Wall clock time and date at job start Tue Mar 31 2020 13:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38149 * 119.89104 * 2 1 4 4 C 1.38209 * 119.93330 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.93657 * 0.02562 * 4 3 2 6 6 C 1.38455 * 120.21662 * 0.02562 * 5 4 3 7 7 C 1.38263 * 119.84555 * 359.97311 * 6 5 4 8 8 C 1.51367 * 109.74889 * 180.02562 * 7 6 5 9 9 C 1.54493 * 105.22266 * 17.12579 * 8 7 6 10 10 C 1.51366 * 130.40283 * 179.97438 * 6 5 4 11 11 H 1.08993 * 110.30482 * 281.83053 * 10 6 5 12 12 N 1.46906 * 110.30075 * 43.88232 * 10 6 5 13 13 C 1.46895 * 110.99765 * 205.28987 * 12 10 6 14 14 H 1.08998 * 109.47328 * 322.86559 * 13 12 10 15 15 C 1.53007 * 109.47010 * 202.86563 * 13 12 10 16 16 C 1.50695 * 109.46883 * 65.00329 * 15 13 12 17 17 H 1.07995 * 120.00227 * 359.97438 * 16 15 13 18 18 C 1.37881 * 119.99659 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00093 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47247 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47018 * 59.99997 * 20 18 16 23 23 H 1.48499 * 109.47241 * 299.99661 * 20 18 16 24 24 C 1.50701 * 109.47036 * 82.86730 * 13 12 10 25 25 C 1.38241 * 119.99879 * 46.15059 * 24 13 12 26 26 C 1.38234 * 119.99513 * 179.76511 * 25 24 13 27 27 C 1.38239 * 120.00242 * 0.50514 * 26 25 24 28 28 C 1.38230 * 119.99948 * 359.74557 * 27 26 25 29 29 C 1.38236 * 120.00202 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47380 * 89.99929 * 1 2 3 31 31 H 1.09005 * 109.47304 * 209.99532 * 1 2 3 32 32 H 1.09002 * 109.47612 * 329.99675 * 1 2 3 33 33 H 1.07998 * 120.03229 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.02990 * 180.02562 * 4 3 2 35 35 H 1.08000 * 119.89538 * 179.97438 * 5 4 3 36 36 H 1.09001 * 110.29994 * 136.11871 * 8 7 6 37 37 H 1.09002 * 110.30356 * 258.16928 * 8 7 6 38 38 H 1.08991 * 110.90562 * 215.53609 * 9 8 7 39 39 H 1.08999 * 110.79735 * 91.93971 * 9 8 7 40 40 H 1.00898 * 110.99840 * 329.24727 * 12 10 6 41 41 H 1.09003 * 109.47009 * 304.99901 * 15 13 12 42 42 H 1.09000 * 109.46771 * 185.00480 * 15 13 12 43 43 H 0.97002 * 120.00259 * 359.97438 * 19 18 16 44 44 H 1.07993 * 119.99822 * 359.97438 * 25 24 13 45 45 H 1.08005 * 120.00046 * 180.22688 * 26 25 24 46 46 H 1.07999 * 119.99690 * 179.72287 * 27 26 25 47 47 H 1.07999 * 120.00343 * 179.97438 * 28 27 26 48 48 H 1.07995 * 120.00209 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1977 0.0000 4 6 3.5775 1.1987 0.0005 5 6 4.2678 0.0021 0.0005 6 6 3.5796 -1.1993 -0.0005 7 6 2.1970 -1.2003 -0.0010 8 6 1.6865 -2.6253 -0.0016 9 6 2.8908 -3.4877 0.4376 10 6 4.0922 -2.6235 -0.0013 11 1 4.4178 -2.9078 -1.0018 12 7 5.1988 -2.7675 0.9541 13 6 6.0797 -3.8803 0.5754 14 1 5.4810 -4.6960 0.1702 15 6 6.8412 -4.3704 1.8088 16 6 5.8680 -4.9524 2.8014 17 1 4.8121 -4.9704 2.5754 18 6 6.3257 -5.4608 3.9985 19 7 7.6115 -5.4383 4.2739 20 14 5.1194 -6.1815 5.2293 21 1 5.8583 -6.6562 6.4268 22 1 4.3993 -7.3215 4.6072 23 1 4.1416 -5.1391 5.6327 24 6 7.0614 -3.4114 -0.4674 25 6 7.7286 -2.2124 -0.2991 26 6 8.6326 -1.7847 -1.2534 27 6 8.8617 -2.5508 -2.3810 28 6 8.1907 -3.7472 -2.5518 29 6 7.2902 -4.1773 -1.5953 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6542 2.1323 0.0004 34 1 4.1173 2.1341 0.0010 35 1 5.3478 0.0037 0.0005 36 1 0.8651 -2.7330 0.7067 37 1 1.3621 -2.9105 -1.0023 38 1 2.8929 -4.4459 -0.0817 39 1 2.8904 -3.6313 1.5181 40 1 5.7188 -1.9068 1.0375 41 1 7.3697 -3.5338 2.2657 42 1 7.5589 -5.1353 1.5123 43 1 8.2379 -5.0644 3.6346 44 1 7.5460 -1.6116 0.5795 45 1 9.1566 -0.8497 -1.1202 46 1 9.5647 -2.2144 -3.1287 47 1 8.3693 -4.3456 -3.4330 48 1 6.7656 -5.1118 -1.7289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358338321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:19 Heat of formation + Delta-G solvation = 34.664886 kcal Electronic energy + Delta-G solvation = -26912.284965 eV Core-core repulsion = 23509.554389 eV Total energy + Delta-G solvation = -3402.730575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.31275 -39.17250 -36.61545 -34.78469 -33.16642 -32.51401 -30.75422 -30.33182 -28.91221 -28.45031 -26.62329 -25.57763 -23.95454 -22.46801 -21.95082 -21.89728 -20.94370 -19.91132 -19.39559 -17.07277 -16.44976 -16.13871 -15.77644 -15.28325 -15.10379 -14.71294 -14.57332 -13.95103 -13.77619 -13.61964 -13.44654 -13.29360 -13.13413 -13.00857 -12.62307 -12.57822 -12.30207 -12.05746 -12.01558 -11.68451 -11.44222 -11.14423 -11.10302 -10.96186 -10.87645 -10.76162 -10.61146 -10.56465 -10.22417 -10.04445 -9.83992 -8.75103 -8.69035 -8.51869 -8.45318 -8.23560 -8.19574 -7.69737 -6.19477 -3.85119 1.42840 1.44298 1.61344 1.62117 3.51736 3.55107 3.72675 3.77791 4.03006 4.55642 4.65228 4.66676 4.74787 4.91646 5.01135 5.08949 5.11674 5.20450 5.24891 5.26935 5.36203 5.40068 5.45023 5.52736 5.57263 5.67397 5.69750 5.72210 5.75651 5.78362 5.81295 5.95052 6.03341 6.11841 6.19846 6.22341 6.29201 6.36496 6.54399 6.56699 6.60205 6.66646 6.68885 6.72659 6.79078 6.89289 7.07626 7.23888 7.31410 7.40817 7.81553 7.97404 8.38991 8.67088 9.04715 9.83375 11.20701 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.008018 B = 0.005217 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.328300 B = 5366.201660 C = 7835.718845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.125 4.125 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.082 4.082 7 C -0.089 4.089 8 C -0.080 4.080 9 C -0.108 4.108 10 C 0.124 3.876 11 H 0.054 0.946 12 N -0.646 5.646 13 C 0.136 3.864 14 H 0.076 0.924 15 C 0.029 3.971 16 C -0.569 4.569 17 H 0.054 0.946 18 C 0.009 3.991 19 N -0.922 5.922 20 Si 1.066 2.934 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.289 1.289 24 C -0.095 4.095 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.135 4.135 28 C -0.121 4.121 29 C -0.118 4.118 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.333 0.667 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.266 0.734 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.482 10.764 -13.939 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.078 4.078 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.127 4.127 6 C -0.083 4.083 7 C -0.089 4.089 8 C -0.118 4.118 9 C -0.146 4.146 10 C 0.015 3.985 11 H 0.072 0.928 12 N -0.276 5.276 13 C 0.026 3.974 14 H 0.094 0.906 15 C -0.008 4.008 16 C -0.607 4.607 17 H 0.073 0.927 18 C -0.193 4.193 19 N -0.560 5.560 20 Si 0.896 3.104 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.216 1.216 24 C -0.097 4.097 25 C -0.136 4.136 26 C -0.137 4.137 27 C -0.153 4.153 28 C -0.139 4.139 29 C -0.136 4.136 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.154 0.846 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.076 0.924 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.976 9.662 -11.970 17.810 hybrid contribution 0.839 1.262 -2.326 2.776 sum -8.137 10.923 -14.296 19.746 Atomic orbital electron populations 1.20751 0.91573 1.02626 1.01942 1.19403 0.95710 0.91947 1.00785 1.20856 0.94223 0.96979 1.02260 1.20936 0.94232 0.97491 1.00971 1.20564 0.99640 0.91454 1.01021 1.20689 0.94398 0.94690 0.98480 1.20400 0.94028 0.94593 0.99886 1.21084 0.98866 0.90452 1.01371 1.22439 0.91647 0.97011 1.03512 1.21084 0.93168 0.89851 0.94435 0.92849 1.60846 1.11957 1.07749 1.47088 1.20870 0.90562 0.92402 0.93557 0.90561 1.19197 0.95202 0.95215 0.91185 1.21884 0.94489 1.41169 1.03207 0.92749 1.25735 0.99006 0.96172 0.98380 1.70781 1.02154 1.44410 1.38640 0.83578 0.74703 0.76134 0.76022 1.21155 1.21716 1.21575 1.21225 0.98302 0.94273 0.95911 1.20968 0.97012 0.96751 0.98872 1.21069 0.98371 0.99713 0.94516 1.21023 1.00595 0.95612 0.98091 1.21088 0.97123 0.96577 0.99092 1.21103 0.98860 0.99654 0.94014 0.91516 0.91513 0.91835 0.86280 0.86167 0.86675 0.90813 0.90761 0.91144 0.88903 0.84629 0.97333 0.97347 0.92404 0.86351 0.86538 0.86695 0.86591 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.87 36.00 0.36 -0.71 16 2 C -0.08 -0.98 5.88 -104.58 -0.62 -1.59 16 3 C -0.13 -1.48 9.69 -39.62 -0.38 -1.86 16 4 C -0.12 -1.45 10.05 -39.63 -0.40 -1.85 16 5 C -0.11 -1.52 9.47 -39.54 -0.37 -1.90 16 6 C -0.08 -1.25 5.75 -104.21 -0.60 -1.84 16 7 C -0.09 -1.24 6.00 -104.21 -0.63 -1.87 16 8 C -0.08 -1.03 6.27 -26.77 -0.17 -1.20 16 9 C -0.11 -1.65 6.73 -25.23 -0.17 -1.82 16 10 C 0.12 2.00 2.96 -67.82 -0.20 1.80 16 11 H 0.05 0.87 7.60 -51.93 -0.39 0.48 16 12 N -0.65 -12.08 5.77 -101.07 -0.58 -12.66 16 13 C 0.14 2.71 2.04 -68.86 -0.14 2.57 16 14 H 0.08 1.55 7.66 -51.93 -0.40 1.16 16 15 C 0.03 0.73 3.88 -27.88 -0.11 0.63 16 16 C -0.57 -15.85 8.84 -34.44 -0.30 -16.16 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.01 0.27 5.46 -17.82 -0.10 0.17 16 19 N -0.92 -28.58 13.65 55.43 0.76 -27.82 16 20 Si 1.07 25.86 29.90 -169.99 -5.08 20.78 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.10 -1.67 4.52 -104.62 -0.47 -2.14 16 25 C -0.12 -1.92 9.00 -39.58 -0.36 -2.27 16 26 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 27 C -0.14 -1.81 10.05 -39.58 -0.40 -2.20 16 28 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 29 C -0.12 -1.88 9.67 -39.58 -0.38 -2.26 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.62 7.29 -51.93 -0.38 0.24 16 32 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.53 7.63 -52.49 -0.40 1.13 16 36 H 0.07 0.87 7.62 -51.93 -0.40 0.47 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 40 H 0.33 6.02 5.48 -39.29 -0.22 5.80 16 41 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 42 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 43 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 44 H 0.12 1.91 6.85 -52.49 -0.36 1.55 16 45 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 46 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 48 H 0.12 1.77 7.99 -52.49 -0.42 1.35 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -31.58 386.84 -12.83 -44.40 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.51 Total: 8.14 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: -6.23 Total: -38.67 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.17 Total: -40.48 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.08 Total: 20.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.58 -12.83 -44.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358338321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.068 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds