Wall clock time and date at job start Tue Mar 31 2020 12:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47142 * 2 1 4 4 N 1.46905 * 109.47337 * 179.97438 * 3 2 1 5 5 C 1.46898 * 110.99915 * 294.30529 * 4 3 2 6 6 C 1.53244 * 109.33635 * 172.74242 * 5 4 3 7 7 N 1.47076 * 108.51930 * 53.83221 * 6 5 4 8 8 C 1.34782 * 120.87853 * 128.79481 * 7 6 5 9 9 O 1.21588 * 119.99737 * 175.02501 * 8 7 6 10 10 N 1.34770 * 120.00124 * 355.01971 * 8 7 6 11 11 C 1.40199 * 120.00046 * 185.22081 * 10 8 7 12 12 C 1.40400 * 125.96915 * 0.02562 * 11 10 8 13 13 C 1.35251 * 107.86651 * 180.02562 * 12 11 10 14 14 N 1.34967 * 107.85399 * 359.97438 * 13 12 11 15 15 C 1.46501 * 125.97250 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47046 * 124.99865 * 15 14 13 17 17 H 1.07999 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.37883 * 120.00165 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99682 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00195 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47065 * 60.00410 * 20 18 16 22 22 H 1.48505 * 109.47076 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47092 * 299.99887 * 20 18 16 24 24 N 1.31213 * 125.97258 * 179.69105 * 11 10 8 25 25 C 1.47079 * 118.23720 * 308.80894 * 7 6 5 26 26 C 1.46896 * 110.99964 * 170.00115 * 4 3 2 27 27 H 1.09005 * 109.47062 * 59.99818 * 1 2 3 28 28 H 1.08998 * 109.47264 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47345 * 300.00210 * 1 2 3 30 30 H 1.09000 * 109.47086 * 240.00275 * 2 1 3 31 31 H 1.08995 * 109.46975 * 120.00012 * 2 1 3 32 32 H 1.08995 * 109.47196 * 299.99877 * 3 2 1 33 33 H 1.09000 * 109.46905 * 60.00164 * 3 2 1 34 34 H 1.08998 * 109.49696 * 292.70292 * 5 4 3 35 35 H 1.08998 * 109.49222 * 52.78719 * 5 4 3 36 36 H 1.09001 * 109.62853 * 294.11727 * 6 5 4 37 37 H 1.09009 * 109.62382 * 173.54029 * 6 5 4 38 38 H 0.97001 * 120.00570 * 5.22114 * 10 8 7 39 39 H 1.07997 * 126.06984 * 359.97438 * 12 11 10 40 40 H 1.07994 * 126.06856 * 180.02562 * 13 12 11 41 41 H 1.08994 * 109.47100 * 244.99998 * 15 14 13 42 42 H 1.09009 * 109.46975 * 5.00121 * 15 14 13 43 43 H 0.96999 * 119.99850 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.62653 * 291.48025 * 25 7 6 45 45 H 1.09000 * 109.62510 * 170.89809 * 25 7 6 46 46 H 1.08999 * 109.49327 * 307.21261 * 26 4 3 47 47 H 1.08994 * 109.49341 * 67.27403 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0350 0.8783 1.2508 6 6 5.5560 0.7284 1.1395 7 7 6.1266 2.0284 0.7555 8 6 7.1448 2.5702 1.4530 9 8 7.6642 3.6004 1.0693 10 7 7.5870 1.9700 2.5757 11 6 8.5705 2.5885 3.3604 12 6 9.1783 3.8263 3.0963 13 6 10.0697 4.0700 4.0839 14 7 10.0306 3.0294 4.9426 15 6 10.8373 2.8851 6.1570 16 6 9.9302 2.6559 7.3383 17 1 8.8599 2.6208 7.1985 18 6 10.4668 2.4899 8.5976 19 7 11.7702 2.5321 8.7677 20 14 9.3424 2.2051 10.0618 21 1 8.5495 0.9686 9.8439 22 1 10.1602 2.0589 11.2928 23 1 8.4238 3.3621 10.2129 24 7 9.0794 2.1147 4.4732 25 6 5.5565 2.7217 -0.4097 26 6 4.0355 2.7931 -0.2375 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.7947 1.5440 2.0798 35 1 3.5851 -0.0989 1.4263 36 1 5.7960 -0.0157 0.3800 37 1 5.9647 0.4189 2.1015 38 1 7.2249 1.1101 2.8410 39 1 8.9714 4.4694 2.2537 40 1 10.7000 4.9426 4.1704 41 1 11.5115 2.0358 6.0464 42 1 11.4194 3.7928 6.3165 43 1 12.1477 2.4150 9.6535 44 1 5.7967 2.1692 -1.3180 45 1 5.9657 3.7301 -0.4721 46 1 3.5861 3.2046 -1.1412 47 1 3.7949 3.4323 0.6120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173355310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:32 Heat of formation + Delta-G solvation = 70.563966 kcal Electronic energy + Delta-G solvation = -26783.072493 eV Core-core repulsion = 23003.342107 eV Total energy + Delta-G solvation = -3779.730386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90081 -40.01024 -38.55133 -35.61911 -34.82445 -33.45889 -32.98287 -31.48265 -30.77286 -29.26496 -28.25398 -26.58190 -25.01715 -24.23130 -23.15814 -22.15205 -21.26157 -20.74155 -20.07966 -19.12756 -18.09037 -16.68735 -16.54030 -16.13249 -15.85667 -15.72241 -15.46401 -15.18364 -14.79693 -14.69896 -14.31232 -14.17141 -13.99188 -13.56379 -13.30514 -12.82763 -12.78192 -12.35141 -12.30342 -12.23605 -12.18495 -11.86638 -11.76860 -11.63376 -11.43182 -11.26182 -11.05955 -10.85954 -10.85093 -10.43538 -10.24239 -10.04658 -9.64477 -9.48892 -9.04305 -8.63520 -8.60098 -8.07512 -7.38614 -6.23040 -4.28028 2.31495 2.67374 3.10737 3.25718 3.28958 3.32688 3.38621 3.46806 3.85152 4.08311 4.33382 4.40671 4.50604 4.60888 4.67276 4.86356 4.88685 4.93670 5.01276 5.11819 5.13571 5.18376 5.23254 5.33190 5.42922 5.46179 5.51241 5.59604 5.64583 5.73014 5.78295 5.83313 5.86987 6.12080 6.34927 6.55264 6.56444 6.62722 6.70596 6.84982 6.99747 7.11088 7.51303 7.70339 7.81152 7.95817 8.08863 8.57967 8.68176 8.82083 9.37262 10.85588 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.002480 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.981251 B =11285.451638 C =12696.987885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.538 5.538 5 C 0.037 3.963 6 C 0.114 3.886 7 N -0.630 5.630 8 C 0.718 3.282 9 O -0.566 6.566 10 N -0.644 5.644 11 C 0.275 3.725 12 C -0.286 4.286 13 C 0.051 3.949 14 N -0.320 5.320 15 C 0.259 3.741 16 C -0.528 4.528 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 N -0.308 5.308 25 C 0.138 3.862 26 C 0.040 3.960 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.405 0.595 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.268 0.732 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.544 -3.301 -19.212 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.263 5.263 5 C -0.092 4.092 6 C -0.010 4.010 7 N -0.369 5.369 8 C 0.419 3.581 9 O -0.441 6.441 10 N -0.296 5.296 11 C 0.021 3.979 12 C -0.318 4.318 13 C -0.099 4.099 14 N -0.102 5.102 15 C 0.141 3.859 16 C -0.566 4.566 17 H 0.086 0.914 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.201 1.201 24 N -0.139 5.139 25 C 0.014 3.986 26 C -0.089 4.089 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.242 0.758 39 H 0.177 0.823 40 H 0.185 0.815 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.106 0.894 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -17.783 -3.811 -18.777 26.141 hybrid contribution -1.007 0.481 1.221 1.655 sum -18.791 -3.330 -17.555 25.930 Atomic orbital electron populations 1.21740 0.95582 1.01873 1.01790 1.21555 0.95433 0.96241 1.02768 1.22168 0.86698 0.97466 1.00961 1.61957 1.07644 1.21981 1.34682 1.22552 0.94962 1.00928 0.90738 1.21768 0.92706 0.85468 1.01040 1.47260 1.35623 1.21975 1.32029 1.15509 0.80076 0.83057 0.79493 1.90854 1.58969 1.24652 1.69675 1.41577 1.40555 1.23872 1.23621 1.18802 0.93223 0.93638 0.92217 1.21493 1.05364 0.99619 1.05282 1.22548 1.01059 0.94465 0.91800 1.49049 1.28338 1.12762 1.20086 1.19727 0.89485 0.99183 0.77472 1.21217 0.93863 1.50564 0.90998 0.91399 1.24948 0.95364 0.94769 0.99034 1.69910 1.10373 1.49306 1.23771 0.86387 0.80238 0.79019 0.80837 1.19960 1.21047 1.20082 1.77317 1.08616 1.16875 1.11123 1.21555 0.91066 0.98982 0.86955 1.22544 0.95546 0.89266 1.01535 0.92671 0.92459 0.92847 0.91020 0.91883 0.90624 0.94820 0.94059 0.89079 0.90139 0.89983 0.75799 0.82273 0.81529 0.93750 0.92549 0.92290 0.90809 0.88283 0.89385 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.70 5.87 -26.73 -0.16 -0.85 16 3 C 0.05 0.35 4.96 -3.82 -0.02 0.34 16 4 N -0.54 -4.13 4.63 -234.32 -1.08 -5.21 16 5 C 0.04 0.29 5.46 -3.70 -0.02 0.27 16 6 C 0.11 0.98 6.59 -3.60 -0.02 0.96 16 7 N -0.63 -7.24 3.01 -178.19 -0.54 -7.77 16 8 C 0.72 11.22 8.27 -86.92 -0.72 10.50 16 9 O -0.57 -10.52 12.97 5.29 0.07 -10.45 16 10 N -0.64 -10.57 5.37 -15.51 -0.08 -10.66 16 11 C 0.28 5.69 8.11 -154.36 -1.25 4.44 16 12 C -0.29 -5.86 9.61 -39.83 -0.38 -6.24 16 13 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 14 N -0.32 -7.56 3.67 -62.56 -0.23 -7.79 16 15 C 0.26 6.64 6.26 -5.20 -0.03 6.61 16 16 C -0.53 -14.77 9.23 -34.44 -0.32 -15.09 16 17 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.90 -25.42 13.29 55.43 0.74 -24.69 16 20 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 N -0.31 -7.22 12.41 31.44 0.39 -6.82 16 25 C 0.14 1.33 6.58 -3.60 -0.02 1.30 16 26 C 0.04 0.32 5.62 -3.70 -0.02 0.30 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.37 6.40 -51.93 -0.33 0.03 16 32 H 0.08 0.44 7.97 -51.93 -0.41 0.03 16 33 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.58 6.16 -51.93 -0.32 0.26 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.66 5.64 -51.92 -0.29 0.37 16 38 H 0.40 5.53 6.32 -40.82 -0.26 5.28 16 39 H 0.16 3.20 5.93 -52.49 -0.31 2.89 16 40 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 41 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.42 8.07 -51.92 -0.42 1.00 16 43 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 1.07 7.09 -51.93 -0.37 0.70 16 46 H 0.09 0.55 7.99 -51.93 -0.41 0.14 16 47 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -32.75 376.72 -10.30 -43.05 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.32 Total: 3.67 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -2.89 Total: 4.60 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -0.81 Total: -62.94 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.75 -10.30 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173355310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.616 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds