Wall clock time and date at job start Tue Mar 31 2020 12:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00259 * 2 1 4 4 C 1.53002 * 109.47382 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46861 * 64.57401 * 4 3 2 6 6 C 1.36982 * 119.99394 * 264.53062 * 5 4 3 7 7 H 1.07998 * 119.99814 * 125.39925 * 6 5 4 8 8 C 1.38975 * 120.00095 * 305.39731 * 6 5 4 9 9 N 1.31415 * 120.00264 * 182.84015 * 8 6 5 10 10 Si 1.86805 * 120.00064 * 2.83793 * 8 6 5 11 11 H 1.48507 * 109.46626 * 94.31540 * 10 8 6 12 12 H 1.48502 * 109.47227 * 214.31621 * 10 8 6 13 13 H 1.48493 * 109.47070 * 334.31952 * 10 8 6 14 14 C 1.34775 * 120.00092 * 84.52967 * 5 4 3 15 15 O 1.21627 * 120.00027 * 2.85799 * 14 5 4 16 16 C 1.47357 * 119.99668 * 182.85753 * 14 5 4 17 17 C 1.41321 * 126.42239 * 352.86042 * 16 14 5 18 18 N 1.30446 * 108.02547 * 179.79052 * 17 16 14 19 19 N 1.39935 * 108.91437 * 0.38480 * 18 17 16 20 20 C 1.46496 * 125.74902 * 179.87078 * 19 18 17 21 21 C 1.52998 * 109.47030 * 94.69353 * 20 19 18 22 22 C 1.53006 * 109.47245 * 179.97438 * 21 20 19 23 23 C 1.52996 * 109.46950 * 299.99733 * 22 21 20 24 24 C 1.52998 * 109.46929 * 60.00073 * 23 22 21 25 25 C 1.52996 * 109.47053 * 214.69018 * 20 19 18 26 26 C 1.34284 * 108.49493 * 359.60628 * 19 18 17 27 27 H 1.08994 * 109.46808 * 300.00194 * 1 2 3 28 28 H 1.09001 * 109.47062 * 59.99909 * 1 2 3 29 29 H 1.08994 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47023 * 59.99863 * 3 2 1 31 31 H 1.09001 * 109.47481 * 300.00557 * 3 2 1 32 32 H 1.08996 * 109.46947 * 304.56918 * 4 3 2 33 33 H 1.08999 * 109.46977 * 184.56807 * 4 3 2 34 34 H 0.96993 * 120.00109 * 179.97438 * 9 8 6 35 35 H 1.08001 * 125.98511 * 0.03857 * 17 16 14 36 36 H 1.09002 * 109.47270 * 334.69454 * 20 19 18 37 37 H 1.09003 * 109.47270 * 59.99461 * 21 20 19 38 38 H 1.09004 * 109.47069 * 299.99949 * 21 20 19 39 39 H 1.08992 * 109.47108 * 59.99948 * 22 21 20 40 40 H 1.08999 * 109.46854 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.47508 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47439 * 300.00133 * 23 22 21 43 43 H 1.08995 * 109.47816 * 60.00000 * 24 23 22 44 44 H 1.09008 * 109.46908 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.47398 * 60.00465 * 25 20 19 46 46 H 1.09002 * 109.47439 * 300.00333 * 25 20 19 47 47 H 1.08008 * 126.29347 * 180.20400 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9760 0.5546 -1.2466 6 6 4.2049 -0.7953 -1.2882 7 1 3.7040 -1.4054 -2.0252 8 6 5.0819 -1.3797 -0.3822 9 7 5.3445 -2.6651 -0.4575 10 14 5.8874 -0.3379 0.9427 11 1 5.0844 -0.4153 2.1896 12 1 7.2587 -0.8440 1.2048 13 1 5.9593 1.0736 0.4871 14 6 4.1558 1.3032 -2.3528 15 8 4.0029 2.5088 -2.3027 16 6 4.5377 0.6610 -3.6229 17 6 4.8866 -0.6963 -3.8051 18 7 5.1555 -0.8778 -5.0686 19 7 5.0026 0.3381 -5.7441 20 6 5.2152 0.5535 -7.1775 21 6 3.8807 0.4289 -7.9154 22 6 4.1026 0.6545 -9.4123 23 6 4.6809 2.0530 -9.6371 24 6 6.0153 2.1777 -8.8992 25 6 5.7938 1.9518 -7.4027 26 6 4.6225 1.2728 -4.8581 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8513 0.5748 0.8471 33 1 3.9785 2.1771 0.0825 34 1 5.9568 -3.0728 0.1746 35 1 4.9205 -1.4519 -3.0342 36 1 5.9118 -0.1936 -7.5578 37 1 3.1840 1.1759 -7.5350 38 1 3.4684 -0.5673 -7.7549 39 1 4.7993 -0.0923 -9.7929 40 1 3.1519 0.5652 -9.9380 41 1 4.8385 2.2140 -10.7035 42 1 3.9841 2.7998 -9.2564 43 1 6.7122 1.4310 -9.2797 44 1 6.4271 3.1742 -9.0589 45 1 6.7445 2.0407 -6.8771 46 1 5.0971 2.6990 -7.0224 47 1 4.4207 2.3121 -5.0720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348024092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:13 Heat of formation + Delta-G solvation = 1.892143 kcal Electronic energy + Delta-G solvation = -28121.296966 eV Core-core repulsion = 24306.295995 eV Total energy + Delta-G solvation = -3815.000971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.77104 -38.81708 -38.07809 -36.93990 -34.76551 -32.81965 -31.96754 -31.07061 -29.95881 -29.22870 -28.17265 -25.86839 -24.84554 -23.65709 -22.87722 -22.30849 -21.16261 -20.29743 -19.46280 -18.79284 -17.69472 -16.51069 -16.06221 -15.81004 -15.35907 -15.00403 -14.73381 -14.60998 -14.57752 -14.32482 -14.10852 -13.87013 -13.58943 -13.37237 -12.80623 -12.57896 -12.50395 -12.47350 -12.27963 -11.85946 -11.77098 -11.53450 -11.46758 -11.35940 -11.35358 -10.90567 -10.85583 -10.75862 -10.64096 -10.44231 -10.15110 -10.00131 -9.81929 -9.09758 -8.96430 -8.74207 -8.57423 -7.87622 -7.46332 -6.31567 -4.12396 2.29791 2.90856 3.15719 3.21949 3.32135 3.34399 4.22296 4.32721 4.38585 4.47323 4.52850 4.62004 4.66284 4.83068 4.95647 5.03329 5.09871 5.19448 5.21436 5.36695 5.38533 5.56951 5.59645 5.66047 5.68854 5.78007 5.79979 5.82262 5.86742 5.87314 5.94881 5.98680 6.02053 6.03458 6.10205 6.19040 6.21681 6.32587 6.45122 6.51812 6.81065 7.52153 7.55802 7.63720 7.78747 8.20082 8.31758 8.45660 9.08595 9.43043 9.79120 10.74844 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.003695 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.993929 B = 7575.421421 C = 8181.679817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.053 3.947 4 C 0.107 3.893 5 N -0.461 5.461 6 C -0.328 4.328 7 H 0.108 0.892 8 C 0.070 3.930 9 N -0.871 5.871 10 Si 0.882 3.118 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.260 1.260 14 C 0.570 3.430 15 O -0.609 6.609 16 C -0.255 4.255 17 C 0.098 3.902 18 N -0.327 5.327 19 N -0.373 5.373 20 C 0.166 3.834 21 C -0.131 4.131 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.113 4.113 25 C -0.132 4.132 26 C 0.094 3.906 27 H 0.030 0.970 28 H 0.032 0.968 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.275 0.725 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.794 7.376 -12.284 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C -0.025 4.025 4 C -0.016 4.016 5 N -0.181 5.181 6 C -0.456 4.456 7 H 0.125 0.875 8 C -0.137 4.137 9 N -0.506 5.506 10 Si 0.710 3.290 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.185 1.185 14 C 0.361 3.639 15 O -0.495 6.495 16 C -0.270 4.270 17 C -0.088 4.088 18 N -0.146 5.146 19 N -0.152 5.152 20 C 0.064 3.936 21 C -0.169 4.169 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.152 4.152 25 C -0.171 4.171 26 C -0.056 4.056 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.249 0.751 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.272 6.768 -13.173 14.983 hybrid contribution -0.175 1.136 1.571 1.947 sum -2.447 7.904 -11.602 14.250 Atomic orbital electron populations 1.22656 0.82993 1.02046 0.98827 1.88156 1.17739 1.27074 1.95057 1.22936 0.95302 0.84934 0.99299 1.21718 0.91629 0.98641 0.89615 1.43304 1.59607 1.07977 1.07205 1.19003 1.24940 0.81025 1.20628 0.87520 1.25469 0.95045 0.95471 0.97719 1.69629 1.34312 1.10195 1.36510 0.86818 0.78554 0.81624 0.82041 1.20082 1.21728 1.18454 1.17447 0.77783 0.85020 0.83640 1.90591 1.57879 1.14569 1.86491 1.20221 1.18002 0.95098 0.93644 1.26026 0.92245 0.97620 0.92951 1.77243 1.26940 1.02617 1.07820 1.48617 1.52402 1.07135 1.07035 1.21164 0.97880 0.98328 0.76247 1.21990 0.96588 1.03205 0.95158 1.21500 1.01357 0.97230 0.95227 1.21600 0.96974 0.97330 1.00188 1.21474 0.97659 1.02198 0.93827 1.21943 1.02060 0.95557 0.97502 1.22629 0.98084 0.95524 0.89352 0.95116 0.94894 0.90130 0.93991 0.93238 0.91172 0.90067 0.91507 0.75102 0.88330 0.91305 0.90864 0.91588 0.91423 0.91721 0.91712 0.91541 0.91224 0.90762 0.90812 0.81210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.54 10.42 -35.23 -0.37 -7.91 16 3 C 0.05 1.05 6.24 37.16 0.23 1.28 16 4 C 0.11 2.38 3.85 -4.04 -0.02 2.37 16 5 N -0.46 -11.27 2.00 -116.04 -0.23 -11.50 16 6 C -0.33 -8.46 6.54 -14.98 -0.10 -8.56 16 7 H 0.11 2.92 6.12 -52.49 -0.32 2.60 16 8 C 0.07 1.83 5.48 -17.46 -0.10 1.74 16 9 N -0.87 -23.75 13.96 55.50 0.77 -22.98 16 10 Si 0.88 20.80 24.82 -169.99 -4.22 16.58 16 11 H -0.27 -6.30 7.08 56.52 0.40 -5.90 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.26 -6.15 6.42 56.52 0.36 -5.79 16 14 C 0.57 13.90 7.59 -12.55 -0.10 13.81 16 15 O -0.61 -15.39 16.56 5.25 0.09 -15.31 16 16 C -0.26 -5.72 6.02 -105.06 -0.63 -6.35 16 17 C 0.10 2.21 10.24 -16.97 -0.17 2.04 16 18 N -0.33 -6.83 12.50 30.87 0.39 -6.44 16 19 N -0.37 -6.49 3.50 -54.29 -0.19 -6.68 16 20 C 0.17 2.11 3.18 -67.94 -0.22 1.89 16 21 C -0.13 -1.46 5.53 -26.73 -0.15 -1.60 16 22 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 23 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 24 C -0.11 -0.89 5.92 -26.76 -0.16 -1.05 16 25 C -0.13 -1.37 4.83 -26.76 -0.13 -1.50 16 26 C 0.09 1.76 10.40 -16.53 -0.17 1.59 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.59 4.15 -51.93 -0.22 1.38 16 33 H 0.08 1.75 7.50 -51.93 -0.39 1.36 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.23 5.73 4.79 -52.49 -0.25 5.47 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.76 7.13 -51.93 -0.37 0.39 16 47 H 0.17 2.76 7.23 -52.48 -0.38 2.38 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -30.77 370.41 -6.53 -37.31 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.44 Total: 6.27 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.91 Total: 5.08 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.74 Total: -47.60 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.28 Total: -23.21 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.22 Total: 16.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.77 -6.53 -37.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348024092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.197 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds