Wall clock time and date at job start Tue Mar 31 2020 13:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47122 * 2 1 4 4 N 1.30010 * 127.33063 * 275.22009 * 3 2 1 5 5 O 1.20659 * 112.29947 * 180.02562 * 4 3 2 6 6 C 1.33492 * 113.15590 * 359.74521 * 5 4 3 7 7 C 1.50707 * 126.82909 * 180.30393 * 6 5 4 8 8 C 1.37351 * 106.34104 * 0.39773 * 6 5 4 9 9 C 1.47400 * 128.56531 * 179.90618 * 8 6 5 10 10 O 1.21614 * 120.00203 * 265.99561 * 9 8 6 11 11 N 1.34778 * 119.99898 * 85.99381 * 9 8 6 12 12 C 1.46499 * 120.00001 * 5.44267 * 11 9 8 13 13 C 1.46497 * 119.99912 * 185.43636 * 11 9 8 14 14 H 1.08992 * 109.47604 * 5.09640 * 13 11 9 15 15 C 1.53002 * 109.47010 * 245.09501 * 13 11 9 16 16 N 1.46506 * 109.46878 * 169.76682 * 15 13 11 17 17 C 1.36934 * 119.99855 * 173.78598 * 16 15 13 18 18 H 1.08002 * 120.00048 * 354.17032 * 17 16 15 19 19 C 1.38813 * 119.99918 * 174.17601 * 17 16 15 20 20 N 1.31621 * 120.00057 * 184.19948 * 19 17 16 21 21 Si 1.86805 * 120.00083 * 4.19435 * 19 17 16 22 22 H 1.48507 * 109.46785 * 84.57595 * 21 19 17 23 23 H 1.48497 * 109.46880 * 204.57494 * 21 19 17 24 24 H 1.48497 * 109.47213 * 324.57730 * 21 19 17 25 25 C 1.53001 * 109.46841 * 125.09794 * 13 11 9 26 26 C 1.53006 * 117.49789 * 254.82029 * 25 13 11 27 27 C 1.53002 * 117.49964 * 186.16095 * 25 13 11 28 28 H 1.09003 * 109.47227 * 300.00033 * 1 2 3 29 29 H 1.08997 * 109.46886 * 60.00366 * 1 2 3 30 30 H 1.08996 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47012 * 239.99971 * 2 1 3 32 32 H 1.08997 * 109.46886 * 119.99634 * 2 1 3 33 33 H 1.09001 * 109.46886 * 270.10924 * 7 6 5 34 34 H 1.09003 * 109.47022 * 30.11004 * 7 6 5 35 35 H 1.09000 * 109.47281 * 150.11155 * 7 6 5 36 36 H 1.09004 * 109.47057 * 269.99688 * 12 11 9 37 37 H 1.09003 * 109.46905 * 29.99292 * 12 11 9 38 38 H 1.08993 * 109.47364 * 149.99643 * 12 11 9 39 39 H 1.08989 * 109.47225 * 49.77067 * 15 13 11 40 40 H 1.08998 * 109.47336 * 289.76137 * 15 13 11 41 41 H 0.96999 * 119.99717 * 353.51553 * 16 15 13 42 42 H 0.96997 * 120.00313 * 179.97438 * 20 19 17 43 43 H 1.08997 * 115.55341 * 40.49082 * 25 13 11 44 44 H 1.09002 * 117.49572 * 359.97438 * 26 25 13 45 45 H 1.08999 * 117.49630 * 145.02382 * 26 25 13 46 46 H 1.08994 * 117.50294 * 214.97818 * 27 25 13 47 47 H 1.09004 * 117.49733 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2065 2.1955 -1.0295 5 8 2.6222 3.2845 -0.7179 6 6 2.7937 3.4240 0.5986 7 6 3.2896 4.6507 1.3200 8 6 2.4305 2.2264 1.1646 9 6 2.4329 1.8447 2.5884 10 8 3.3971 1.2762 3.0639 11 7 1.3665 2.1257 3.3632 12 6 0.1590 2.7018 2.7665 13 6 1.4150 1.8550 4.8021 14 1 2.4143 1.5161 5.0747 15 6 0.3953 0.7690 5.1513 16 7 0.6083 0.3247 6.5310 17 6 -0.2677 -0.5541 7.1102 18 1 -1.1652 -0.8468 6.5855 19 6 -0.0022 -1.0687 8.3718 20 7 -0.8005 -1.9757 8.8940 21 14 1.4881 -0.4742 9.3284 22 1 1.1436 0.7736 10.0561 23 1 1.8998 -1.5174 10.3018 24 1 2.6055 -0.2063 8.3877 25 6 1.0821 3.1339 5.5731 26 6 2.2383 3.8697 6.2535 27 6 1.2207 3.0968 7.0964 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.3757 4.6097 1.4021 34 1 3.0006 5.5417 0.7626 35 1 2.8510 4.6879 2.3172 36 1 0.2285 3.7895 2.7838 37 1 0.0646 2.3602 1.7357 38 1 -0.7146 2.3845 3.3358 39 1 0.5185 -0.0763 4.4744 40 1 -0.6128 1.1712 5.0507 41 1 1.3720 0.6500 7.0328 42 1 -0.6148 -2.3356 9.7753 43 1 0.2770 3.7385 5.1557 44 1 3.2359 3.4424 6.1522 45 1 2.1935 4.9584 6.2840 46 1 0.5071 3.6772 7.6810 47 1 1.5486 2.1611 7.5493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755571941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:55 Heat of formation + Delta-G solvation = 50.174814 kcal Electronic energy + Delta-G solvation = -28452.028132 eV Core-core repulsion = 24639.120855 eV Total energy + Delta-G solvation = -3812.907277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.97125 -41.28404 -39.07537 -36.50902 -36.28948 -36.13586 -34.63883 -33.49379 -32.38827 -30.49221 -28.92779 -27.90499 -26.52594 -25.53029 -24.54898 -23.57283 -23.18396 -21.79437 -21.12047 -20.49679 -19.41947 -18.98030 -18.63591 -17.94096 -17.29044 -16.64128 -16.45694 -16.08661 -15.80672 -15.53581 -15.34688 -15.21765 -14.87562 -14.58239 -14.55125 -14.20474 -14.12491 -13.86490 -13.70671 -13.49752 -13.40112 -13.22171 -13.00669 -12.89336 -12.57041 -12.50755 -12.38311 -12.28982 -12.16658 -11.90625 -11.76340 -11.55400 -11.16559 -10.99492 -10.98009 -10.94106 -10.41143 -9.81076 -9.32005 -8.05111 -5.38345 0.26526 0.78890 1.18992 1.33897 1.36547 1.42468 1.62797 2.05515 2.44767 2.85544 2.95395 3.20045 3.25475 3.45285 3.64408 3.71735 3.85925 3.94602 4.06110 4.07245 4.14149 4.18195 4.21744 4.28362 4.33882 4.36106 4.48071 4.58057 4.60996 4.69802 4.79240 4.80690 4.81982 4.87029 4.90005 4.98724 5.02742 5.06442 5.09124 5.20020 5.24414 5.26249 5.41264 5.74435 6.17885 6.18245 6.89691 7.04356 7.16037 7.78525 7.97756 9.16154 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.016558 B = 0.003829 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.653597 B = 7310.372374 C = 8272.133218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C 0.055 3.945 4 N -0.369 5.369 5 O 0.098 5.902 6 C 0.038 3.962 7 C -0.080 4.080 8 C -0.267 4.267 9 C 0.603 3.397 10 O -0.571 6.571 11 N -0.582 5.582 12 C 0.070 3.930 13 C 0.171 3.829 14 H 0.074 0.926 15 C 0.156 3.844 16 N -0.749 5.749 17 C -0.231 4.231 18 H 0.060 0.940 19 C -0.054 4.054 20 N -0.979 5.979 21 Si 0.938 3.062 22 H -0.263 1.263 23 H -0.295 1.295 24 H -0.265 1.265 25 C -0.154 4.154 26 C -0.161 4.161 27 C -0.181 4.181 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.008 0.992 40 H 0.047 0.953 41 H 0.366 0.634 42 H 0.258 0.742 43 H 0.133 0.867 44 H 0.083 0.917 45 H 0.124 0.876 46 H 0.107 0.893 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 18.931 -18.418 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C -0.108 4.108 4 N -0.075 5.075 5 O 0.037 5.963 6 C -0.026 4.026 7 C -0.137 4.137 8 C -0.275 4.275 9 C 0.390 3.610 10 O -0.450 6.450 11 N -0.313 5.313 12 C -0.071 4.071 13 C 0.067 3.933 14 H 0.092 0.908 15 C 0.029 3.971 16 N -0.397 5.397 17 C -0.362 4.362 18 H 0.078 0.922 19 C -0.246 4.246 20 N -0.629 5.629 21 Si 0.765 3.235 22 H -0.188 1.188 23 H -0.222 1.222 24 H -0.190 1.190 25 C -0.173 4.173 26 C -0.197 4.197 27 C -0.219 4.219 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.026 0.974 40 H 0.065 0.935 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.151 0.849 44 H 0.102 0.898 45 H 0.142 0.858 46 H 0.126 0.874 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.489 18.386 -19.495 27.354 hybrid contribution 0.706 -0.846 1.746 2.065 sum 6.196 17.540 -17.749 25.711 Atomic orbital electron populations 1.21728 0.92175 1.03618 1.02451 1.20081 0.97863 0.86958 1.04118 1.24947 1.00135 0.99140 0.86539 1.73586 1.17370 0.93138 1.23426 1.84515 1.61545 1.26929 1.23318 1.25162 0.96676 0.97461 0.83271 1.20722 1.03076 0.90475 0.99393 1.21674 1.15112 0.96463 0.94245 1.17155 0.82067 0.77594 0.84139 1.90814 1.36356 1.42846 1.75010 1.47639 1.14979 1.61699 1.06973 1.22085 0.85989 1.00026 0.99017 1.20594 0.99504 0.94075 0.79171 0.90810 1.20928 0.97445 0.93817 0.84895 1.42734 1.30332 1.54834 1.11829 1.18979 1.01137 1.16783 0.99298 0.92170 1.25364 1.01310 0.98892 0.99037 1.69861 1.41688 1.33080 1.18321 0.85715 0.80487 0.78330 0.78960 1.18782 1.22208 1.19043 1.22432 1.02649 0.97831 0.94387 1.23124 0.93784 1.00192 1.02649 1.22974 1.03692 1.01827 0.93374 0.92547 0.91590 0.90264 0.88500 0.90809 0.87754 0.86061 0.88359 0.89383 0.90783 0.89700 0.97391 0.93482 0.79851 0.93258 0.84924 0.89806 0.85760 0.87417 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.89 71.98 0.71 -1.83 16 2 C -0.05 -1.11 6.55 29.85 0.20 -0.92 16 3 C 0.05 1.29 6.67 45.16 0.30 1.59 16 4 N -0.37 -8.62 12.01 -44.79 -0.54 -9.16 16 5 O 0.10 1.95 11.06 76.99 0.85 2.80 16 6 C 0.04 0.68 7.55 25.48 0.19 0.87 16 7 C -0.08 -0.74 10.33 71.24 0.74 0.00 16 8 C -0.27 -6.34 4.47 -18.75 -0.08 -6.42 16 9 C 0.60 17.43 7.45 86.66 0.65 18.08 16 10 O -0.57 -21.79 16.46 -4.08 -0.07 -21.86 16 11 N -0.58 -14.69 2.76 -826.50 -2.28 -16.98 16 12 C 0.07 1.22 8.98 127.77 1.15 2.36 16 13 C 0.17 5.25 2.34 44.99 0.11 5.36 16 14 H 0.07 2.73 6.76 -2.39 -0.02 2.71 16 15 C 0.16 6.00 5.50 86.38 0.47 6.48 16 16 N -0.75 -35.31 4.59 -343.45 -1.58 -36.88 16 17 C -0.23 -13.19 10.47 84.03 0.88 -12.31 16 18 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 19 C -0.05 -3.20 5.50 84.86 0.47 -2.73 16 20 N -0.98 -62.73 13.97 21.65 0.30 -62.43 16 21 Si 0.94 45.75 27.26 68.60 1.87 47.62 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.27 -12.25 6.68 99.48 0.66 -11.59 16 25 C -0.15 -3.83 5.04 -10.79 -0.05 -3.88 16 26 C -0.16 -3.54 10.18 30.62 0.31 -3.23 16 27 C -0.18 -5.15 9.47 30.62 0.29 -4.86 16 28 H 0.06 1.06 6.92 -2.39 -0.02 1.04 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.10 0.90 8.11 -2.39 -0.02 0.88 16 36 H 0.09 1.02 8.13 -2.38 -0.02 1.00 16 37 H 0.07 1.24 5.64 -2.39 -0.01 1.22 16 38 H 0.08 1.47 6.92 -2.39 -0.02 1.45 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.05 1.71 7.24 -2.39 -0.02 1.69 16 41 H 0.37 16.73 3.03 -92.71 -0.28 16.45 16 42 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 43 H 0.13 2.59 7.39 -2.39 -0.02 2.57 16 44 H 0.08 2.02 8.09 -2.39 -0.02 2.00 16 45 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 47 H 0.07 2.44 5.03 -2.38 -0.01 2.43 16 Total: -1.00 -76.27 382.28 5.54 -70.73 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.66 Total: 27.59 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 6.32 Total: -1.45 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -4.09 Total: -125.44 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.78 Total: -19.05 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.87 Total: 47.62 kcal Total: -76.27 5.54 -70.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755571941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.907 kcal (2) G-P(sol) polarization free energy of solvation -76.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds