Wall clock time and date at job start Tue Mar 31 2020 12:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35724 * 116.99404 * 2 1 4 4 C 1.39234 * 120.38060 * 180.02562 * 3 2 1 5 5 C 1.38320 * 118.44618 * 180.02562 * 4 3 2 6 6 C 1.39468 * 119.13276 * 0.02562 * 5 4 3 7 7 C 1.47921 * 119.65937 * 180.02562 * 6 5 4 8 8 O 1.21548 * 119.99841 * 353.47309 * 7 6 5 9 9 N 1.34776 * 120.00437 * 173.20311 * 7 6 5 10 10 C 1.46501 * 119.99799 * 354.88008 * 9 7 6 11 11 C 1.50693 * 109.47274 * 84.94941 * 10 9 7 12 12 H 1.07999 * 119.99996 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00303 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99763 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00428 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47098 * 89.99939 * 15 13 11 17 17 H 1.48495 * 109.47316 * 210.00125 * 15 13 11 18 18 H 1.48502 * 109.46959 * 330.00013 * 15 13 11 19 19 C 1.46500 * 120.00412 * 174.88131 * 9 7 6 20 20 C 1.52999 * 109.47349 * 89.99515 * 19 9 7 21 21 C 1.52992 * 109.47557 * 180.02562 * 20 19 9 22 22 N 1.46896 * 109.47547 * 179.97438 * 21 20 19 23 23 C 1.46905 * 110.99586 * 66.04900 * 22 21 20 24 24 C 1.46898 * 111.00316 * 189.99961 * 22 21 20 25 25 N 1.32799 * 120.68611 * 0.26806 * 6 5 4 26 26 C 1.31385 * 121.69277 * 359.43929 * 25 6 5 27 27 H 1.08996 * 109.47788 * 59.99967 * 1 2 3 28 28 H 1.09000 * 109.46530 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46868 * 299.99306 * 1 2 3 30 30 H 1.07997 * 120.77653 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.43433 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47298 * 204.95514 * 10 9 7 33 33 H 1.09001 * 109.46953 * 324.95249 * 10 9 7 34 34 H 0.97000 * 119.99948 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.47219 * 210.00188 * 19 9 7 36 36 H 1.09003 * 109.46648 * 329.99818 * 19 9 7 37 37 H 1.09002 * 109.47328 * 300.00804 * 20 19 9 38 38 H 1.09004 * 109.46951 * 59.99963 * 20 19 9 39 39 H 1.09002 * 109.47375 * 300.00673 * 21 20 19 40 40 H 1.09004 * 109.47104 * 59.99955 * 21 20 19 41 41 H 1.08998 * 109.47201 * 59.99990 * 23 22 21 42 42 H 1.09006 * 109.46873 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.47320 * 299.99831 * 23 22 21 44 44 H 1.09002 * 109.47323 * 59.99898 * 24 22 21 45 45 H 1.08998 * 109.47423 * 180.02562 * 24 22 21 46 46 H 1.09000 * 109.47029 * 300.00266 * 24 22 21 47 47 H 1.07995 * 119.59902 * 180.29320 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4350 1.2916 -0.0005 5 6 4.0209 2.5446 0.0000 6 6 3.2049 3.6757 0.0017 7 6 3.8191 5.0213 0.0017 8 8 5.0230 5.1399 0.1200 9 7 3.0445 6.1158 -0.1349 10 6 1.6102 5.9701 -0.3955 11 6 0.8781 5.7907 0.9094 12 1 1.4263 5.7861 1.8399 13 6 -0.4915 5.6324 0.9154 14 7 -1.1590 5.6375 -0.2177 15 14 -1.3991 5.4107 2.5330 16 1 -1.7994 6.7392 3.0621 17 1 -2.6103 4.5807 2.3114 18 1 -0.5089 4.7360 3.5116 19 6 3.6366 7.4511 -0.0227 20 6 4.1003 7.9210 -1.4030 21 6 4.7192 9.3152 -1.2858 22 7 5.1650 9.7661 -2.6109 23 6 4.0214 9.9660 -3.5110 24 6 5.9729 10.9885 -2.5068 25 7 1.8822 3.5571 0.0080 26 6 1.2945 2.3821 0.0020 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.0415 0.3980 -0.0014 31 1 5.0961 2.6458 -0.0008 32 1 1.2401 6.8625 -0.9001 33 1 1.4427 5.0989 -1.0288 34 1 -2.1226 5.5257 -0.2135 35 1 2.8934 8.1465 0.3672 36 1 4.4901 7.4142 0.6542 37 1 4.8434 7.2254 -1.7929 38 1 3.2467 7.9577 -2.0799 39 1 3.9764 10.0109 -0.8956 40 1 5.5729 9.2780 -0.6089 41 1 3.3557 10.7200 -3.0909 42 1 4.3796 10.3001 -4.4848 43 1 3.4803 9.0268 -3.6252 44 1 6.8506 10.7926 -1.8908 45 1 6.2894 11.3007 -3.5020 46 1 5.3779 11.7795 -2.0503 47 1 0.2160 2.3251 0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360312607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:25 Heat of formation + Delta-G solvation = -27.717159 kcal Electronic energy + Delta-G solvation = -27775.395646 eV Core-core repulsion = 23959.110720 eV Total energy + Delta-G solvation = -3816.284927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.82916 -40.53100 -38.90213 -38.48733 -36.88351 -34.62607 -33.51838 -32.87661 -31.39092 -29.10723 -28.51857 -28.47201 -27.26017 -25.33501 -24.60702 -24.20001 -23.25514 -21.79193 -20.68545 -19.09580 -18.62949 -18.23967 -17.95114 -17.01911 -16.83702 -16.56034 -16.41505 -16.20255 -16.01649 -15.67608 -15.46551 -15.14315 -15.00191 -14.61993 -14.34065 -14.24753 -14.09354 -13.73458 -13.38520 -13.23622 -13.08248 -13.05655 -12.76904 -12.70919 -12.61622 -12.52143 -12.43021 -12.33407 -12.25799 -11.98500 -11.60241 -11.47960 -11.07257 -10.72637 -10.41308 -9.77048 -9.55577 -9.31987 -9.29179 -8.00690 -6.03149 -0.19780 0.35268 1.39279 1.42883 1.50661 1.83924 2.16515 2.28011 2.51036 2.96096 3.06583 3.32051 3.43143 3.62626 3.79214 3.94002 4.03682 4.14471 4.23968 4.30380 4.36190 4.38980 4.41834 4.46199 4.51439 4.61145 4.65249 4.67796 4.72487 4.75643 4.80172 4.90679 5.00374 5.01344 5.01643 5.05603 5.17685 5.27751 5.41887 5.55266 5.86021 5.94587 6.05279 6.12953 6.17091 6.31503 6.57609 6.92412 7.04649 7.35831 7.58010 9.07262 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011432 B = 0.004075 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.717133 B = 6870.153409 C = 8507.362347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.312 6.312 3 C 0.101 3.899 4 C -0.123 4.123 5 C -0.072 4.072 6 C 0.001 3.999 7 C 0.564 3.436 8 O -0.585 6.585 9 N -0.583 5.583 10 C 0.261 3.739 11 C -0.483 4.483 12 H 0.033 0.967 13 C 0.033 3.967 14 N -0.919 5.919 15 Si 0.933 3.067 16 H -0.281 1.281 17 H -0.278 1.278 18 H -0.282 1.282 19 C 0.120 3.880 20 C -0.112 4.112 21 C 0.067 3.933 22 N -0.565 5.565 23 C 0.022 3.978 24 C 0.025 3.975 25 N -0.370 5.370 26 C -0.002 4.002 27 H 0.061 0.939 28 H 0.135 0.865 29 H 0.057 0.943 30 H 0.179 0.821 31 H 0.160 0.840 32 H 0.006 0.994 33 H 0.051 0.949 34 H 0.260 0.740 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.081 0.919 41 H 0.028 0.972 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.029 0.971 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.353 -2.686 -3.167 7.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.223 6.223 3 C 0.052 3.948 4 C -0.148 4.148 5 C -0.093 4.093 6 C -0.136 4.136 7 C 0.352 3.648 8 O -0.468 6.468 9 N -0.311 5.311 10 C 0.141 3.859 11 C -0.522 4.522 12 H 0.051 0.949 13 C -0.166 4.166 14 N -0.560 5.560 15 Si 0.761 3.239 16 H -0.207 1.207 17 H -0.203 1.203 18 H -0.208 1.208 19 C -0.003 4.003 20 C -0.151 4.151 21 C -0.062 4.062 22 N -0.290 5.290 23 C -0.126 4.126 24 C -0.123 4.123 25 N -0.082 5.082 26 C -0.163 4.163 27 H 0.080 0.920 28 H 0.153 0.847 29 H 0.076 0.924 30 H 0.196 0.804 31 H 0.178 0.822 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.048 0.952 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.642 -2.401 -3.374 7.827 hybrid contribution -1.308 0.050 1.238 1.802 sum 5.334 -2.351 -2.136 6.208 Atomic orbital electron populations 1.23429 0.76190 1.06163 1.02187 1.85988 1.23489 1.25190 1.87635 1.20510 0.93763 0.85745 0.94810 1.21063 0.91308 0.98873 1.03594 1.22042 1.02030 0.90682 0.94497 1.21146 0.90440 0.94419 1.07633 1.18108 0.85477 0.84608 0.76564 1.90638 1.14465 1.87196 1.54515 1.48189 1.10964 1.05191 1.66787 1.19381 0.73617 0.96431 0.96476 1.21177 0.91838 1.47046 0.92163 0.94871 1.25217 0.97719 0.95668 0.97951 1.70012 1.07715 1.51990 1.26272 0.85960 0.78425 0.78048 0.81515 1.20665 1.20336 1.20797 1.21395 0.98255 0.83180 0.97511 1.21735 0.99897 0.96860 0.96614 1.21956 0.99244 0.94519 0.90470 1.61957 1.22519 1.33224 1.11253 1.22442 0.92251 1.00751 0.97192 1.22425 0.97384 0.89507 1.02935 1.68523 1.09923 1.25825 1.03893 1.23287 1.01236 0.87146 1.04667 0.92019 0.84730 0.92442 0.80405 0.82221 0.97632 0.93105 0.93033 0.90427 0.90932 0.92760 0.92663 0.94162 0.90053 0.95334 0.90028 0.92322 0.90896 0.90234 0.95230 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.82 113.37 1.11 1.40 16 2 O -0.31 -8.13 10.50 -90.46 -0.95 -9.08 16 3 C 0.10 3.13 6.72 22.75 0.15 3.29 16 4 C -0.12 -3.49 10.12 22.53 0.23 -3.26 16 5 C -0.07 -2.41 9.62 22.59 0.22 -2.19 16 6 C 0.00 0.05 6.55 41.86 0.27 0.33 16 7 C 0.56 25.53 7.60 86.81 0.66 26.19 16 8 O -0.59 -27.01 15.97 -3.87 -0.06 -27.08 16 9 N -0.58 -26.30 2.47 -829.50 -2.05 -28.35 16 10 C 0.26 13.13 4.74 85.63 0.41 13.54 16 11 C -0.48 -25.72 7.42 25.60 0.19 -25.53 16 12 H 0.03 1.85 7.81 -2.91 -0.02 1.83 16 13 C 0.03 1.75 5.46 84.65 0.46 2.21 16 14 N -0.92 -50.33 13.29 21.45 0.28 -50.04 16 15 Si 0.93 42.45 29.54 68.60 2.03 44.47 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 C 0.12 4.57 5.34 86.38 0.46 5.03 16 20 C -0.11 -3.78 5.46 30.59 0.17 -3.61 16 21 C 0.07 1.82 4.96 86.30 0.43 2.25 16 22 N -0.57 -14.45 5.02 -948.85 -4.76 -19.21 16 23 C 0.02 0.51 9.32 127.69 1.19 1.71 16 24 C 0.03 0.49 9.57 127.69 1.22 1.71 16 25 N -0.37 -16.44 4.76 -184.53 -0.88 -17.31 16 26 C 0.00 -0.06 10.21 85.00 0.87 0.80 16 27 H 0.06 1.26 7.68 -2.39 -0.02 1.24 16 28 H 0.13 1.75 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.21 7.67 -2.38 -0.02 1.19 16 30 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.16 4.82 7.65 -2.91 -0.02 4.80 16 32 H 0.01 0.30 8.03 -2.39 -0.02 0.28 16 33 H 0.05 2.74 5.74 -2.39 -0.01 2.72 16 34 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 35 H 0.08 2.91 8.07 -2.39 -0.02 2.89 16 36 H 0.07 2.73 7.50 -2.39 -0.02 2.71 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.05 1.95 6.56 -2.39 -0.02 1.94 16 39 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 40 H 0.08 2.10 8.06 -2.39 -0.02 2.09 16 41 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 1.61 8.12 -2.38 -0.02 1.59 16 43 H 0.06 1.56 6.47 -2.39 -0.02 1.54 16 44 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 45 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 46 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.16 5.75 6.31 -2.91 -0.02 5.73 16 Total: -1.00 -65.48 384.75 2.60 -62.88 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.95 Total: 19.86 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 8.04 Total: 23.86 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -7.40 Total: -114.92 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -1.01 Total: -36.16 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -65.48 2.60 -62.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360312607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.165 kcal (2) G-P(sol) polarization free energy of solvation -65.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds