Wall clock time and date at job start Tue Mar 31 2020 12:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99850 * 2 1 4 4 C 1.46898 * 111.00325 * 123.95135 * 2 1 3 5 5 C 1.53006 * 109.46528 * 66.05048 * 4 2 1 6 6 O 1.42894 * 109.47200 * 65.00158 * 5 4 2 7 7 C 1.35688 * 117.00297 * 179.97438 * 6 5 4 8 8 C 1.38894 * 119.62716 * 180.02562 * 7 6 5 9 9 C 1.39566 * 118.94658 * 180.25370 * 8 7 6 10 10 C 1.48159 * 120.89228 * 179.74616 * 9 8 7 11 11 O 1.21509 * 119.99949 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99996 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99804 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46829 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46822 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47024 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00109 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00248 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99521 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00234 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47360 * 90.00026 * 20 18 16 22 22 H 1.48499 * 109.47360 * 209.99874 * 20 18 16 23 23 H 1.48506 * 109.47160 * 330.00304 * 20 18 16 24 24 C 1.39976 * 118.21521 * 359.48626 * 9 8 7 25 25 C 1.37969 * 119.13454 * 0.55446 * 24 9 8 26 26 N 1.31908 * 120.97715 * 359.68597 * 25 24 9 27 27 H 1.09005 * 109.47309 * 296.03986 * 1 2 3 28 28 H 1.08997 * 109.47369 * 56.04634 * 1 2 3 29 29 H 1.09003 * 109.46709 * 176.04906 * 1 2 3 30 30 H 1.08997 * 109.47588 * 183.95320 * 3 2 1 31 31 H 1.09004 * 109.47111 * 303.95929 * 3 2 1 32 32 H 1.09000 * 109.46848 * 63.95163 * 3 2 1 33 33 H 1.08992 * 109.47567 * 306.05213 * 4 2 1 34 34 H 1.08998 * 109.46929 * 186.04352 * 4 2 1 35 35 H 1.08999 * 109.47124 * 304.99786 * 5 4 2 36 36 H 1.09006 * 109.46890 * 184.99970 * 5 4 2 37 37 H 1.08002 * 120.52328 * 359.97164 * 8 7 6 38 38 H 0.96997 * 119.99796 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.46972 * 299.99741 * 13 12 10 40 40 H 1.09001 * 109.47236 * 60.00183 * 13 12 10 41 41 H 1.08996 * 109.46967 * 299.99729 * 14 13 12 42 42 H 1.08995 * 109.47117 * 60.00246 * 14 13 12 43 43 H 1.08996 * 109.47179 * 299.99661 * 15 14 13 44 44 H 1.09001 * 109.47189 * 59.99831 * 15 14 13 45 45 H 0.97003 * 119.99696 * 179.97438 * 19 18 16 46 46 H 1.08000 * 120.43168 * 180.26207 * 24 9 8 47 47 H 1.08001 * 119.51247 * 179.70400 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9702 6 8 2.2957 -2.7695 -0.1801 7 6 2.0788 -4.0767 -0.4719 8 6 2.6976 -4.6452 -1.5778 9 6 2.4603 -5.9896 -1.8678 10 6 3.0934 -6.6383 -3.0398 11 8 3.8303 -5.9985 -3.7638 12 7 2.8521 -7.9379 -3.3028 13 6 3.4786 -8.5794 -4.4613 14 6 3.0418 -10.0441 -4.5314 15 6 3.6956 -10.7138 -5.7418 16 6 3.2659 -12.1566 -5.8105 17 1 2.5933 -12.5559 -5.0657 18 6 3.7305 -12.9668 -6.8248 19 7 4.5490 -12.4805 -7.7320 20 14 3.1972 -14.7550 -6.9104 21 1 1.9609 -14.8644 -7.7258 22 1 4.2750 -15.5636 -7.5347 23 1 2.9318 -15.2586 -5.5388 24 6 1.6124 -6.7102 -1.0186 25 6 1.0372 -6.0684 0.0589 26 7 1.2806 -4.7945 0.2993 27 1 -0.3634 0.4512 0.9234 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0827 1.3434 -0.0708 31 1 1.5897 1.9164 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 1.5612 -0.3873 2.0628 34 1 3.0798 -0.6610 1.1755 35 1 0.5533 -2.3389 0.8432 36 1 1.9440 -2.7964 1.8556 37 1 3.3485 -4.0551 -2.2059 38 1 2.2636 -8.4485 -2.7250 39 1 3.1712 -8.0650 -5.3718 40 1 4.5630 -8.5276 -4.3631 41 1 3.3488 -10.5587 -3.6210 42 1 1.9575 -10.0955 -4.6299 43 1 3.3882 -10.1991 -6.6520 44 1 4.7800 -10.6623 -5.6438 45 1 4.8762 -13.0506 -8.4454 46 1 1.4073 -7.7537 -1.2070 47 1 0.3783 -6.6173 0.7153 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183170043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:25 Heat of formation + Delta-G solvation = -40.535597 kcal Electronic energy + Delta-G solvation = -25476.804717 eV Core-core repulsion = 21659.963941 eV Total energy + Delta-G solvation = -3816.840776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.03740 -39.56855 -38.47446 -37.19995 -35.54065 -33.49776 -32.80826 -31.62288 -31.00882 -29.76647 -28.03946 -27.07551 -25.31870 -24.27622 -23.57224 -22.83915 -21.52527 -20.83329 -20.31205 -18.68589 -17.46303 -16.88619 -16.76742 -16.24032 -15.90651 -15.64904 -15.54937 -15.36511 -15.23853 -15.09560 -14.51685 -14.35912 -14.03554 -13.74485 -13.67935 -13.38852 -12.94945 -12.81065 -12.34362 -12.20309 -12.17998 -12.15930 -11.85719 -11.79260 -11.54289 -11.15857 -10.92414 -10.78341 -10.62722 -10.34549 -10.14153 -9.90579 -9.87409 -9.43942 -9.14570 -8.89342 -8.82341 -8.76130 -8.38819 -6.03374 -4.06661 0.50782 0.88723 2.61729 2.83878 3.24030 3.29879 3.36518 3.39139 3.45871 3.64280 3.98930 4.41616 4.43440 4.45171 4.59224 4.70706 4.74032 4.78279 4.81501 4.91104 4.98479 5.10839 5.12154 5.18800 5.32530 5.34525 5.44405 5.46351 5.52120 5.54375 5.66022 5.72272 5.82121 6.03113 6.11003 6.35944 6.50884 6.54035 6.54744 6.75865 6.95392 6.99932 7.50763 7.55547 7.61274 7.73346 7.94932 8.19447 8.35968 8.99863 9.57678 11.07850 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.034363 B = 0.001671 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.622522 B =16753.050670 C =17247.796696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.542 5.542 3 C 0.025 3.975 4 C 0.052 3.948 5 C 0.075 3.925 6 O -0.286 6.286 7 C 0.321 3.679 8 C -0.133 4.133 9 C -0.048 4.048 10 C 0.551 3.449 11 O -0.528 6.528 12 N -0.714 5.714 13 C 0.115 3.885 14 C -0.121 4.121 15 C 0.023 3.977 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.184 4.184 25 C 0.137 3.863 26 N -0.532 5.532 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.154 0.846 38 H 0.399 0.601 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.143 0.857 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.989 23.380 21.399 32.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.266 5.266 3 C -0.123 4.123 4 C -0.076 4.076 5 C -0.001 4.001 6 O -0.193 6.193 7 C 0.142 3.858 8 C -0.154 4.154 9 C -0.058 4.058 10 C 0.336 3.664 11 O -0.405 6.405 12 N -0.365 5.365 13 C -0.007 4.007 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.205 4.205 25 C -0.018 4.018 26 N -0.257 5.257 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.172 0.828 38 H 0.234 0.766 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.161 0.839 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.397 24.164 20.832 32.990 hybrid contribution -0.633 -1.355 0.371 1.541 sum -9.030 22.808 21.203 32.424 Atomic orbital electron populations 1.22477 0.87285 1.02538 1.00578 1.61940 1.08022 1.13967 1.42676 1.22392 1.01050 0.88383 1.00491 1.22262 1.01729 0.91591 0.92036 1.22688 0.97538 0.92853 0.86995 1.86355 1.66645 1.19606 1.46645 1.19699 0.90835 0.84935 0.90359 1.21141 1.02404 0.94519 0.97351 1.20240 0.96527 0.93682 0.95380 1.18100 0.81611 0.82371 0.84324 1.90796 1.36848 1.63650 1.49244 1.46121 1.49415 1.10259 1.30723 1.21749 0.97834 0.94445 0.86687 1.21906 1.00726 0.91321 1.01981 1.19036 0.96052 0.94924 0.91420 1.21195 1.28503 0.95387 1.11104 0.92625 1.25028 0.95072 0.98665 0.95673 1.69964 1.32603 1.36137 1.14477 0.86578 0.78254 0.84873 0.78178 1.20661 1.21201 1.19899 1.22184 0.99723 1.01728 0.96884 1.22338 0.95980 0.88705 0.94798 1.67215 1.17957 1.09346 1.31226 0.95611 0.91105 0.91158 0.91100 0.91145 0.95738 0.92488 0.89447 0.91325 0.91088 0.82781 0.76564 0.91355 0.91353 0.92603 0.92607 0.96199 0.96194 0.92909 0.83940 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.33 60.06 0.56 0.69 16 2 N -0.54 -4.22 4.97 -251.26 -1.25 -5.47 16 3 C 0.02 0.15 9.57 60.07 0.57 0.72 16 4 C 0.05 0.35 5.34 -3.82 -0.02 0.33 16 5 C 0.08 0.61 5.36 37.16 0.20 0.81 16 6 O -0.29 -3.21 10.06 -18.77 -0.19 -3.40 16 7 C 0.32 3.77 7.49 -17.16 -0.13 3.64 16 8 C -0.13 -1.67 9.61 -38.84 -0.37 -2.04 16 9 C -0.05 -0.59 5.91 -104.68 -0.62 -1.20 16 10 C 0.55 8.32 7.80 -12.18 -0.10 8.23 16 11 O -0.53 -9.98 16.44 5.36 0.09 -9.89 16 12 N -0.71 -9.98 5.51 -61.15 -0.34 -10.31 16 13 C 0.12 1.97 5.67 -4.04 -0.02 1.94 16 14 C -0.12 -2.29 5.27 -26.73 -0.14 -2.44 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.18 -1.71 9.61 -39.03 -0.38 -2.08 16 25 C 0.14 1.18 11.17 -17.62 -0.20 0.99 16 26 N -0.53 -5.64 9.18 -13.38 -0.12 -5.76 16 27 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.07 0.50 6.37 -51.93 -0.33 0.16 16 30 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.02 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.06 0.29 8.12 -51.93 -0.42 -0.13 16 34 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 35 H 0.07 0.56 6.30 -51.93 -0.33 0.24 16 36 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.15 2.02 7.74 -52.49 -0.41 1.62 16 38 H 0.40 4.33 6.61 -40.82 -0.27 4.06 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.14 0.96 6.53 -52.49 -0.34 0.61 16 47 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -33.59 393.42 -8.90 -42.49 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.55 Total: -0.81 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -1.19 Total: -3.20 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.97 Total: -47.38 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.10 Total: -13.29 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.59 -8.90 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183170043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.952 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds