Wall clock time and date at job start Tue Mar 31 2020 12:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45731 * 117.93712 * 2 1 4 4 C 1.52913 * 110.56108 * 161.16100 * 3 2 1 5 5 C 1.53346 * 108.67518 * 50.53012 * 4 3 2 6 6 H 1.09001 * 109.70473 * 52.22477 * 5 4 3 7 7 C 1.50696 * 109.67567 * 172.74217 * 5 4 3 8 8 O 1.21281 * 120.00274 * 358.96516 * 7 5 4 9 9 N 1.34778 * 119.99892 * 178.97251 * 7 5 4 10 10 C 1.46503 * 119.99991 * 179.97438 * 9 7 5 11 11 H 1.09004 * 110.56156 * 32.09563 * 10 9 7 12 12 C 1.54852 * 110.62591 * 269.01884 * 10 9 7 13 13 C 1.55837 * 103.45049 * 241.50977 * 12 10 9 14 14 H 1.09001 * 116.13046 * 159.14856 * 13 12 10 15 15 C 1.55846 * 105.06507 * 288.17797 * 13 12 10 16 16 C 1.54852 * 103.44589 * 71.81868 * 15 13 12 17 17 C 1.55837 * 103.44751 * 0.02562 * 16 15 13 18 18 H 1.09006 * 115.56264 * 159.56222 * 17 16 15 19 19 N 1.50241 * 101.04816 * 32.93751 * 13 12 10 20 20 C 1.36936 * 130.84137 * 126.05414 * 19 13 12 21 21 H 1.07997 * 120.00591 * 179.97438 * 20 19 13 22 22 C 1.38822 * 119.99487 * 359.97420 * 20 19 13 23 23 N 1.31612 * 120.00299 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99517 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47399 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46977 * 119.99868 * 24 22 20 27 27 H 1.48493 * 109.47233 * 239.99660 * 24 22 20 28 28 C 1.53070 * 108.42327 * 292.47483 * 5 4 3 29 29 C 1.33356 * 117.94576 * 179.74200 * 2 1 3 30 30 O 1.21283 * 118.24896 * 2.20467 * 29 2 1 31 31 H 1.09010 * 109.46821 * 180.25511 * 1 2 3 32 32 H 1.09004 * 109.47014 * 300.25360 * 1 2 3 33 33 H 1.08993 * 109.46992 * 60.25739 * 1 2 3 34 34 H 1.09001 * 109.44578 * 40.70742 * 3 2 1 35 35 H 1.09004 * 108.92387 * 281.27761 * 3 2 1 36 36 H 1.09000 * 109.60019 * 290.77952 * 4 3 2 37 37 H 1.09000 * 109.61024 * 170.29251 * 4 3 2 38 38 H 0.96999 * 120.00401 * 359.97438 * 9 7 5 39 39 H 1.09002 * 110.62520 * 0.02562 * 12 10 9 40 40 H 1.09007 * 110.62291 * 123.01433 * 12 10 9 41 41 H 1.09003 * 110.62180 * 313.33093 * 15 13 12 42 42 H 1.08998 * 110.76610 * 190.37890 * 15 13 12 43 43 H 1.09004 * 110.62880 * 241.51165 * 16 15 13 44 44 H 1.09000 * 110.75892 * 118.55768 * 16 15 13 45 45 H 0.96999 * 120.00126 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.40191 * 288.76368 * 28 5 4 47 47 H 1.09011 * 109.33128 * 168.98254 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1477 1.2875 0.0000 4 6 3.5964 1.1271 0.4623 5 6 4.2477 -0.0017 -0.3459 6 1 4.1032 0.1784 -1.4111 7 6 5.7214 -0.0621 -0.0368 8 8 6.2115 0.7317 0.7381 9 7 6.4948 -0.9981 -0.6218 10 6 7.9276 -1.0564 -0.3218 11 1 8.1174 -0.7375 0.7031 12 6 8.7303 -0.1906 -1.3238 13 6 9.6590 -1.2226 -2.0317 14 1 10.0577 -0.9236 -3.0011 15 6 10.7203 -1.6145 -0.9599 16 6 9.9175 -2.4803 0.0420 17 6 8.4807 -2.4942 -0.5611 18 1 7.8374 -3.3076 -0.2253 19 7 8.7846 -2.4444 -2.0313 20 6 8.3876 -3.2617 -3.0557 21 1 7.7463 -4.1071 -2.8546 22 6 8.8093 -3.0036 -4.3529 23 7 9.5904 -1.9731 -4.5982 24 14 8.2671 -4.1182 -5.7504 25 1 7.3981 -5.1967 -5.2148 26 1 7.5109 -3.3241 -6.7519 27 1 9.4615 -4.7200 -6.3955 28 6 3.5840 -1.3237 0.0479 29 6 2.0899 -1.1780 0.0053 30 8 1.4158 -2.1856 -0.0313 31 1 -0.3633 -1.0278 0.0046 32 1 -0.3633 0.5178 0.8877 33 1 -0.3633 0.5098 -0.8922 34 1 1.6294 1.9731 0.6703 35 1 2.1352 1.6943 -1.0112 36 1 3.6162 0.8759 1.5228 37 1 4.1392 2.0573 0.2943 38 1 6.1028 -1.6332 -1.2414 39 1 8.0624 0.2825 -2.0436 40 1 9.3207 0.5589 -0.7965 41 1 11.1159 -0.7256 -0.4684 42 1 11.5267 -2.1945 -1.4086 43 1 9.9150 -2.0209 1.0305 44 1 10.3230 -3.4909 0.0906 45 1 9.8848 -1.7925 -5.5046 46 1 3.8926 -1.5973 1.0569 47 1 3.8918 -2.1036 -0.6488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097355285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:43 Heat of formation + Delta-G solvation = -28.995867 kcal Electronic energy + Delta-G solvation = -28317.477422 eV Core-core repulsion = 24501.137046 eV Total energy + Delta-G solvation = -3816.340376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.89349 -39.72697 -38.51785 -36.45609 -34.25121 -33.80026 -32.54478 -30.02611 -29.14815 -28.89101 -28.09317 -27.16752 -24.85252 -24.25196 -23.20372 -21.22829 -19.91948 -19.73482 -18.90407 -18.66819 -17.24352 -17.02042 -16.80674 -16.42430 -15.89827 -15.61335 -14.98407 -14.83128 -14.48378 -14.11959 -14.01234 -13.62308 -13.52262 -13.34830 -12.97496 -12.83516 -12.48671 -12.08010 -11.98337 -11.93646 -11.78672 -11.30263 -11.19782 -11.16934 -11.15005 -10.96302 -10.93845 -10.55424 -10.38687 -10.21080 -10.10157 -9.93733 -9.60011 -9.25713 -9.15720 -9.00209 -8.98385 -8.50726 -6.98584 -5.78337 -3.17480 2.44708 2.76249 2.85379 3.34094 3.40367 3.42323 3.46630 4.28980 4.37740 4.39030 4.55182 4.57368 4.99686 5.02596 5.06920 5.09046 5.16338 5.26169 5.31185 5.35876 5.49044 5.56290 5.61919 5.64940 5.67045 5.76630 5.85100 5.95072 6.02376 6.07635 6.11500 6.11922 6.27420 6.39130 6.45735 6.57669 6.71131 6.79318 6.92009 7.07562 7.18500 7.28493 7.44704 7.75576 7.92752 7.94814 8.13435 8.52908 9.03720 9.67042 10.47624 11.30675 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.003801 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.829811 B = 7364.468326 C = 8630.697319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.113 3.887 4 C -0.114 4.114 5 C -0.113 4.113 6 H 0.105 0.895 7 C 0.516 3.484 8 O -0.550 6.550 9 N -0.702 5.702 10 C 0.127 3.873 11 H 0.080 0.920 12 C -0.142 4.142 13 C 0.154 3.846 14 H 0.153 0.847 15 C -0.139 4.139 16 C -0.128 4.128 17 C 0.125 3.875 18 H 0.088 0.912 19 N -0.590 5.590 20 C -0.215 4.215 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.125 4.125 29 C 0.522 3.478 30 O -0.553 6.553 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.403 0.597 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.253 0.747 46 H 0.105 0.895 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.603 6.960 9.535 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.343 5.343 3 C -0.009 4.009 4 C -0.152 4.152 5 C -0.135 4.135 6 H 0.123 0.877 7 C 0.301 3.699 8 O -0.428 6.428 9 N -0.351 5.351 10 C 0.021 3.979 11 H 0.098 0.902 12 C -0.182 4.182 13 C 0.047 3.953 14 H 0.170 0.830 15 C -0.178 4.178 16 C -0.168 4.168 17 C 0.016 3.984 18 H 0.106 0.894 19 N -0.311 5.311 20 C -0.343 4.343 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.745 3.255 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.165 4.165 29 C 0.311 3.689 30 O -0.432 6.432 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.238 0.762 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.124 0.876 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.581 6.876 9.729 16.615 hybrid contribution -0.373 -0.733 -1.053 1.336 sum -11.954 6.143 8.676 15.997 Atomic orbital electron populations 1.21771 0.79650 1.04707 1.01247 1.47233 1.07552 1.06248 1.73241 1.21484 0.93134 0.84329 1.02001 1.21701 0.93283 0.99698 1.00536 1.21468 0.93034 0.96148 1.02824 0.87710 1.20237 0.87843 0.81084 0.80721 1.90667 1.75222 1.40597 1.36328 1.46055 1.09682 1.33481 1.45888 1.22672 0.78494 0.98557 0.98182 0.90191 1.23432 0.99224 0.97907 0.97638 1.23759 0.88395 0.85121 0.98026 0.83010 1.23068 0.99032 0.97993 0.97752 1.22885 0.97127 0.99630 0.97191 1.23165 0.94570 0.93396 0.87253 0.89414 1.46531 1.55227 1.29286 1.00059 1.19058 1.24521 1.05298 0.85389 0.90310 1.24694 1.00194 0.98459 0.97156 1.69465 1.38757 1.29124 1.19336 0.86010 0.77729 0.79576 0.82232 1.20546 1.21832 1.21806 1.21655 0.90832 0.98320 1.05655 1.20045 0.90680 0.82780 0.75408 1.90711 1.66142 1.35776 1.50538 0.89023 0.92247 0.92170 0.90177 0.91333 0.90289 0.88493 0.76183 0.92255 0.92846 0.93357 0.92649 0.93035 0.92463 0.93585 0.87633 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 10.48 59.85 0.63 1.20 16 2 N -0.61 -6.06 3.21 -182.87 -0.59 -6.64 16 3 C 0.11 0.86 6.40 -4.50 -0.03 0.83 16 4 C -0.11 -1.07 4.71 -26.60 -0.13 -1.19 16 5 C -0.11 -1.25 2.60 -91.56 -0.24 -1.49 16 6 H 0.10 1.10 8.13 -51.93 -0.42 0.67 16 7 C 0.52 7.62 7.14 -10.99 -0.08 7.54 16 8 O -0.55 -9.73 15.54 5.56 0.09 -9.65 16 9 N -0.70 -11.11 4.98 -51.37 -0.26 -11.37 16 10 C 0.13 2.25 2.80 -65.40 -0.18 2.07 16 11 H 0.08 1.43 7.23 -51.93 -0.38 1.05 16 12 C -0.14 -2.78 6.23 -24.24 -0.15 -2.93 16 13 C 0.15 3.39 4.72 -62.80 -0.30 3.10 16 14 H 0.15 3.88 5.52 -51.93 -0.29 3.59 16 15 C -0.14 -2.68 6.44 -24.24 -0.16 -2.84 16 16 C -0.13 -2.27 6.44 -24.24 -0.16 -2.43 16 17 C 0.12 2.34 5.06 -62.79 -0.32 2.03 16 18 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 19 N -0.59 -13.54 2.98 -145.81 -0.44 -13.98 16 20 C -0.21 -5.48 10.59 -15.06 -0.16 -5.64 16 21 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.92 -25.26 10.46 55.49 0.58 -24.68 16 24 Si 0.91 21.15 29.55 -169.99 -5.02 16.13 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C -0.12 -1.39 5.18 -28.10 -0.15 -1.53 16 29 C 0.52 6.54 7.47 -11.87 -0.09 6.45 16 30 O -0.55 -8.90 15.95 5.55 0.09 -8.81 16 31 H 0.09 0.94 6.59 -51.92 -0.34 0.59 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 37 H 0.10 0.93 7.89 -51.93 -0.41 0.52 16 38 H 0.40 6.27 8.35 -40.82 -0.34 5.93 16 39 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 40 H 0.05 0.98 7.82 -51.92 -0.41 0.58 16 41 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 46 H 0.11 1.14 8.09 -51.93 -0.42 0.72 16 47 H 0.11 1.22 7.92 -51.92 -0.41 0.81 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -31.34 368.12 -9.16 -40.50 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.56 Total: 8.13 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.59 Total: 4.83 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.70 Total: -56.67 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.17 Total: -18.46 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.34 -9.16 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097355285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.502 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds