Wall clock time and date at job start Tue Mar 31 2020 12:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46863 * 124.33390 * 2 1 4 4 C 1.54480 * 105.42276 * 197.02133 * 3 2 1 5 5 H 1.08998 * 110.96722 * 216.44121 * 4 3 2 6 6 C 1.50699 * 110.96797 * 92.71993 * 4 3 2 7 7 O 1.21282 * 120.00081 * 3.08672 * 6 4 3 8 8 N 1.34776 * 119.99973 * 183.08852 * 6 4 3 9 9 C 1.46502 * 119.99909 * 179.97438 * 8 6 4 10 10 C 1.53578 * 112.24510 * 297.64713 * 9 8 6 11 11 C 1.55380 * 106.21748 * 237.63511 * 10 9 8 12 12 C 1.54760 * 104.40971 * 335.76772 * 11 10 9 13 13 C 1.54772 * 103.21296 * 37.35100 * 12 11 10 14 14 H 1.09001 * 112.62193 * 85.33054 * 13 12 11 15 15 N 1.46981 * 108.68663 * 209.79225 * 13 12 11 16 16 C 1.36939 * 125.57911 * 294.15820 * 15 13 12 17 17 H 1.07998 * 120.00118 * 10.50279 * 16 15 13 18 18 C 1.38808 * 119.99850 * 190.50358 * 16 15 13 19 19 N 1.31617 * 120.00485 * 9.21195 * 18 16 15 20 20 Si 1.86802 * 119.99941 * 189.21908 * 18 16 15 21 21 H 1.48505 * 109.46967 * 265.01533 * 20 18 16 22 22 H 1.48497 * 109.47166 * 25.01396 * 20 18 16 23 23 H 1.48500 * 109.47538 * 145.01249 * 20 18 16 24 24 C 1.47366 * 108.84176 * 113.89045 * 15 13 12 25 25 C 1.54865 * 104.82274 * 335.54510 * 24 15 13 26 26 C 1.54628 * 101.80005 * 334.58115 * 4 3 2 27 27 C 1.34413 * 124.35340 * 180.02562 * 2 1 3 28 28 O 1.21283 * 124.94360 * 359.62391 * 27 2 1 29 29 H 1.09003 * 109.46320 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47318 * 299.96978 * 1 2 3 31 31 H 1.08991 * 109.47299 * 59.97475 * 1 2 3 32 32 H 1.09001 * 110.25738 * 78.04154 * 3 2 1 33 33 H 1.08998 * 110.28316 * 316.01527 * 3 2 1 34 34 H 0.96996 * 119.99933 * 0.02562 * 8 6 4 35 35 H 1.09001 * 110.01735 * 357.54827 * 10 9 8 36 36 H 1.09000 * 110.01808 * 118.93738 * 10 9 8 37 37 H 1.09001 * 110.76264 * 216.81938 * 11 10 9 38 38 H 1.08991 * 110.08760 * 94.38046 * 11 10 9 39 39 H 1.08996 * 110.67073 * 278.91584 * 12 11 10 40 40 H 1.09002 * 110.81071 * 155.84673 * 12 11 10 41 41 H 0.97001 * 120.00583 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.37297 * 94.38016 * 24 15 13 43 43 H 1.09000 * 110.37303 * 216.71151 * 24 15 13 44 44 H 1.09001 * 110.97189 * 155.18721 * 25 24 15 45 45 H 1.08997 * 110.96951 * 278.94985 * 25 24 15 46 46 H 1.08997 * 110.48480 * 143.49295 * 26 4 3 47 47 H 1.09001 * 110.48202 * 266.00298 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2934 1.2127 0.0000 4 6 3.7009 0.7489 -0.4359 5 1 4.4757 1.3011 0.0959 6 6 3.8748 0.8817 -1.9269 7 8 2.9873 1.3605 -2.6007 8 7 5.0166 0.4685 -2.5117 9 6 5.1854 0.5971 -3.9613 10 6 4.1545 -0.2309 -4.7424 11 6 4.9690 -1.1971 -5.6465 12 6 6.3365 -0.4952 -5.8264 13 6 6.5900 0.1460 -4.4407 14 1 7.0554 -0.5449 -3.7378 15 7 7.3947 1.3622 -4.6248 16 6 8.6868 1.4018 -5.0767 17 1 9.1415 0.5141 -5.4907 18 6 9.4120 2.5831 -5.0025 19 7 8.9289 3.6114 -4.3380 20 14 11.0735 2.7135 -5.8461 21 1 12.1497 2.4061 -4.8700 22 1 11.1347 1.7462 -6.9712 23 1 11.2572 4.0916 -6.3678 24 6 6.5813 2.5323 -4.2495 25 6 5.1145 2.0708 -4.4337 26 6 3.6899 -0.7376 -0.0103 27 6 2.2236 -1.1097 -0.0005 28 8 1.7948 -2.2442 0.0055 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 2.3313 1.6439 1.0004 33 1 1.8991 1.9397 -0.7100 34 1 5.7263 0.0852 -1.9729 35 1 3.5231 -0.7890 -4.0511 36 1 3.5419 0.4241 -5.3619 37 1 4.4784 -1.3299 -6.6107 38 1 5.0960 -2.1582 -5.1483 39 1 6.2772 0.2706 -6.5997 40 1 7.1156 -1.2199 -6.0632 41 1 9.4359 4.4367 -4.2859 42 1 6.7655 2.8051 -3.2104 43 1 6.7998 3.3732 -4.9078 44 1 4.4409 2.6506 -3.8027 45 1 4.8151 2.1310 -5.4800 46 1 4.2327 -1.3457 -0.7340 47 1 4.1218 -0.8530 0.9838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990975721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:03 Heat of formation + Delta-G solvation = -38.809592 kcal Electronic energy + Delta-G solvation = -28819.461001 eV Core-core repulsion = 25002.695071 eV Total energy + Delta-G solvation = -3816.765931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.05534 -39.82654 -38.14010 -36.25791 -34.26587 -33.68036 -32.87804 -31.44601 -29.78457 -27.90110 -27.15316 -26.72971 -25.96030 -23.86393 -23.37842 -21.01897 -20.06281 -19.77583 -19.46475 -18.83209 -17.58087 -17.04157 -16.85502 -15.90756 -15.66254 -15.57299 -14.98513 -14.76961 -14.27853 -14.15530 -13.79215 -13.70904 -13.55193 -13.22287 -12.92482 -12.76694 -12.51494 -12.33692 -12.22213 -11.99839 -11.85490 -11.70350 -11.65465 -11.22836 -11.06908 -10.78792 -10.71003 -10.56784 -10.21205 -10.18532 -10.00893 -9.91616 -9.82792 -9.67741 -9.43538 -8.90821 -8.67373 -8.57384 -6.84820 -5.77998 -3.11623 2.40951 2.70185 2.84709 3.24725 3.36508 3.43240 3.44676 4.05772 4.13724 4.44914 4.53093 4.68259 4.88862 5.07923 5.10546 5.10978 5.14614 5.28875 5.31993 5.38340 5.47823 5.51374 5.55244 5.57240 5.62234 5.76378 5.82177 5.94540 6.04073 6.10722 6.21905 6.28082 6.31614 6.38106 6.48423 6.55142 6.71687 6.74125 6.89792 6.94272 7.08112 7.50066 7.56884 7.72108 7.77232 7.98617 8.22048 8.38910 9.15554 9.77702 10.44566 11.34288 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.003467 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.895242 B = 8075.290068 C = 8542.571334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.618 5.618 3 C 0.117 3.883 4 C -0.128 4.128 5 H 0.127 0.873 6 C 0.521 3.479 7 O -0.531 6.531 8 N -0.700 5.700 9 C 0.161 3.839 10 C -0.110 4.110 11 C -0.124 4.124 12 C -0.129 4.129 13 C 0.163 3.837 14 H 0.047 0.953 15 N -0.595 5.595 16 C -0.228 4.228 17 H 0.075 0.925 18 C -0.005 4.005 19 N -0.916 5.916 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.280 1.280 23 H -0.291 1.291 24 C 0.175 3.825 25 C -0.144 4.144 26 C -0.146 4.146 27 C 0.518 3.482 28 O -0.536 6.536 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.400 0.600 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.445 -5.344 8.743 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.352 5.352 3 C -0.006 4.006 4 C -0.150 4.150 5 H 0.145 0.855 6 C 0.306 3.694 7 O -0.408 6.408 8 N -0.349 5.349 9 C 0.075 3.925 10 C -0.149 4.149 11 C -0.163 4.163 12 C -0.169 4.169 13 C 0.054 3.946 14 H 0.065 0.935 15 N -0.319 5.319 16 C -0.356 4.356 17 H 0.093 0.907 18 C -0.202 4.202 19 N -0.563 5.563 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.206 1.206 23 H -0.217 1.217 24 C 0.050 3.950 25 C -0.183 4.183 26 C -0.186 4.186 27 C 0.305 3.695 28 O -0.413 6.413 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.235 0.765 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.126 0.874 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.212 -5.397 8.239 16.480 hybrid contribution 1.344 0.110 -0.071 1.350 sum -11.868 -5.287 8.168 15.347 Atomic orbital electron populations 1.21549 0.77914 1.03589 1.01654 1.48092 1.06681 1.07279 1.73148 1.22027 0.88542 0.87869 1.02179 1.22362 0.99815 0.97727 0.95097 0.85501 1.20032 0.82395 0.78017 0.88976 1.90685 1.41198 1.44189 1.64706 1.45843 1.17652 1.62873 1.08579 1.21639 0.95595 0.97037 0.78248 1.22464 0.96884 0.97678 0.97919 1.22550 0.96744 0.98076 0.98895 1.22907 0.95046 0.99455 0.99466 1.21774 0.88425 0.90310 0.94059 0.93514 1.44495 1.10706 0.99549 1.77139 1.18977 0.87039 0.96739 1.32833 0.90674 1.24814 0.98325 0.96890 1.00178 1.69962 1.38402 1.03757 1.44174 0.86164 0.83736 0.77053 0.79164 1.21685 1.20594 1.21680 1.21403 0.84182 0.90779 0.98597 1.23335 1.00393 0.94184 1.00391 1.22366 0.95516 0.95356 1.05405 1.20803 0.89166 0.84418 0.75070 1.90721 1.78617 1.21086 1.50864 0.90083 0.92074 0.91758 0.90236 0.88214 0.76507 0.92344 0.91280 0.92226 0.92347 0.90800 0.92236 0.93752 0.95782 0.91417 0.91200 0.91469 0.87437 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 11.14 59.85 0.67 1.52 16 2 N -0.62 -6.72 3.34 -180.21 -0.60 -7.32 16 3 C 0.12 1.06 6.71 -3.07 -0.02 1.04 16 4 C -0.13 -1.21 3.54 -90.14 -0.32 -1.53 16 5 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 6 C 0.52 7.14 6.32 -10.99 -0.07 7.07 16 7 O -0.53 -8.89 13.33 5.56 0.07 -8.81 16 8 N -0.70 -10.06 5.04 -45.36 -0.23 -10.29 16 9 C 0.16 2.74 0.75 -129.38 -0.10 2.64 16 10 C -0.11 -1.75 5.39 -25.17 -0.14 -1.89 16 11 C -0.12 -1.83 6.86 -24.54 -0.17 -2.00 16 12 C -0.13 -2.25 6.22 -24.87 -0.15 -2.40 16 13 C 0.16 3.11 3.67 -65.61 -0.24 2.87 16 14 H 0.05 0.89 7.97 -51.93 -0.41 0.47 16 15 N -0.59 -14.11 3.03 -161.15 -0.49 -14.60 16 16 C -0.23 -6.00 9.97 -15.06 -0.15 -6.15 16 17 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 18 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 19 N -0.92 -25.99 10.69 55.49 0.59 -25.40 16 20 Si 0.91 21.44 29.56 -169.99 -5.03 16.41 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.18 4.09 5.42 -2.59 -0.01 4.08 16 25 C -0.14 -2.78 5.70 -24.74 -0.14 -2.92 16 26 C -0.15 -1.36 6.40 -26.74 -0.17 -1.53 16 27 C 0.52 6.61 8.02 -10.86 -0.09 6.52 16 28 O -0.54 -8.84 17.35 5.55 0.10 -8.75 16 29 H 0.08 0.80 7.53 -51.93 -0.39 0.41 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 1.04 6.98 -51.93 -0.36 0.67 16 34 H 0.40 5.04 8.50 -40.82 -0.35 4.69 16 35 H 0.06 0.94 7.61 -51.93 -0.39 0.54 16 36 H 0.07 1.14 7.38 -51.93 -0.38 0.75 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.02 0.61 8.07 -51.93 -0.42 0.19 16 43 H 0.07 1.79 6.93 -51.93 -0.36 1.43 16 44 H 0.07 1.36 6.53 -51.93 -0.34 1.02 16 45 H 0.07 1.30 7.63 -51.93 -0.40 0.91 16 46 H 0.11 1.04 7.75 -51.93 -0.40 0.63 16 47 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -33.16 367.43 -8.80 -41.96 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.56 Total: 4.20 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -1.20 Total: 7.06 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.72 Total: -57.61 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.17 Total: -17.56 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.16 -8.80 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990975721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.148 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds