Wall clock time and date at job start Tue Mar 31 2020 12:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35724 * 116.99404 * 2 1 4 4 C 1.39234 * 120.38060 * 180.02562 * 3 2 1 5 5 C 1.38320 * 118.44618 * 180.02562 * 4 3 2 6 6 C 1.39468 * 119.13276 * 0.02562 * 5 4 3 7 7 C 1.47921 * 119.65937 * 180.02562 * 6 5 4 8 8 O 1.21548 * 119.99841 * 353.47309 * 7 6 5 9 9 N 1.34776 * 120.00437 * 173.20311 * 7 6 5 10 10 C 1.46501 * 119.99799 * 354.88008 * 9 7 6 11 11 C 1.50693 * 109.47274 * 84.94941 * 10 9 7 12 12 H 1.07999 * 119.99996 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00303 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99763 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00428 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47098 * 89.99939 * 15 13 11 17 17 H 1.48495 * 109.47316 * 210.00125 * 15 13 11 18 18 H 1.48502 * 109.46959 * 330.00013 * 15 13 11 19 19 C 1.46500 * 120.00412 * 174.88131 * 9 7 6 20 20 C 1.52999 * 109.47349 * 89.99515 * 19 9 7 21 21 C 1.52992 * 109.47557 * 180.02562 * 20 19 9 22 22 N 1.46896 * 109.47547 * 179.97438 * 21 20 19 23 23 C 1.46905 * 110.99586 * 66.04900 * 22 21 20 24 24 C 1.46898 * 111.00316 * 189.99961 * 22 21 20 25 25 N 1.32799 * 120.68611 * 0.26806 * 6 5 4 26 26 C 1.31385 * 121.69277 * 359.43929 * 25 6 5 27 27 H 1.08996 * 109.47788 * 59.99967 * 1 2 3 28 28 H 1.09000 * 109.46530 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46868 * 299.99306 * 1 2 3 30 30 H 1.07997 * 120.77653 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.43433 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47298 * 204.95514 * 10 9 7 33 33 H 1.09001 * 109.46953 * 324.95249 * 10 9 7 34 34 H 0.97000 * 119.99948 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.47219 * 210.00188 * 19 9 7 36 36 H 1.09003 * 109.46648 * 329.99818 * 19 9 7 37 37 H 1.09002 * 109.47328 * 300.00804 * 20 19 9 38 38 H 1.09004 * 109.46951 * 59.99963 * 20 19 9 39 39 H 1.09002 * 109.47375 * 300.00673 * 21 20 19 40 40 H 1.09004 * 109.47104 * 59.99955 * 21 20 19 41 41 H 1.08998 * 109.47201 * 59.99990 * 23 22 21 42 42 H 1.09006 * 109.46873 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.47320 * 299.99831 * 23 22 21 44 44 H 1.09002 * 109.47323 * 59.99898 * 24 22 21 45 45 H 1.08998 * 109.47423 * 180.02562 * 24 22 21 46 46 H 1.09000 * 109.47029 * 300.00266 * 24 22 21 47 47 H 1.07995 * 119.59902 * 180.29320 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4350 1.2916 -0.0005 5 6 4.0209 2.5446 0.0000 6 6 3.2049 3.6757 0.0017 7 6 3.8191 5.0213 0.0017 8 8 5.0230 5.1399 0.1200 9 7 3.0445 6.1158 -0.1349 10 6 1.6102 5.9701 -0.3955 11 6 0.8781 5.7907 0.9094 12 1 1.4263 5.7861 1.8399 13 6 -0.4915 5.6324 0.9154 14 7 -1.1590 5.6375 -0.2177 15 14 -1.3991 5.4107 2.5330 16 1 -1.7994 6.7392 3.0621 17 1 -2.6103 4.5807 2.3114 18 1 -0.5089 4.7360 3.5116 19 6 3.6366 7.4511 -0.0227 20 6 4.1003 7.9210 -1.4030 21 6 4.7192 9.3152 -1.2858 22 7 5.1650 9.7661 -2.6109 23 6 4.0214 9.9660 -3.5110 24 6 5.9729 10.9885 -2.5068 25 7 1.8822 3.5571 0.0080 26 6 1.2945 2.3821 0.0020 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.0415 0.3980 -0.0014 31 1 5.0961 2.6458 -0.0008 32 1 1.2401 6.8625 -0.9001 33 1 1.4427 5.0989 -1.0288 34 1 -2.1226 5.5257 -0.2135 35 1 2.8934 8.1465 0.3672 36 1 4.4901 7.4142 0.6542 37 1 4.8434 7.2254 -1.7929 38 1 3.2467 7.9577 -2.0799 39 1 3.9764 10.0109 -0.8956 40 1 5.5729 9.2780 -0.6089 41 1 3.3557 10.7200 -3.0909 42 1 4.3796 10.3001 -4.4848 43 1 3.4803 9.0268 -3.6252 44 1 6.8506 10.7926 -1.8908 45 1 6.2894 11.3007 -3.5020 46 1 5.3779 11.7795 -2.0503 47 1 0.2160 2.3251 0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360312607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:26 Heat of formation + Delta-G solvation = -9.124020 kcal Electronic energy + Delta-G solvation = -27774.589387 eV Core-core repulsion = 23959.110720 eV Total energy + Delta-G solvation = -3815.478668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.40150 -39.03521 -37.71055 -37.22054 -35.19109 -32.82885 -32.03839 -31.38965 -30.01495 -27.60111 -27.47649 -27.19197 -25.91424 -23.82321 -22.92629 -22.79752 -21.91977 -20.61164 -19.09913 -17.86616 -16.96264 -16.56040 -16.25403 -15.68972 -15.63550 -15.43092 -14.94253 -14.74193 -14.49886 -14.23070 -14.12426 -13.88541 -13.78575 -13.20135 -12.88395 -12.82904 -12.38001 -12.27849 -12.15833 -12.03039 -11.85884 -11.73206 -11.56039 -11.35894 -11.26196 -11.11619 -11.05250 -10.86384 -10.63011 -10.22235 -10.02529 -9.62407 -9.37582 -9.30469 -8.47451 -8.31556 -8.20051 -8.07344 -7.60468 -5.99302 -3.95553 1.24494 1.70601 3.26043 3.31581 3.33617 3.37679 3.44796 3.81376 4.11649 4.43408 4.50713 4.91766 4.94944 5.10743 5.14476 5.18202 5.24535 5.26085 5.34173 5.37048 5.42099 5.42648 5.55338 5.58561 5.67395 5.70594 5.74947 5.80342 5.83406 5.92384 6.00289 6.04371 6.18536 6.24863 6.35930 6.53855 6.67568 6.79060 6.90637 7.07014 7.10712 7.36921 7.53055 7.75005 7.92904 8.31418 8.35566 8.50186 8.96693 9.07720 9.61769 11.09098 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011432 B = 0.004075 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.717133 B = 6870.153409 C = 8507.362347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.316 6.316 3 C 0.085 3.915 4 C -0.135 4.135 5 C -0.081 4.081 6 C 0.035 3.965 7 C 0.570 3.430 8 O -0.572 6.572 9 N -0.577 5.577 10 C 0.241 3.759 11 C -0.481 4.481 12 H 0.051 0.949 13 C 0.066 3.934 14 N -0.894 5.894 15 Si 0.881 3.119 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.122 3.878 20 C -0.129 4.129 21 C 0.059 3.941 22 N -0.549 5.549 23 C 0.021 3.979 24 C 0.025 3.975 25 N -0.334 5.334 26 C 0.015 3.985 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.024 0.976 33 H 0.065 0.935 34 H 0.258 0.742 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.023 0.977 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.944 -1.572 -3.408 7.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.227 6.227 3 C 0.037 3.963 4 C -0.161 4.161 5 C -0.102 4.102 6 C -0.103 4.103 7 C 0.358 3.642 8 O -0.453 6.453 9 N -0.305 5.305 10 C 0.122 3.878 11 C -0.521 4.521 12 H 0.069 0.931 13 C -0.134 4.134 14 N -0.535 5.535 15 Si 0.709 3.291 16 H -0.209 1.209 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.002 4.002 20 C -0.168 4.168 21 C -0.069 4.069 22 N -0.272 5.272 23 C -0.127 4.127 24 C -0.123 4.123 25 N -0.045 5.045 26 C -0.146 4.146 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.043 0.957 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.041 0.959 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.232 -1.300 -3.614 7.321 hybrid contribution -1.176 -0.168 1.340 1.791 sum 5.056 -1.468 -2.274 5.735 Atomic orbital electron populations 1.23117 0.78010 1.03790 1.02252 1.85964 1.21708 1.26672 1.88398 1.20509 0.93327 0.85783 0.96722 1.20684 0.91418 0.98353 1.05634 1.21882 1.01592 0.90961 0.95736 1.21168 0.90107 0.94164 1.04840 1.17776 0.85510 0.83892 0.77049 1.90674 1.14165 1.86802 1.53670 1.48175 1.11761 1.03886 1.66644 1.19807 0.72394 0.98112 0.97529 1.21208 0.91546 1.46917 0.92419 0.93103 1.24721 0.97242 0.95926 0.95555 1.69929 1.07490 1.51226 1.24842 0.86782 0.79381 0.78154 0.84776 1.20865 1.21342 1.20209 1.21263 0.98426 0.84385 0.96167 1.21941 1.00814 0.95565 0.98433 1.22080 0.99035 0.96253 0.89553 1.61976 1.21995 1.31463 1.11800 1.22442 0.92406 1.01458 0.96410 1.22363 0.97616 0.90555 1.01786 1.68764 1.09113 1.23948 1.02684 1.23260 1.00994 0.86750 1.03580 0.92073 0.88312 0.92198 0.84325 0.83694 0.95755 0.91717 0.93184 0.90497 0.91046 0.90900 0.91687 0.94709 0.90760 0.95668 0.91799 0.90704 0.91453 0.91661 0.95876 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.82 101.05 0.99 1.25 16 2 O -0.32 -4.55 10.50 -18.88 -0.20 -4.75 16 3 C 0.08 1.39 6.72 -38.84 -0.26 1.13 16 4 C -0.13 -2.09 10.12 -39.18 -0.40 -2.49 16 5 C -0.08 -1.40 9.62 -39.09 -0.38 -1.78 16 6 C 0.04 0.74 6.55 -83.03 -0.54 0.19 16 7 C 0.57 12.56 7.60 -12.30 -0.09 12.47 16 8 O -0.57 -12.98 15.97 5.32 0.09 -12.90 16 9 N -0.58 -12.50 2.47 -176.15 -0.43 -12.94 16 10 C 0.24 5.81 4.74 -5.20 -0.02 5.78 16 11 C -0.48 -12.47 7.42 -34.44 -0.26 -12.73 16 12 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -24.15 13.29 55.43 0.74 -23.42 16 15 Si 0.88 20.57 29.54 -169.99 -5.02 15.55 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 C 0.12 2.25 5.34 -4.04 -0.02 2.22 16 20 C -0.13 -2.10 5.46 -26.74 -0.15 -2.25 16 21 C 0.06 0.82 4.96 -3.83 -0.02 0.80 16 22 N -0.55 -7.24 5.02 -251.26 -1.26 -8.50 16 23 C 0.02 0.26 9.32 60.07 0.56 0.82 16 24 C 0.03 0.27 9.57 60.06 0.57 0.84 16 25 N -0.33 -7.25 4.76 -9.68 -0.05 -7.30 16 26 C 0.02 0.29 10.21 -17.37 -0.18 0.11 16 27 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 30 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.15 2.30 7.65 -52.49 -0.40 1.90 16 32 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 33 H 0.07 1.66 5.74 -51.93 -0.30 1.36 16 34 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 36 H 0.07 1.31 7.50 -51.93 -0.39 0.92 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.10 6.56 -51.93 -0.34 0.76 16 39 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 40 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 41 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 43 H 0.07 0.97 6.47 -51.93 -0.34 0.64 16 44 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 45 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 46 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.16 2.86 6.31 -52.49 -0.33 2.53 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -30.16 384.75 -8.12 -38.28 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.49 Total: 2.16 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -0.29 Total: 8.00 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -1.01 Total: -52.15 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.11 Total: -17.64 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.16 -8.12 -38.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360312607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.161 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds