Wall clock time and date at job start Tue Mar 31 2020 12:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46983 * 2 1 4 4 C 1.53001 * 109.47188 * 119.99997 * 2 1 3 5 5 N 1.46503 * 109.47017 * 239.99933 * 2 1 3 6 6 C 1.34584 * 125.74518 * 74.99983 * 5 2 1 7 7 N 1.30868 * 107.62601 * 179.97438 * 6 5 2 8 8 C 1.34555 * 107.26739 * 359.97438 * 7 6 5 9 9 C 1.47869 * 126.04960 * 180.02562 * 8 7 6 10 10 O 1.21549 * 119.99954 * 179.97438 * 9 8 7 11 11 N 1.34781 * 120.00029 * 359.97438 * 9 8 7 12 12 C 1.46493 * 120.00091 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47201 * 179.97438 * 12 11 9 14 14 H 1.09001 * 110.88151 * 54.29866 * 13 12 11 15 15 C 1.55150 * 111.00401 * 178.17802 * 13 12 11 16 16 C 1.54324 * 102.94249 * 153.57647 * 15 13 12 17 17 N 1.47016 * 107.26961 * 337.81120 * 16 15 13 18 18 C 1.36944 * 125.65087 * 178.97063 * 17 16 15 19 19 H 1.08003 * 120.00198 * 174.78648 * 18 17 16 20 20 C 1.38809 * 119.99838 * 354.79321 * 18 17 16 21 21 N 1.31621 * 119.99739 * 7.05087 * 20 18 17 22 22 Si 1.86804 * 120.00221 * 187.05073 * 20 18 17 23 23 H 1.48501 * 109.46637 * 94.98598 * 22 20 18 24 24 H 1.48490 * 109.47089 * 214.98409 * 22 20 18 25 25 H 1.48500 * 109.46990 * 334.98612 * 22 20 18 26 26 C 1.47472 * 108.72616 * 358.97048 * 17 16 15 27 27 N 1.28845 * 125.74987 * 254.69077 * 5 2 1 28 28 H 1.08999 * 109.47114 * 59.99888 * 1 2 3 29 29 H 1.08999 * 109.46989 * 299.99703 * 1 2 3 30 30 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47015 * 60.00313 * 3 2 1 32 32 H 1.09004 * 109.46577 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47287 * 300.00006 * 3 2 1 34 34 H 1.09000 * 109.47024 * 60.00031 * 4 2 1 35 35 H 1.09001 * 109.46876 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.46907 * 300.00028 * 4 2 1 37 37 H 1.07998 * 126.18852 * 359.96775 * 6 5 2 38 38 H 0.96997 * 119.99793 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.47477 * 300.00185 * 12 11 9 40 40 H 1.09003 * 109.47138 * 59.99955 * 12 11 9 41 41 H 1.08996 * 110.72640 * 271.94323 * 15 13 12 42 42 H 1.09001 * 110.72260 * 35.04134 * 15 13 12 43 43 H 1.08998 * 109.87945 * 97.22515 * 16 15 13 44 44 H 1.09005 * 109.88519 * 218.23768 * 16 15 13 45 45 H 0.97005 * 119.99623 * 180.02562 * 21 20 18 46 46 H 1.08993 * 110.35039 * 265.25369 * 26 17 16 47 47 H 1.08996 * 110.40648 * 142.91744 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 2.0184 -0.6906 -1.1962 6 6 2.0139 -0.1947 -2.4473 7 7 2.5283 -1.1037 -3.2358 8 6 2.8507 -2.1613 -2.4690 9 6 3.4628 -3.4226 -2.9391 10 8 3.7097 -4.3106 -2.1468 11 7 3.7470 -3.5876 -4.2463 12 6 4.3539 -4.8369 -4.7120 13 6 4.5707 -4.7657 -6.2249 14 1 5.1471 -3.8804 -6.4935 15 6 5.2550 -6.0553 -6.7499 16 6 4.7833 -6.1239 -8.2177 17 7 3.5484 -5.3324 -8.3167 18 6 2.8231 -5.1244 -9.4595 19 1 1.8821 -4.5963 -9.4133 20 6 3.2972 -5.5924 -10.6772 21 7 4.3700 -6.3541 -10.7169 22 14 2.4129 -5.1414 -12.2597 23 1 3.0612 -3.9513 -12.8669 24 1 2.4835 -6.2815 -13.2084 25 1 0.9913 -4.8327 -11.9615 26 6 3.2195 -4.7992 -6.9816 27 7 2.5296 -1.8729 -1.2268 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1301 -0.7216 1.2490 36 1 1.6767 -0.2074 2.1392 37 1 1.6512 0.7776 -2.7465 38 1 3.5496 -2.8790 -4.8786 39 1 5.3122 -4.9832 -4.2137 40 1 3.6922 -5.6712 -4.4790 41 1 6.3400 -5.9651 -6.6974 42 1 4.9145 -6.9273 -6.1915 43 1 5.5466 -5.7034 -8.8724 44 1 4.5860 -7.1593 -8.4957 45 1 4.7015 -6.6809 -11.5679 46 1 2.5160 -5.4583 -6.4730 47 1 2.8063 -3.7941 -7.0650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028802415.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:07 Heat of formation + Delta-G solvation = 75.363769 kcal Electronic energy + Delta-G solvation = -26768.372396 eV Core-core repulsion = 22988.850145 eV Total energy + Delta-G solvation = -3779.522251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.70761 -39.46428 -37.78909 -37.45725 -34.63624 -32.93290 -32.35294 -31.24976 -29.74731 -28.31707 -28.15042 -28.00962 -25.86983 -24.57658 -23.30067 -22.97076 -20.65323 -20.43015 -19.88597 -19.70637 -17.98079 -16.89965 -16.81726 -16.59860 -16.04892 -15.42951 -14.93260 -14.79369 -14.65346 -14.55567 -14.20000 -13.84423 -13.45047 -13.31512 -13.11208 -12.95878 -12.89578 -12.44016 -12.32052 -12.26776 -11.99174 -11.91100 -11.69215 -11.57389 -11.31998 -10.85098 -10.76667 -10.60797 -10.57102 -10.44278 -10.15100 -10.01809 -9.87480 -9.76027 -9.72995 -9.61857 -8.89903 -8.52651 -6.77183 -5.67654 -2.99489 1.28579 1.83604 1.95638 3.07948 3.39695 3.43502 3.48547 3.50687 3.76257 3.98398 4.02701 4.13271 4.43978 4.53938 4.65822 4.78328 4.90873 4.96746 5.03033 5.09239 5.17189 5.17783 5.30240 5.31305 5.48986 5.50703 5.58957 5.66372 5.73800 5.84387 5.96242 6.08944 6.12447 6.15121 6.30297 6.41365 6.47743 6.58689 6.60697 6.75923 6.98816 7.51045 7.61252 7.69358 7.87868 7.90547 8.24997 8.31272 9.27120 9.87733 10.54593 11.44632 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.021334 B = 0.002309 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.145951 B =12122.259220 C =13099.798024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.160 4.160 4 C -0.149 4.149 5 N -0.294 5.294 6 C 0.189 3.811 7 N -0.481 5.481 8 C 0.141 3.859 9 C 0.613 3.387 10 O -0.526 6.526 11 N -0.702 5.702 12 C 0.134 3.866 13 C -0.117 4.117 14 H 0.081 0.919 15 C -0.134 4.134 16 C 0.176 3.824 17 N -0.606 5.606 18 C -0.227 4.227 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.141 3.859 27 N -0.248 5.248 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.221 0.779 38 H 0.412 0.588 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.041 0.959 45 H 0.252 0.748 46 H 0.019 0.981 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.795 16.987 24.088 29.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.218 4.218 4 C -0.206 4.206 5 N -0.091 5.091 6 C -0.107 4.107 7 N -0.206 5.206 8 C -0.139 4.139 9 C 0.394 3.606 10 O -0.399 6.399 11 N -0.354 5.354 12 C 0.011 3.989 13 C -0.137 4.137 14 H 0.100 0.900 15 C -0.173 4.173 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.015 3.985 27 N -0.087 5.087 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.238 0.762 38 H 0.248 0.752 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.037 0.963 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.437 15.815 24.590 29.571 hybrid contribution -0.727 0.958 -1.236 1.725 sum -5.164 16.774 23.354 29.213 Atomic orbital electron populations 1.22271 0.91676 1.04014 1.03883 1.21169 0.95357 0.92441 0.82564 1.22267 1.02722 0.92633 1.04218 1.21998 1.02598 1.01703 0.94338 1.47793 1.41440 1.10447 1.09406 1.26321 1.01669 1.01464 0.81221 1.71316 1.16352 1.00712 1.32218 1.23810 1.06323 0.97010 0.86733 1.16278 0.78236 0.83205 0.82862 1.90814 1.53052 1.41427 1.54618 1.45778 1.62194 1.20025 1.07403 1.21495 0.97967 0.85106 0.94381 1.22613 0.99538 0.99985 0.91574 0.90031 1.22851 0.99145 0.95575 0.99727 1.21147 0.88537 0.96078 0.89060 1.44495 1.27219 1.58350 1.03208 1.19070 1.01477 1.31039 0.83963 0.90460 1.24822 0.97997 1.00064 0.97618 1.69986 1.25041 1.37562 1.24225 0.86121 0.78720 0.77560 0.83537 1.21654 1.21830 1.20668 1.21598 0.93101 0.96776 0.87042 1.74281 1.13412 0.98897 1.22081 0.91263 0.89565 0.91178 0.89306 0.91119 0.91056 0.90491 0.91249 0.90311 0.76230 0.75214 0.91286 0.90991 0.91945 0.92157 0.93424 0.94096 0.93809 0.96301 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 8.72 37.16 0.32 -0.32 16 2 C 0.17 0.91 1.23 -131.81 -0.16 0.74 16 3 C -0.16 -0.46 8.28 37.16 0.31 -0.15 16 4 C -0.15 -0.86 8.04 37.16 0.30 -0.56 16 5 N -0.29 -2.76 3.17 -49.83 -0.16 -2.92 16 6 C 0.19 1.71 11.71 -90.48 -1.06 0.65 16 7 N -0.48 -6.20 11.09 -12.36 -0.14 -6.34 16 8 C 0.14 2.10 7.96 -156.35 -1.24 0.85 16 9 C 0.61 10.11 7.83 -12.32 -0.10 10.02 16 10 O -0.53 -10.12 17.09 5.32 0.09 -10.03 16 11 N -0.70 -10.59 5.45 -61.24 -0.33 -10.92 16 12 C 0.13 2.07 5.12 -4.04 -0.02 2.05 16 13 C -0.12 -2.03 3.07 -88.47 -0.27 -2.31 16 14 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 15 C -0.13 -2.50 6.42 -24.90 -0.16 -2.66 16 16 C 0.18 4.34 5.38 -3.07 -0.02 4.32 16 17 N -0.61 -15.77 3.40 -170.04 -0.58 -16.34 16 18 C -0.23 -6.45 10.26 -15.06 -0.15 -6.61 16 19 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 20 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 21 N -0.92 -27.46 10.36 55.49 0.57 -26.88 16 22 Si 0.91 22.41 29.56 -169.99 -5.02 17.38 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.14 2.95 6.56 -2.50 -0.02 2.93 16 27 N -0.25 -3.37 11.09 32.07 0.36 -3.01 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.12 7.34 -51.93 -0.38 -0.26 16 34 H 0.08 0.59 8.03 -51.93 -0.42 0.17 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.22 0.94 7.53 -52.49 -0.40 0.54 16 38 H 0.41 5.87 8.14 -40.82 -0.33 5.54 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 43 H 0.05 1.29 7.30 -51.93 -0.38 0.91 16 44 H 0.04 1.11 7.61 -51.93 -0.40 0.72 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.02 0.41 7.95 -51.93 -0.41 -0.01 16 47 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -35.86 384.27 -9.53 -45.39 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.74 Total: -0.73 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -2.37 Total: 8.61 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -0.28 Total: -66.41 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.86 -9.53 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028802415.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.751 kcal (2) G-P(sol) polarization free energy of solvation -35.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds