Wall clock time and date at job start Tue Mar 31 2020 12:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46781 * 2 1 4 4 N 1.46506 * 109.46787 * 180.02562 * 3 2 1 5 5 C 1.34814 * 126.59386 * 125.00116 * 4 3 2 6 6 C 1.36596 * 106.83874 * 179.97438 * 5 4 3 7 7 C 1.47526 * 125.77190 * 179.97438 * 6 5 4 8 8 O 1.21599 * 119.99529 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00160 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00151 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47021 * 324.99552 * 10 9 7 12 12 C 1.53005 * 109.47414 * 84.99440 * 10 9 7 13 13 C 1.52997 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 10 15 15 C 1.53000 * 109.47233 * 60.00194 * 14 13 12 16 16 H 1.09002 * 109.47398 * 59.99826 * 15 14 13 17 17 N 1.46500 * 109.47023 * 179.97438 * 15 14 13 18 18 C 1.36931 * 119.99971 * 274.99678 * 17 15 14 19 19 H 1.08005 * 120.00425 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00390 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99556 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00553 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00050 * 22 20 18 24 24 H 1.48500 * 109.47547 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46942 * 299.99859 * 22 20 18 26 26 C 1.52997 * 109.47060 * 299.99657 * 15 14 13 27 27 N 1.34397 * 108.45974 * 0.24012 * 6 5 4 28 28 N 1.28763 * 109.52168 * 359.58888 * 27 6 5 29 29 H 1.08999 * 109.46904 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46887 * 299.99593 * 1 2 3 31 31 H 1.08998 * 109.47125 * 60.00035 * 1 2 3 32 32 H 1.09000 * 109.46887 * 240.00407 * 2 1 3 33 33 H 1.08998 * 109.47125 * 119.99965 * 2 1 3 34 34 H 1.09000 * 109.47077 * 60.00523 * 3 2 1 35 35 H 1.08998 * 109.47262 * 299.99881 * 3 2 1 36 36 H 1.07996 * 126.58164 * 0.02562 * 5 4 3 37 37 H 0.96994 * 119.99727 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.46935 * 60.00059 * 12 10 9 39 39 H 1.09001 * 109.46812 * 300.00401 * 12 10 9 40 40 H 1.08993 * 109.47194 * 179.97438 * 13 12 10 41 41 H 1.09002 * 109.46695 * 59.99734 * 13 12 10 42 42 H 1.08992 * 109.47063 * 299.99823 * 14 13 12 43 43 H 1.09004 * 109.46733 * 179.97438 * 14 13 12 44 44 H 0.97004 * 120.00223 * 94.99655 * 17 15 14 45 45 H 0.96997 * 119.99679 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.47853 * 180.02562 * 26 15 14 47 47 H 1.09002 * 109.47153 * 300.00319 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3083 2.0635 -0.8875 6 6 5.5941 1.7991 -0.5096 7 6 6.8100 2.2779 -1.1942 8 8 6.7146 2.9723 -2.1878 9 7 8.0264 1.9449 -0.7189 10 6 9.2338 2.4198 -1.3991 11 1 9.0562 2.4524 -2.4741 12 6 9.5836 3.8223 -0.8974 13 6 10.8442 4.3187 -1.6082 14 6 12.0049 3.3667 -1.3120 15 6 11.6551 1.9644 -1.8139 16 1 11.4772 1.9970 -2.8888 17 7 12.7667 1.0531 -1.5309 18 6 13.8165 0.9614 -2.4052 19 1 13.8249 1.5606 -3.3038 20 6 14.8696 0.0976 -2.1374 21 7 14.8592 -0.6331 -1.0426 22 14 16.3020 -0.0270 -3.3298 23 1 16.9526 1.3014 -3.4625 24 1 17.2879 -1.0126 -2.8181 25 1 15.8041 -0.4691 -4.6572 26 6 10.3945 1.4680 -1.1031 27 7 5.5642 1.0242 0.5881 28 7 4.3413 0.7972 0.9214 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9954 2.6569 -1.7338 37 1 8.1023 1.3906 0.0734 38 1 9.7611 3.7898 0.1776 39 1 8.7568 4.5005 -1.1087 40 1 11.0931 5.3179 -1.2510 41 1 10.6662 4.3512 -2.6831 42 1 12.1828 3.3341 -0.2372 43 1 12.9029 3.7201 -1.8188 44 1 12.7591 0.5146 -0.7241 45 1 15.5948 -1.2370 -0.8557 46 1 10.1454 0.4688 -1.4602 47 1 10.5724 1.4354 -0.0282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981426607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:32 Heat of formation + Delta-G solvation = 47.706205 kcal Electronic energy + Delta-G solvation = -26399.317179 eV Core-core repulsion = 22618.595606 eV Total energy + Delta-G solvation = -3780.721573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.47266 -39.72463 -37.83395 -36.45395 -34.64587 -33.37951 -32.96161 -31.25444 -31.03922 -29.25744 -27.80563 -27.37932 -24.13682 -23.60446 -23.20095 -21.98008 -21.85691 -21.10183 -20.21246 -19.43852 -18.27717 -17.04343 -16.60297 -16.40372 -16.18302 -15.61040 -15.03056 -14.93320 -14.63512 -14.34566 -14.09876 -13.89304 -13.69263 -13.45199 -13.25828 -13.10164 -12.70892 -12.62266 -12.48047 -12.11310 -12.08707 -12.01059 -11.65619 -11.38306 -10.95265 -10.88620 -10.82783 -10.67088 -10.66268 -10.34691 -10.28858 -10.15613 -10.11119 -9.69565 -9.58733 -9.53517 -8.91379 -8.80794 -6.91359 -5.72179 -3.00659 0.85323 1.53305 1.67178 3.13312 3.23394 3.47454 3.51781 3.52690 3.80145 3.97005 4.11112 4.38555 4.50320 4.59553 4.62184 4.69944 4.74706 4.93134 5.04094 5.07756 5.15016 5.35530 5.37145 5.40010 5.53703 5.55704 5.57821 5.67403 5.75120 5.81265 5.94166 6.01949 6.03401 6.08946 6.19809 6.36604 6.39445 6.57717 6.59910 6.68588 6.78959 7.02455 7.18301 7.46641 7.74315 7.75193 8.18862 8.46582 9.57523 10.15515 10.50328 11.50483 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023276 B = 0.002104 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.672626 B =13306.100293 C =13995.657103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.362 5.362 5 C 0.091 3.909 6 C -0.099 4.099 7 C 0.603 3.397 8 O -0.542 6.542 9 N -0.706 5.706 10 C 0.149 3.851 11 H 0.089 0.911 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.137 4.137 15 C 0.184 3.816 16 H 0.049 0.951 17 N -0.724 5.724 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.130 4.130 27 N -0.203 5.203 28 N -0.064 5.064 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.204 0.796 37 H 0.407 0.593 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.069 0.931 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.941 6.471 2.802 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.147 5.147 5 C -0.065 4.065 6 C -0.239 4.239 7 C 0.387 3.613 8 O -0.419 6.419 9 N -0.355 5.355 10 C 0.045 3.955 11 H 0.108 0.892 12 C -0.163 4.163 13 C -0.153 4.153 14 C -0.177 4.177 15 C 0.073 3.927 16 H 0.067 0.933 17 N -0.364 5.364 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.169 4.169 27 N -0.077 5.077 28 N -0.044 5.044 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.221 0.779 37 H 0.243 0.757 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -29.840 6.068 3.199 30.618 hybrid contribution 0.648 0.087 -0.769 1.010 sum -29.191 6.154 2.429 29.932 Atomic orbital electron populations 1.21706 0.93793 1.02957 1.02336 1.21842 0.97004 0.94510 1.04351 1.22171 0.72493 1.00171 1.05176 1.50581 1.08850 1.35247 1.20051 1.23393 0.90189 0.97049 0.95916 1.21570 0.94707 1.08207 0.99391 1.16751 0.81842 0.79672 0.83021 1.90805 1.86671 1.38798 1.25578 1.45965 1.05064 1.52831 1.31659 1.21086 0.82863 0.93750 0.97765 0.89250 1.21893 0.98089 0.95862 1.00454 1.21482 0.94843 0.98736 1.00208 1.22293 0.97118 0.97017 1.01309 1.20097 0.86556 0.89143 0.96883 0.93347 1.42394 1.19835 1.47693 1.26511 1.19204 0.97226 1.18986 1.01402 0.91200 1.24737 0.98908 0.99546 0.97852 1.69654 1.33137 1.29446 1.25979 0.86278 0.82392 0.77228 0.80353 1.21306 1.21766 1.21320 1.22098 0.94460 0.98606 1.01742 1.74663 1.12909 1.09891 1.10236 1.81980 0.93356 1.17311 1.11770 0.91571 0.92073 0.92204 0.90957 0.89955 0.88295 0.87673 0.77901 0.75747 0.91947 0.92140 0.92519 0.92156 0.92628 0.91911 0.78297 0.93527 0.91204 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.35 9.91 37.16 0.37 0.02 16 2 C -0.14 -0.55 6.14 -26.73 -0.16 -0.72 16 3 C 0.12 0.45 6.54 -4.04 -0.03 0.43 16 4 N -0.36 -2.91 3.69 -61.06 -0.23 -3.14 16 5 C 0.09 0.80 11.27 -16.83 -0.19 0.61 16 6 C -0.10 -1.19 6.99 -83.55 -0.58 -1.78 16 7 C 0.60 8.38 7.78 -12.48 -0.10 8.28 16 8 O -0.54 -8.69 16.53 5.28 0.09 -8.61 16 9 N -0.71 -9.51 5.07 -54.85 -0.28 -9.79 16 10 C 0.15 2.19 2.45 -67.93 -0.17 2.02 16 11 H 0.09 1.43 7.58 -51.93 -0.39 1.03 16 12 C -0.12 -1.74 5.49 -26.73 -0.15 -1.89 16 13 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.14 -2.45 5.50 -26.73 -0.15 -2.60 16 15 C 0.18 3.63 2.77 -67.93 -0.19 3.45 16 16 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 17 N -0.72 -18.11 5.12 -53.43 -0.27 -18.39 16 18 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 22 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C -0.13 -2.15 4.86 -26.73 -0.13 -2.28 16 27 N -0.20 -2.61 12.04 32.85 0.40 -2.21 16 28 N -0.06 -0.73 13.65 60.35 0.82 0.09 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.11 0.12 8.08 -51.93 -0.42 -0.30 16 36 H 0.20 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.41 5.09 8.29 -40.82 -0.34 4.75 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 45 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -33.74 389.11 -7.56 -41.30 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.78 Total: 8.48 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.88 Total: -3.54 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 1.17 Total: -61.07 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.74 -7.56 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981426607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.003 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds