Wall clock time and date at job start Tue Mar 31 2020 13:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38233 * 120.00073 * 2 1 4 4 C 1.38237 * 120.00148 * 179.78355 * 3 2 1 5 5 C 1.38239 * 119.99692 * 0.44959 * 4 3 2 6 6 C 1.50696 * 119.99925 * 179.82919 * 5 4 3 7 7 H 1.09001 * 110.01982 * 343.33848 * 6 5 4 8 8 C 1.54266 * 110.03250 * 221.89295 * 6 5 4 9 9 C 1.54890 * 104.19686 * 217.10685 * 8 6 5 10 10 C 1.54886 * 102.74742 * 37.94317 * 9 8 6 11 11 C 1.53876 * 110.03326 * 104.73062 * 6 5 4 12 12 H 1.09000 * 110.03364 * 238.62233 * 11 6 5 13 13 N 1.46509 * 110.03157 * 359.97438 * 11 6 5 14 14 C 1.39683 * 120.00120 * 207.89037 * 13 11 6 15 15 C 1.39332 * 119.95169 * 0.02562 * 14 13 11 16 16 C 1.38482 * 120.42182 * 179.97438 * 15 14 13 17 17 C 1.37682 * 120.32815 * 359.97438 * 16 15 14 18 18 C 1.40750 * 119.89076 * 0.02562 * 17 16 15 19 19 C 1.41406 * 120.20855 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99720 * 24.97237 * 19 18 17 21 21 C 1.39930 * 120.00556 * 204.97222 * 19 18 17 22 22 N 1.30831 * 119.99849 * 16.89981 * 21 19 18 23 23 Si 1.86798 * 120.00318 * 196.90382 * 21 19 18 24 24 H 1.48505 * 109.47144 * 89.99565 * 23 21 19 25 25 H 1.48499 * 109.46922 * 209.99862 * 23 21 19 26 26 H 1.48497 * 109.46869 * 329.99631 * 23 21 19 27 27 C 1.38278 * 119.95032 * 179.72438 * 14 13 11 28 28 C 1.38244 * 119.99984 * 359.80657 * 5 4 3 29 29 C 1.38234 * 119.99629 * 180.27738 * 2 1 3 30 30 H 1.09001 * 109.47525 * 269.72215 * 1 2 3 31 31 H 1.09003 * 109.47382 * 149.71983 * 1 2 3 32 32 H 1.09004 * 109.47374 * 29.72691 * 1 2 3 33 33 H 1.07995 * 119.99938 * 0.02562 * 3 2 1 34 34 H 1.07997 * 120.00168 * 180.27608 * 4 3 2 35 35 H 1.08994 * 110.48833 * 335.78742 * 8 6 5 36 36 H 1.09006 * 110.48396 * 98.43115 * 8 6 5 37 37 H 1.09000 * 110.75425 * 279.62877 * 9 8 6 38 38 H 1.08996 * 110.75707 * 156.25815 * 9 8 6 39 39 H 1.09003 * 110.48513 * 203.37609 * 10 9 8 40 40 H 1.09003 * 110.59766 * 80.79536 * 10 9 8 41 41 H 0.97003 * 119.99378 * 27.89801 * 13 11 6 42 42 H 1.08001 * 119.79160 * 359.97438 * 15 14 13 43 43 H 1.07999 * 119.83664 * 179.97438 * 16 15 14 44 44 H 1.07991 * 120.05815 * 180.02562 * 17 16 15 45 45 H 0.96998 * 120.00155 * 180.02562 * 22 21 19 46 46 H 1.08005 * 120.16359 * 0.02797 * 27 14 13 47 47 H 1.07993 * 119.99770 * 180.02562 * 28 5 4 48 48 H 1.07996 * 120.00746 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0045 5 6 4.2717 0.0000 -0.0003 6 6 5.7786 -0.0001 0.0007 7 1 6.1520 0.9824 -0.2883 8 6 6.3077 -1.0746 -0.9715 9 6 7.5624 -1.6430 -0.2632 10 6 7.1352 -1.6625 1.2254 11 6 6.3048 -0.3739 1.3975 12 1 6.9334 0.4272 1.7865 13 7 5.1829 -0.6171 2.3079 14 6 5.3358 -0.3982 3.6789 15 6 6.5556 0.0520 4.1797 16 6 6.7178 0.2727 5.5371 17 6 5.6744 0.0500 6.4073 18 6 4.4363 -0.4049 5.9160 19 6 3.3602 -0.6364 6.8038 20 1 3.3179 -0.1148 7.7486 21 6 2.3503 -1.5411 6.4583 22 7 2.5487 -2.4077 5.4984 23 14 0.7187 -1.5116 7.3673 24 1 -0.2161 -0.5871 6.6768 25 1 0.1385 -2.8784 7.3875 26 1 0.9366 -1.0458 8.7604 27 6 4.2746 -0.6227 4.5365 28 6 3.5804 -1.1972 -0.0057 29 6 2.1981 -1.1972 -0.0058 30 1 -0.3634 -0.0050 1.0276 31 1 -0.3634 -0.8875 -0.5182 32 1 -0.3634 0.8924 -0.5096 33 1 1.6582 2.1324 0.0004 34 1 4.1205 2.1324 0.0090 35 1 5.5637 -1.8578 -1.1162 36 1 6.5797 -0.6244 -1.9263 37 1 8.4199 -0.9863 -0.4105 38 1 7.7815 -2.6509 -0.6154 39 1 8.0110 -1.6415 1.8740 40 1 6.5254 -2.5406 1.4379 41 1 4.3339 -0.9303 1.9584 42 1 7.3799 0.2300 3.5049 43 1 7.6676 0.6214 5.9151 44 1 5.8056 0.2239 7.4650 45 1 1.8484 -3.0347 5.2586 46 1 3.3272 -0.9675 4.1489 47 1 4.1204 -2.1325 -0.0091 48 1 1.6581 -2.1325 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664752021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:58 Heat of formation + Delta-G solvation = 32.277795 kcal Electronic energy + Delta-G solvation = -27173.861219 eV Core-core repulsion = 23771.027131 eV Total energy + Delta-G solvation = -3402.834087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.179 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.18379 -38.07027 -37.05878 -33.99760 -32.96677 -32.77879 -30.81957 -29.36197 -29.06186 -28.54291 -26.01104 -25.44823 -25.03736 -22.73630 -21.49786 -20.88958 -20.56760 -19.94817 -18.96818 -17.26499 -16.27939 -16.21393 -15.27045 -15.17578 -14.90934 -14.56390 -14.48489 -14.30984 -13.77107 -13.62490 -13.30218 -12.98153 -12.87383 -12.76722 -12.34461 -12.22683 -12.08653 -11.88222 -11.59104 -11.44513 -11.18967 -11.08196 -11.01201 -10.93520 -10.91574 -10.65373 -10.55817 -10.50104 -10.40313 -10.17661 -9.52887 -9.34278 -9.17075 -8.73333 -8.64892 -8.25812 -7.22065 -6.64976 -6.03304 -4.24012 1.48980 1.56890 2.92346 3.12953 3.16857 3.31427 3.41278 3.87931 4.02844 4.40223 4.67381 4.70747 4.82418 4.91982 4.99220 5.04632 5.15562 5.26413 5.36810 5.55305 5.60720 5.65428 5.66915 5.68471 5.73536 5.81370 5.86119 5.88296 5.91925 5.99231 6.07365 6.20075 6.24256 6.31103 6.36166 6.39381 6.52553 6.58552 6.69973 6.74817 6.79224 6.97322 7.16799 7.20518 7.22999 7.47916 7.55349 7.92636 8.05100 8.20746 8.26519 8.58594 8.86506 8.94336 9.09605 9.21886 10.33515 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.009664 B = 0.005181 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.669134 B = 5403.325541 C = 7432.137103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.115 4.115 4 C -0.109 4.109 5 C -0.062 4.062 6 C -0.063 4.063 7 H 0.081 0.919 8 C -0.119 4.119 9 C -0.124 4.124 10 C -0.139 4.139 11 C 0.164 3.836 12 H 0.080 0.920 13 N -0.751 5.751 14 C 0.218 3.782 15 C -0.299 4.299 16 C -0.067 4.067 17 C -0.259 4.259 18 C 0.139 3.861 19 C -0.466 4.466 20 H 0.074 0.926 21 C 0.078 3.922 22 N -0.793 5.793 23 Si 0.902 3.098 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.263 1.263 27 C -0.229 4.229 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.392 0.608 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.276 0.724 46 H 0.115 0.885 47 H 0.123 0.877 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.811 2.154 -15.069 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.133 4.133 4 C -0.127 4.127 5 C -0.063 4.063 6 C -0.083 4.083 7 H 0.100 0.900 8 C -0.156 4.156 9 C -0.162 4.162 10 C -0.178 4.178 11 C 0.057 3.943 12 H 0.098 0.902 13 N -0.387 5.387 14 C 0.119 3.881 15 C -0.322 4.322 16 C -0.086 4.086 17 C -0.280 4.280 18 C 0.136 3.864 19 C -0.496 4.496 20 H 0.093 0.907 21 C -0.139 4.139 22 N -0.419 5.419 23 Si 0.727 3.273 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.187 1.187 27 C -0.253 4.253 28 C -0.138 4.138 29 C -0.132 4.132 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.231 0.769 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.086 0.914 46 H 0.133 0.867 47 H 0.141 0.859 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.853 2.003 -15.226 15.381 hybrid contribution -1.016 -0.218 0.427 1.124 sum -0.163 1.784 -14.799 14.907 Atomic orbital electron populations 1.20776 0.91526 1.02222 1.02477 1.19857 0.95920 0.93257 1.00231 1.20961 0.94150 0.97375 1.00851 1.20964 0.94062 0.97457 1.00248 1.19584 0.94844 0.93102 0.98723 1.21142 0.91204 0.99882 0.96026 0.90016 1.22534 0.97672 0.97852 0.97562 1.22469 0.97306 1.00592 0.95860 1.22941 1.00167 0.99377 0.95317 1.21233 0.88667 0.96393 0.88030 0.90210 1.44956 1.13511 1.76567 1.03661 1.17688 0.94109 0.93804 0.82528 1.19903 0.96719 1.20626 0.94971 1.20272 0.96579 0.98577 0.93173 1.20840 0.94431 1.15621 0.97095 1.17315 0.90844 0.86709 0.91510 1.19540 1.04774 1.21435 1.03848 0.90736 1.25843 0.99614 0.93758 0.94646 1.69871 1.33038 1.13204 1.25744 0.86420 0.82042 0.78039 0.80796 1.19474 1.20493 1.18724 1.20702 0.97683 1.14271 0.92637 1.21000 0.94095 0.97799 1.00920 1.20986 0.94113 0.97492 1.00587 0.91050 0.91816 0.91878 0.86421 0.86411 0.90995 0.91753 0.91618 0.91749 0.91561 0.91121 0.76898 0.89656 0.89845 0.89574 0.91362 0.86746 0.85914 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 36.00 0.36 -0.89 16 2 C -0.09 -1.25 5.88 -104.63 -0.62 -1.87 16 3 C -0.12 -1.57 9.70 -39.58 -0.38 -1.95 16 4 C -0.11 -1.53 9.68 -39.58 -0.38 -1.91 16 5 C -0.06 -0.87 3.63 -104.62 -0.38 -1.25 16 6 C -0.06 -0.82 3.13 -90.66 -0.28 -1.10 16 7 H 0.08 0.97 8.00 -51.93 -0.42 0.56 16 8 C -0.12 -1.30 6.23 -25.07 -0.16 -1.46 16 9 C -0.12 -1.37 6.91 -24.74 -0.17 -1.54 16 10 C -0.14 -1.99 6.53 -25.08 -0.16 -2.15 16 11 C 0.16 2.57 2.99 -66.81 -0.20 2.37 16 12 H 0.08 1.31 6.26 -51.93 -0.33 0.99 16 13 N -0.75 -14.69 4.73 -51.13 -0.24 -14.93 16 14 C 0.22 5.18 6.64 -83.86 -0.56 4.63 16 15 C -0.30 -6.91 9.22 -39.08 -0.36 -7.27 16 16 C -0.07 -1.59 10.01 -39.69 -0.40 -1.99 16 17 C -0.26 -6.72 9.79 -38.84 -0.38 -7.10 16 18 C 0.14 3.88 5.57 -106.85 -0.59 3.29 16 19 C -0.47 -12.88 9.05 -37.74 -0.34 -13.23 16 20 H 0.07 2.00 7.90 -52.49 -0.41 1.58 16 21 C 0.08 2.04 5.15 -17.34 -0.09 1.95 16 22 N -0.79 -21.12 10.95 55.55 0.61 -20.51 16 23 Si 0.90 19.35 29.59 -169.99 -5.03 14.32 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 26 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.23 -6.16 8.53 -38.68 -0.33 -6.49 16 28 C -0.12 -1.69 6.77 -39.58 -0.27 -1.96 16 29 C -0.11 -1.57 9.70 -39.58 -0.38 -1.96 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.48 8.02 -52.49 -0.42 1.06 16 35 H 0.07 0.80 5.85 -51.93 -0.30 0.50 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 41 H 0.39 7.69 5.10 -40.82 -0.21 7.48 16 42 H 0.09 1.77 6.14 -52.49 -0.32 1.44 16 43 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 45 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 46 H 0.11 3.22 6.18 -52.48 -0.32 2.90 16 47 H 0.12 1.64 6.69 -52.49 -0.35 1.29 16 48 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -29.04 377.33 -12.34 -41.38 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -7.28 Total: 15.92 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: -6.08 Total: -41.86 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.37 Total: -35.44 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.04 -12.34 -41.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664752021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.661 kcal (2) G-P(sol) polarization free energy of solvation -29.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds