321 1.21047 0.89791 0.98673 0.92381 1.18779 1.38446 0.88249 0.94657 0.90410 1.25400 0.98227 0.96306 0.96538 1.69877 1.39934 1.27491 1.16528 0.86930 0.77744 0.86024 0.78494 1.21120 1.22946 1.19630 1.22607 0.98367 1.02283 0.95959 1.18940 0.90923 0.86593 0.90513 1.84817 1.55060 1.61315 1.27422 1.66751 1.24348 1.03687 1.26102 0.92063 0.92766 0.91626 0.89543 0.89544 0.83148 0.92252 0.90341 0.90939 0.90604 0.89590 0.90768 0.92799 0.94361 0.92783 0.97601 0.93687 0.95648 0.92686 0.82973 0.74244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.77 37.16 0.36 -0.83 16 2 C -0.07 -0.65 6.33 -27.88 -0.18 -0.82 16 3 C 0.15 1.73 6.17 -82.65 -0.51 1.22 16 4 C -0.13 -1.58 9.34 -39.03 -0.36 -1.95 16 5 C -0.06 -0.74 5.27 -104.68 -0.55 -1.29 16 6 C 0.55 8.79 7.41 -12.18 -0.09 8.70 16 7 O -0.51 -10.46 16.49 5.35 0.09 -10.37 16 8 N -0.61 -8.27 2.87 -182.57 -0.52 -8.79 16 9 C 0.07 0.63 8.88 59.85 0.53 1.16 16 10 C 0.11 1.75 5.42 -4.05 -0.02 1.73 16 11 C -0.15 -2.75 5.86 -26.73 -0.16 -2.91 16 12 C 0.14 3.05 4.54 -4.04 -0.02 3.03 16 13 N -0.61 -14.88 2.52 -181.12 -0.46 -15.34 16 14 C 0.13 2.53 10.70 59.85 0.64 3.17 16 15 C -0.27 -7.83 9.91 -15.06 -0.15 -7.98 16 16 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 17 C 0.04 1.07 5.30 -17.43 -0.09 0.97 16 18 N -0.90 -28.13 13.97 55.49 0.78 -27.35 16 19 Si 0.88 22.81 25.00 -169.99 -4.25 18.56 16 20 H -0.28 -7.16 6.65 56.52 0.38 -6.79 16 21 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 22 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.17 -1.76 7.60 -38.84 -0.30 -2.05 16 24 C 0.31 3.27 7.74 -17.17 -0.13 3.13 16 25 O -0.48 -4.06 13.56 -18.76 -0.25 -4.31 16 26 N -0.49 -5.71 9.87 -9.60 -0.09 -5.80 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.60 7.94 -51.93 -0.41 0.18 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.66 7.86 -51.93 -0.41 0.25 16 32 H 0.15 1.88 7.94 -52.49 -0.42 1.46 16 33 H 0.06 0.39 6.93 -51.93 -0.36 0.03 16 34 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 35 H 0.07 0.58 5.80 -51.93 -0.30 0.28 16 36 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 37 H 0.09 1.55 7.36 -51.93 -0.38 1.17 16 38 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 41 H 0.05 1.31 3.03 -51.93 -0.16 1.15 16 42 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.04 0.89 8.00 -51.93 -0.42 0.47 16 44 H 0.02 0.43 8.11 -51.93 -0.42 0.01 16 45 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 46 H 0.15 1.23 5.34 -52.49 -0.28 0.95 16 47 H 0.40 1.29 9.06 45.56 0.41 1.70 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -36.76 382.18 -6.50 -43.26 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.52 Total: -0.89 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -1.03 Total: 5.27 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.30 Total: -57.29 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.17 Total: -14.68 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.25 Total: 18.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.76 -6.50 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755038512.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.028 kcal (2) G-P(sol) polarization free energy of solvation -36.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds