Wall clock time and date at job start Tue Mar 31 2020 13:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99851 * 2 1 4 4 H 1.48502 * 109.47114 * 239.99560 * 3 2 1 5 5 H 1.48501 * 109.47403 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46849 * 119.99881 * 3 2 1 7 7 C 1.38806 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00196 * 157.89040 * 7 2 1 9 9 N 1.36937 * 120.00095 * 337.89165 * 7 2 1 10 10 C 1.46507 * 120.00252 * 145.84018 * 9 7 2 11 11 C 1.50699 * 109.47011 * 269.99932 * 10 9 7 12 12 C 1.38230 * 120.00234 * 269.72403 * 11 10 9 13 13 C 1.38236 * 120.00151 * 179.76469 * 12 11 10 14 14 C 1.38235 * 119.99975 * 0.50978 * 13 12 11 15 15 C 1.38236 * 119.99784 * 359.74577 * 14 13 12 16 16 C 1.38237 * 119.99638 * 89.99978 * 11 10 9 17 17 C 1.46504 * 120.00349 * 325.83975 * 9 7 2 18 18 C 1.50699 * 109.47156 * 266.20913 * 17 9 7 19 19 C 1.38229 * 119.99969 * 267.86571 * 18 17 9 20 20 C 1.38239 * 120.00049 * 179.78693 * 19 18 17 21 21 C 1.38238 * 119.99941 * 0.44242 * 20 19 18 22 22 C 1.50699 * 120.00115 * 179.83381 * 21 20 19 23 23 C 1.53776 * 113.61422 * 37.47570 * 22 21 20 24 24 C 1.53787 * 87.08008 * 220.01804 * 23 22 21 25 25 C 1.53778 * 87.07991 * 25.43461 * 24 23 22 26 26 C 1.38244 * 119.99838 * 359.81307 * 21 20 19 27 27 C 1.38232 * 119.99933 * 359.97438 * 26 21 20 28 28 H 0.97001 * 120.00294 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46565 * 30.00015 * 10 9 7 30 30 H 1.09000 * 109.47240 * 150.00069 * 10 9 7 31 31 H 1.07999 * 120.00039 * 0.02562 * 12 11 10 32 32 H 1.07999 * 120.00281 * 180.22884 * 13 12 11 33 33 H 1.08001 * 120.00515 * 179.71998 * 14 13 12 34 34 H 1.08007 * 120.00180 * 179.97438 * 15 14 13 35 35 H 1.08002 * 120.00439 * 359.97438 * 16 11 10 36 36 H 1.09010 * 109.46552 * 26.20710 * 17 9 7 37 37 H 1.08997 * 109.47458 * 146.20681 * 17 9 7 38 38 H 1.08000 * 120.00208 * 359.97438 * 19 18 17 39 39 H 1.07999 * 120.00501 * 180.27521 * 20 19 18 40 40 H 1.09001 * 112.84807 * 168.78576 * 22 21 20 41 41 H 1.08994 * 113.61493 * 334.56861 * 23 22 21 42 42 H 1.08997 * 113.61614 * 105.47313 * 23 22 21 43 43 H 1.08998 * 113.61492 * 270.88436 * 24 23 22 44 44 H 1.08999 * 113.60983 * 139.97835 * 24 23 22 45 45 H 1.09005 * 113.61561 * 220.02004 * 25 24 23 46 46 H 1.09000 * 113.69820 * 89.12706 * 25 24 23 47 47 H 1.07997 * 119.99843 * 180.02562 * 26 21 20 48 48 H 1.07993 * 119.99992 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0307 -1.2367 -0.3515 9 7 1.4010 -2.3442 0.4474 10 6 1.7187 -3.6339 -0.1709 11 6 0.7789 -3.8842 -1.3220 12 6 -0.4143 -4.5484 -1.1083 13 6 -1.2786 -4.7737 -2.1634 14 6 -0.9448 -4.3440 -3.4341 15 6 0.2509 -3.6844 -3.6488 16 6 1.1128 -3.4544 -2.5928 17 6 0.4316 -2.2766 1.5437 18 6 1.1332 -2.5379 2.8515 19 6 1.2009 -3.8235 3.3548 20 6 1.8484 -4.0639 4.5523 21 6 2.4202 -3.0171 5.2511 22 6 3.1227 -3.2786 6.5584 23 6 3.9139 -4.5970 6.5797 24 6 3.4083 -4.7858 8.0198 25 6 2.2137 -3.8980 7.6331 26 6 2.3479 -1.7306 4.7504 27 6 1.7043 -1.4909 3.5508 28 1 -0.4850 0.8400 -0.0004 29 1 2.7453 -3.6183 -0.5367 30 1 1.6082 -4.4279 0.5676 31 1 -0.6733 -4.8877 -0.1162 32 1 -2.2126 -5.2895 -1.9957 33 1 -1.6180 -4.5240 -4.2593 34 1 0.5119 -3.3490 -4.6418 35 1 2.0469 -2.9390 -2.7605 36 1 -0.0225 -1.2858 1.5665 37 1 -0.3431 -3.0279 1.3906 38 1 0.7506 -4.6407 2.8109 39 1 1.9052 -5.0690 4.9433 40 1 3.6934 -2.4196 6.9114 41 1 3.5354 -5.3446 5.8826 42 1 4.9929 -4.4599 6.5102 43 1 4.0582 -4.3398 8.7726 44 1 3.1308 -5.8135 8.2538 45 1 1.9203 -3.1964 8.4141 46 1 1.3696 -4.4531 7.2240 47 1 2.7949 -0.9129 5.2962 48 1 1.6481 -0.4860 3.1595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237109433.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:44 Heat of formation + Delta-G solvation = 82.258698 kcal Electronic energy + Delta-G solvation = -26425.410682 eV Core-core repulsion = 23024.743930 eV Total energy + Delta-G solvation = -3400.666753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.179 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -39.69893 -38.55286 -37.63029 -35.43789 -31.99373 -31.48962 -30.28186 -30.18704 -29.61783 -26.67256 -25.60697 -25.52894 -24.06779 -22.21270 -21.92351 -21.82361 -20.53974 -19.91154 -18.94191 -16.89392 -16.38578 -16.02170 -15.40961 -15.01917 -14.53346 -14.43414 -14.34863 -14.23056 -13.84487 -13.56857 -13.33672 -12.83960 -12.82555 -12.73985 -12.63141 -12.40790 -12.12558 -11.86259 -11.57794 -11.49051 -11.13163 -10.88284 -10.84457 -10.77618 -10.65005 -10.42611 -10.34825 -10.30505 -10.09377 -10.04605 -9.98846 -9.82721 -8.56841 -8.27475 -8.21005 -8.02827 -7.78603 -6.71030 -5.86728 -3.37676 1.95223 2.05414 2.11036 2.14724 3.32759 3.39512 3.41706 4.27572 4.44070 4.55364 4.64466 4.72579 4.73211 5.08777 5.26916 5.32475 5.44754 5.50611 5.53018 5.54287 5.65248 5.66804 5.70109 5.74144 5.76949 5.82635 5.84196 5.92969 5.93817 6.07682 6.12367 6.20185 6.23795 6.29729 6.35177 6.46911 6.52276 6.61803 6.73621 6.75338 6.78316 6.81370 7.11735 7.13499 7.17226 7.18844 7.44071 7.48555 7.63128 7.73293 7.73909 7.76253 8.42168 9.08921 9.71628 10.28357 11.14141 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.003835 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.293610 B = 7298.858805 C = 9060.639973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.014 3.986 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.253 4.253 8 H 0.062 0.938 9 N -0.562 5.562 10 C 0.176 3.824 11 C -0.071 4.071 12 C -0.116 4.116 13 C -0.127 4.127 14 C -0.142 4.142 15 C -0.125 4.125 16 C -0.098 4.098 17 C 0.173 3.827 18 C -0.072 4.072 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.096 4.096 22 C -0.066 4.066 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.132 4.132 26 C -0.122 4.122 27 C -0.095 4.095 28 H 0.256 0.744 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.032 0.968 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.082 0.918 47 H 0.108 0.892 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 -9.111 7.878 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.187 4.187 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.383 4.383 8 H 0.080 0.920 9 N -0.279 5.279 10 C 0.050 3.950 11 C -0.074 4.074 12 C -0.135 4.135 13 C -0.145 4.145 14 C -0.161 4.161 15 C -0.143 4.143 16 C -0.117 4.117 17 C 0.048 3.952 18 C -0.075 4.075 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.096 4.096 22 C -0.085 4.085 23 C -0.172 4.172 24 C -0.182 4.182 25 C -0.169 4.169 26 C -0.140 4.140 27 C -0.114 4.114 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.050 0.950 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.126 0.874 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.233 -8.941 7.862 12.114 hybrid contribution 0.311 1.099 -0.144 1.151 sum 2.544 -7.842 7.719 11.294 Atomic orbital electron populations 1.69977 1.05455 1.25928 1.50690 1.25083 0.94940 0.98567 1.00095 0.86527 0.79325 0.83503 0.78459 1.20679 1.21557 1.20753 1.19022 0.94265 0.85508 1.39487 0.91989 1.43832 1.49470 1.02201 1.32441 1.20052 0.95193 0.89154 0.90636 1.20977 0.96774 0.93807 0.95826 1.20906 0.94584 1.00037 0.97977 1.20949 0.98949 1.01228 0.93366 1.20872 0.97239 1.01249 0.96706 1.21018 0.94959 0.99737 0.98600 1.20954 0.99714 0.98568 0.92436 1.20074 0.89704 1.03819 0.81647 1.21199 0.97034 0.92259 0.97011 1.21007 1.00477 0.96679 0.95910 1.20770 0.99697 0.97763 0.95811 1.19452 1.00585 0.93543 0.96058 1.21412 0.96753 0.97381 0.92923 1.23032 0.99810 0.97620 0.96736 1.22841 0.98267 0.99979 0.97087 1.22982 0.96977 0.98820 0.98111 1.20961 1.00532 0.95763 0.96735 1.21077 0.96973 0.99620 0.93732 0.93360 0.92949 0.93621 0.87297 0.87348 0.87428 0.87282 0.86694 0.87393 0.95003 0.87233 0.87347 0.89200 0.89724 0.91702 0.90465 0.91693 0.91761 0.89942 0.87353 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.22 11.32 55.49 0.63 -23.59 16 2 C 0.01 0.37 4.94 -17.43 -0.09 0.28 16 3 Si 0.89 20.89 29.61 -169.99 -5.03 15.86 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.53 9.49 -15.06 -0.14 -6.67 16 8 H 0.06 1.62 7.92 -52.48 -0.42 1.20 16 9 N -0.56 -13.16 2.42 -175.98 -0.43 -13.59 16 10 C 0.18 3.60 5.81 -5.19 -0.03 3.57 16 11 C -0.07 -1.42 5.46 -104.63 -0.57 -1.99 16 12 C -0.12 -2.16 9.70 -39.59 -0.38 -2.54 16 13 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 14 C -0.14 -2.38 10.05 -39.58 -0.40 -2.78 16 15 C -0.12 -2.21 10.05 -39.58 -0.40 -2.61 16 16 C -0.10 -1.93 9.70 -39.58 -0.38 -2.31 16 17 C 0.17 3.91 5.38 -5.19 -0.03 3.88 16 18 C -0.07 -1.45 5.46 -104.62 -0.57 -2.02 16 19 C -0.12 -2.13 9.61 -39.58 -0.38 -2.51 16 20 C -0.12 -1.90 8.61 -39.58 -0.34 -2.24 16 21 C -0.10 -1.47 5.29 -104.62 -0.55 -2.03 16 22 C -0.07 -0.81 3.98 -90.96 -0.36 -1.17 16 23 C -0.13 -1.46 7.46 -25.92 -0.19 -1.65 16 24 C -0.14 -1.34 8.08 -25.92 -0.21 -1.55 16 25 C -0.13 -1.40 7.55 -25.92 -0.20 -1.60 16 26 C -0.12 -2.08 9.71 -39.58 -0.38 -2.46 16 27 C -0.10 -1.88 9.71 -39.58 -0.38 -2.27 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.05 1.06 7.98 -51.93 -0.41 0.64 16 30 H 0.05 0.86 7.93 -51.93 -0.41 0.45 16 31 H 0.11 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.11 2.77 5.29 -51.92 -0.27 2.50 16 37 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.11 1.44 6.66 -52.49 -0.35 1.09 16 40 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 41 H 0.08 0.94 6.31 -51.93 -0.33 0.61 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.91 7.72 -51.93 -0.40 0.51 16 47 H 0.11 1.64 8.05 -52.49 -0.42 1.22 16 48 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -27.77 392.02 -12.96 -40.73 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.64 Total: 7.91 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -6.39 Total: -33.23 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.20 Total: -37.18 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -27.77 -12.96 -40.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237109433.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.987 kcal (2) G-P(sol) polarization free energy of solvation -27.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds