Wall clock time and date at job start Tue Mar 31 2020 13:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48501 * 109.46932 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46991 * 299.99797 * 3 2 1 6 6 H 1.48502 * 109.46816 * 59.99637 * 3 2 1 7 7 C 1.37881 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.53518 * 114.17149 * 179.97438 * 9 7 2 11 11 N 1.47479 * 87.93523 * 220.13780 * 10 9 7 12 12 C 1.46901 * 111.00083 * 138.70127 * 11 10 9 13 13 C 1.50689 * 109.47037 * 174.08812 * 12 11 10 14 14 C 1.38263 * 120.00233 * 100.68440 * 13 12 11 15 15 C 1.38209 * 119.99912 * 179.97438 * 14 13 12 16 16 C 1.38251 * 120.00617 * 359.97438 * 15 14 13 17 17 C 1.38217 * 119.99821 * 359.81324 * 16 15 14 18 18 C 1.38215 * 120.00274 * 280.70145 * 13 12 11 19 19 C 1.50703 * 119.99750 * 359.97438 * 18 13 12 20 20 C 1.53005 * 109.46905 * 87.13657 * 19 18 13 21 21 C 1.50703 * 109.46905 * 180.02562 * 20 19 18 22 22 C 1.38232 * 119.99600 * 269.72768 * 21 20 19 23 23 C 1.38241 * 119.99596 * 179.76596 * 22 21 20 24 24 C 1.38232 * 120.00028 * 0.50401 * 23 22 21 25 25 C 1.38241 * 120.00153 * 359.75071 * 24 23 22 26 26 C 1.38232 * 120.00161 * 89.99766 * 21 20 19 27 27 C 1.47480 * 87.83570 * 27.01073 * 11 10 9 28 28 H 0.96997 * 119.99554 * 0.02562 * 1 2 3 29 29 H 1.09004 * 113.26027 * 312.94538 * 9 7 2 30 30 H 1.09001 * 113.47408 * 105.36628 * 10 9 7 31 31 H 1.09004 * 113.52741 * 334.91554 * 10 9 7 32 32 H 1.09002 * 109.46672 * 54.08812 * 12 11 10 33 33 H 1.09004 * 109.47048 * 294.09232 * 12 11 10 34 34 H 1.07996 * 119.99531 * 359.97438 * 14 13 12 35 35 H 1.08005 * 119.99618 * 179.97438 * 15 14 13 36 36 H 1.08003 * 120.00343 * 179.97438 * 16 15 14 37 37 H 1.07998 * 120.00141 * 180.23462 * 17 16 15 38 38 H 1.09003 * 109.47218 * 207.13535 * 19 18 13 39 39 H 1.08999 * 109.47056 * 327.13394 * 19 18 13 40 40 H 1.08993 * 109.47209 * 300.00016 * 20 19 18 41 41 H 1.08999 * 109.46984 * 59.99808 * 20 19 18 42 42 H 1.08000 * 120.00626 * 0.02562 * 22 21 20 43 43 H 1.08004 * 119.99983 * 180.23155 * 23 22 21 44 44 H 1.07997 * 120.00482 * 179.71889 * 24 23 22 45 45 H 1.07997 * 120.00050 * 179.97438 * 25 24 23 46 46 H 1.08007 * 119.99991 * 0.02562 * 26 21 20 47 47 H 1.09000 * 113.47684 * 87.75231 * 27 11 10 48 48 H 1.08997 * 113.47896 * 218.22637 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.1496 -3.7439 0.0005 11 7 1.2049 -4.3603 -0.9495 12 6 1.9205 -5.0903 -2.0046 13 6 0.9282 -5.8243 -2.8690 14 6 0.5584 -5.3009 -4.0942 15 6 -0.3513 -5.9744 -4.8873 16 6 -0.8912 -7.1718 -4.4559 17 6 -0.5184 -7.6973 -3.2331 18 6 0.3873 -7.0206 -2.4371 19 6 0.7904 -7.5913 -1.1018 20 6 -0.1085 -7.0122 -0.0074 21 6 0.2950 -7.5823 1.3279 22 6 -0.2935 -8.7449 1.7893 23 6 0.0801 -9.2706 3.0120 24 6 1.0346 -8.6280 3.7780 25 6 1.6193 -7.4624 3.3190 26 6 1.2495 -6.9397 2.0939 27 6 0.8517 -2.9994 -1.3949 28 1 -0.4849 0.8401 -0.0004 29 1 0.4446 -2.5306 0.7333 30 1 2.1889 -4.2510 0.9646 31 1 3.1382 -3.5668 -0.4232 32 1 2.6059 -5.8058 -1.5504 33 1 2.4837 -4.3854 -2.6162 34 1 0.9806 -4.3658 -4.4314 35 1 -0.6404 -5.5653 -5.8441 36 1 -1.6025 -7.6979 -5.0754 37 1 -0.9373 -8.6345 -2.8977 38 1 0.6841 -8.6759 -1.1232 39 1 1.8285 -7.3319 -0.8944 40 1 -0.0023 -5.9276 0.0139 41 1 -1.1467 -7.2715 -0.2150 42 1 -1.0422 -9.2449 1.1926 43 1 -0.3770 -10.1810 3.3709 44 1 1.3232 -9.0361 4.7354 45 1 2.3647 -6.9601 3.9177 46 1 1.7058 -6.0287 1.7356 47 1 1.4937 -2.6228 -2.1912 48 1 -0.2089 -2.8756 -1.6134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237300233.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:08 Heat of formation + Delta-G solvation = 72.571832 kcal Electronic energy + Delta-G solvation = -26630.535195 eV Core-core repulsion = 23229.448388 eV Total energy + Delta-G solvation = -3401.086807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.92170 -38.99119 -38.38397 -34.54754 -32.98950 -31.93126 -31.24112 -30.74525 -28.66150 -27.84327 -25.55998 -24.81554 -24.00278 -22.77427 -22.40626 -21.62593 -20.85323 -19.89458 -18.61302 -16.72601 -16.65856 -16.18748 -15.74396 -15.16339 -14.90455 -14.84137 -14.75005 -14.28549 -14.08919 -13.52910 -13.39719 -13.28029 -13.17847 -12.87270 -12.57008 -12.40629 -12.34489 -11.96243 -11.78746 -11.55306 -11.36618 -11.20278 -11.05782 -11.02232 -10.80261 -10.67563 -10.43064 -10.39002 -10.11477 -9.73718 -9.32168 -8.96305 -8.78771 -8.68752 -8.54131 -8.44285 -8.25770 -7.98012 -6.06962 -4.11459 1.44274 1.53594 1.58757 1.64030 3.26307 3.35053 3.38054 3.87984 3.99674 4.38953 4.82503 4.90584 4.99550 5.05134 5.07649 5.12303 5.20205 5.22587 5.29179 5.32003 5.38917 5.51030 5.62965 5.64642 5.73062 5.78909 5.81977 5.85746 5.87562 6.06817 6.09743 6.16484 6.22643 6.27648 6.32578 6.36869 6.45195 6.58694 6.59233 6.62746 6.67047 6.70276 6.72895 6.76039 6.89469 7.00447 7.14682 7.16208 7.19374 7.23304 7.71243 7.89259 8.04507 8.35602 8.92088 9.53834 11.02467 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.004342 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.843463 B = 6447.366805 C = 9098.365138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.043 3.957 10 C -0.007 4.007 11 N -0.471 5.471 12 C 0.054 3.946 13 C -0.058 4.058 14 C -0.110 4.110 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.122 4.122 18 C -0.064 4.064 19 C -0.064 4.064 20 C -0.090 4.090 21 C -0.068 4.068 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.120 4.120 26 C -0.110 4.110 27 C 0.007 3.993 28 H 0.261 0.739 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.062 0.938 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.129 0.871 47 H 0.052 0.948 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 -17.712 -2.075 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.024 3.976 10 C -0.135 4.135 11 N -0.193 5.193 12 C -0.074 4.074 13 C -0.059 4.059 14 C -0.128 4.128 15 C -0.145 4.145 16 C -0.145 4.145 17 C -0.140 4.140 18 C -0.065 4.065 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.068 4.068 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.138 4.138 26 C -0.128 4.128 27 C -0.122 4.122 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.146 0.854 47 H 0.070 0.930 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.290 -18.081 -1.860 18.179 hybrid contribution 0.977 1.389 -0.529 1.779 sum 0.686 -16.692 -2.389 16.876 Atomic orbital electron populations 1.69978 1.05967 1.26615 1.49642 1.25007 0.94783 0.99110 0.94618 0.86595 0.80191 0.83911 0.77654 1.19742 1.21024 1.20917 1.21059 0.92732 0.90277 1.51358 0.92449 1.20081 0.94186 0.90758 0.92591 1.24044 0.95882 0.97756 0.95821 1.68817 1.26698 1.14034 1.09779 1.21631 0.94157 0.97587 0.94030 1.19676 0.97837 0.94220 0.94154 1.21075 0.97953 0.99410 0.94394 1.21039 0.97940 0.95708 0.99790 1.21017 1.00369 0.96492 0.96604 1.20958 0.98351 0.99986 0.94736 1.19678 0.96579 0.94576 0.95647 1.20453 1.00100 0.98687 0.90863 1.20872 0.98270 1.04391 0.89172 1.20036 0.95747 0.94530 0.96509 1.21064 1.00458 0.96307 0.96392 1.21065 0.98183 0.99894 0.95136 1.21074 0.97899 0.96361 0.99774 1.21182 0.99999 0.96170 0.96410 1.21293 0.97218 1.00047 0.94268 1.24077 1.00203 0.86649 1.01225 0.92933 0.91859 0.92044 0.92833 0.90853 0.93583 0.86387 0.86575 0.86670 0.86594 0.92168 0.91005 0.86441 0.91950 0.86565 0.86667 0.86668 0.86297 0.85355 0.92960 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.18 13.26 55.43 0.74 -24.44 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -13.65 8.83 -34.44 -0.30 -13.96 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.04 1.03 3.76 -91.24 -0.34 0.68 16 10 C -0.01 -0.13 7.27 -7.54 -0.05 -0.18 16 11 N -0.47 -8.67 4.07 -246.08 -1.00 -9.67 16 12 C 0.05 0.87 4.27 -4.98 -0.02 0.85 16 13 C -0.06 -0.89 5.43 -104.63 -0.57 -1.46 16 14 C -0.11 -1.62 9.67 -39.58 -0.38 -2.00 16 15 C -0.13 -1.66 10.05 -39.59 -0.40 -2.05 16 16 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16 17 C -0.12 -1.56 9.69 -39.58 -0.38 -1.94 16 18 C -0.06 -0.90 5.13 -104.62 -0.54 -1.44 16 19 C -0.06 -0.83 4.87 -27.88 -0.14 -0.97 16 20 C -0.09 -1.26 5.33 -27.88 -0.15 -1.41 16 21 C -0.07 -0.93 5.13 -104.62 -0.54 -1.46 16 22 C -0.12 -1.51 9.70 -39.58 -0.38 -1.90 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 24 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 25 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 26 C -0.11 -1.54 9.70 -39.59 -0.38 -1.92 16 27 C 0.01 0.16 7.25 -7.54 -0.05 0.10 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.06 1.69 8.11 -51.93 -0.42 1.27 16 30 H 0.06 1.12 6.62 -51.93 -0.34 0.77 16 31 H 0.05 1.04 7.87 -51.93 -0.41 0.63 16 32 H 0.07 1.09 6.45 -51.93 -0.33 0.76 16 33 H 0.05 0.76 7.23 -51.93 -0.38 0.38 16 34 H 0.12 1.69 8.03 -52.49 -0.42 1.27 16 35 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 39 H 0.07 0.97 6.25 -51.93 -0.32 0.64 16 40 H 0.12 1.95 5.68 -51.93 -0.30 1.66 16 41 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.13 1.87 6.54 -52.48 -0.34 1.52 16 47 H 0.05 1.16 7.42 -51.93 -0.39 0.78 16 48 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -27.99 386.96 -13.20 -41.19 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.42 Total: 6.23 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: -6.32 Total: -34.90 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: -0.27 Total: -34.11 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -27.99 -13.20 -41.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237300233.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.763 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds