Wall clock time and date at job start Tue Mar 31 2020 12:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46640 * 2 1 4 4 H 1.09000 * 109.52819 * 55.07992 * 3 2 1 5 5 C 1.53193 * 109.50212 * 294.99586 * 3 2 1 6 6 N 1.46916 * 108.77939 * 185.41629 * 5 3 2 7 7 C 1.34776 * 120.63438 * 233.63212 * 6 5 3 8 8 O 1.21563 * 119.99540 * 354.91747 * 7 6 5 9 9 C 1.47797 * 120.00395 * 174.92066 * 7 6 5 10 10 C 1.40924 * 127.23624 * 186.09188 * 9 7 6 11 11 N 1.31134 * 105.77605 * 179.97438 * 10 9 7 12 12 N 1.28513 * 109.05853 * 359.97438 * 11 10 9 13 13 C 1.46503 * 124.44635 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47150 * 89.97472 * 13 12 11 15 15 N 1.28594 * 111.11554 * 359.74245 * 12 11 10 16 16 C 1.46928 * 118.73789 * 53.60589 * 6 5 3 17 17 C 1.53190 * 108.77659 * 306.39313 * 16 6 5 18 18 C 1.53038 * 109.31498 * 54.63415 * 17 16 6 19 19 H 1.08992 * 109.45956 * 178.61112 * 18 17 16 20 20 N 1.46507 * 109.45864 * 58.65426 * 18 17 16 21 21 C 1.36933 * 120.00084 * 84.93031 * 20 18 17 22 22 H 1.07999 * 119.99740 * 0.02562 * 21 20 18 23 23 C 1.38808 * 120.00056 * 179.97438 * 21 20 18 24 24 N 1.31621 * 120.00345 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 120.00099 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47108 * 90.00079 * 25 23 21 27 27 H 1.48503 * 109.47260 * 210.00274 * 25 23 21 28 28 H 1.48504 * 109.46975 * 330.00317 * 25 23 21 29 29 H 1.09002 * 109.47122 * 60.00208 * 1 2 3 30 30 H 1.09000 * 109.46684 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47689 * 300.00062 * 1 2 3 32 32 H 1.08988 * 109.47238 * 239.99793 * 2 1 3 33 33 H 1.09002 * 109.46597 * 119.99800 * 2 1 3 34 34 H 1.09000 * 109.58102 * 305.20607 * 5 3 2 35 35 H 1.09007 * 109.58378 * 65.47987 * 5 3 2 36 36 H 1.08003 * 127.10981 * 359.95724 * 10 9 7 37 37 H 1.08993 * 109.47336 * 209.97973 * 13 12 11 38 38 H 1.09005 * 109.46711 * 329.97767 * 13 12 11 39 39 H 1.09008 * 109.47033 * 300.00256 * 14 13 12 40 40 H 1.08991 * 109.47211 * 60.00346 * 14 13 12 41 41 H 1.08997 * 109.47021 * 180.02562 * 14 13 12 42 42 H 1.09002 * 109.58564 * 66.17926 * 16 6 5 43 43 H 1.09007 * 109.58746 * 186.46414 * 16 6 5 44 44 H 1.09006 * 109.49223 * 174.58847 * 17 16 6 45 45 H 1.08997 * 109.49827 * 294.64588 * 17 16 6 46 46 H 0.97001 * 119.99792 * 264.94024 * 20 18 17 47 47 H 0.96998 * 120.00340 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6069 1.9820 0.8423 5 6 1.6350 2.1281 -1.3088 6 7 2.2414 3.4656 -1.3494 7 6 1.4814 4.5580 -1.5629 8 8 0.2987 4.4356 -1.8158 9 6 2.0859 5.9047 -1.4896 10 6 1.4194 7.1440 -1.5672 11 7 2.3526 8.0584 -1.4548 12 7 3.4923 7.4803 -1.3195 13 6 4.7667 8.1866 -1.1662 14 6 5.0388 8.4309 0.3195 15 7 3.3669 6.2006 -1.3304 16 6 3.6921 3.5899 -1.1521 17 6 4.0739 2.8881 0.1549 18 6 3.5655 1.4450 0.1219 19 1 3.8573 0.9361 1.0404 20 7 4.1480 0.7485 -1.0279 21 6 5.3861 0.1728 -0.9243 22 1 5.9330 0.2319 0.0051 23 6 5.9378 -0.4875 -2.0135 24 7 5.2711 -0.5599 -3.1461 25 14 7.6265 -1.2735 -1.8720 26 1 7.4820 -2.6772 -1.4097 27 1 8.2937 -1.2555 -3.1986 28 1 8.4464 -0.5125 -0.8952 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9908 1.5397 -2.1546 35 1 0.5494 2.2150 -1.3551 36 1 0.3592 7.3069 -1.6933 37 1 5.5699 7.5827 -1.5882 38 1 4.7176 9.1421 -1.6885 39 1 4.2355 9.0349 0.7415 40 1 5.0879 7.4756 0.8417 41 1 5.9867 8.9568 0.4335 42 1 4.2156 3.1208 -1.9852 43 1 3.9643 4.6440 -1.0964 44 1 5.1584 2.8894 0.2651 45 1 3.6222 3.4143 0.9958 46 1 3.6567 0.6954 -1.8626 47 1 5.6568 -1.0210 -3.9074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037840121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:52 Heat of formation + Delta-G solvation = 92.998507 kcal Electronic energy + Delta-G solvation = -28496.948225 eV Core-core repulsion = 24718.190674 eV Total energy + Delta-G solvation = -3778.757552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.73771 -39.86820 -37.73785 -35.07114 -34.49436 -33.71808 -32.65826 -31.63857 -30.63188 -29.33609 -28.46737 -25.93700 -24.60741 -23.86209 -23.49980 -23.09283 -21.62139 -20.71974 -19.93830 -18.37937 -17.60360 -17.25218 -16.72011 -16.65767 -15.78310 -15.20364 -14.95233 -14.65096 -14.45281 -14.31018 -13.91360 -13.67973 -13.26939 -13.20625 -13.12281 -12.91251 -12.57000 -12.52386 -12.27047 -12.02899 -11.81294 -11.72045 -11.38202 -11.22913 -11.02814 -10.85453 -10.75076 -10.51863 -10.38640 -10.24931 -10.16007 -10.04390 -9.75965 -9.66215 -9.51412 -9.50093 -8.86783 -8.17348 -6.93972 -5.76639 -3.04589 1.30296 1.91007 1.99617 3.22780 3.40601 3.42215 3.47795 3.49283 3.85798 4.46973 4.48387 4.59087 4.75657 4.78830 4.96035 5.13484 5.23031 5.31583 5.32552 5.41093 5.57633 5.60251 5.63912 5.67186 5.69762 5.73474 5.86083 5.87335 5.92569 6.01341 6.14821 6.21634 6.25667 6.38748 6.42386 6.48436 6.59281 6.68226 6.72023 6.81575 6.89816 7.00431 7.09241 7.69745 7.70556 8.06642 8.35517 8.41892 9.53460 10.10976 10.46198 11.45856 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.011349 B = 0.004311 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.619044 B = 6494.017498 C = 8162.934761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.582 5.582 7 C 0.600 3.400 8 O -0.543 6.543 9 C -0.034 4.034 10 C 0.030 3.970 11 N -0.292 5.292 12 N -0.146 5.146 13 C 0.131 3.869 14 C -0.171 4.171 15 N -0.242 5.242 16 C 0.083 3.917 17 C -0.145 4.145 18 C 0.177 3.823 19 H 0.049 0.951 20 N -0.718 5.718 21 C -0.235 4.235 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.903 3.097 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.206 0.794 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.121 0.879 44 H 0.072 0.928 45 H 0.044 0.956 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 15.975 6.303 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.312 5.312 7 C 0.385 3.615 8 O -0.420 6.420 9 C -0.196 4.196 10 C -0.153 4.153 11 N -0.131 5.131 12 N -0.049 5.049 13 C 0.012 3.988 14 C -0.230 4.230 15 N -0.089 5.089 16 C -0.040 4.040 17 C -0.186 4.186 18 C 0.067 3.933 19 H 0.067 0.933 20 N -0.360 5.360 21 C -0.366 4.366 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.734 3.266 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.209 1.209 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.223 0.777 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.514 16.499 6.341 18.022 hybrid contribution 0.254 -0.949 -0.330 1.036 sum -3.260 15.550 6.011 16.988 Atomic orbital electron populations 1.21859 0.96810 1.01039 1.01377 1.21415 0.94271 0.95687 1.03394 1.21750 0.97502 0.96115 0.96902 0.91591 1.21756 0.98740 0.81242 0.98544 1.47967 1.09291 1.05924 1.68049 1.16773 0.85366 0.81627 0.77721 1.90766 1.15110 1.85727 1.50382 1.23209 0.89451 0.96958 1.10002 1.24771 1.00754 0.87145 1.02655 1.73949 0.92100 1.27925 1.19153 1.48530 1.07475 1.01637 1.47221 1.22109 0.79201 0.97717 0.99822 1.22190 1.03333 1.03656 0.93790 1.74294 1.19754 0.97580 1.17310 1.22626 0.78048 1.04060 0.99297 1.22467 1.01531 0.98861 0.95736 1.20246 0.89707 0.90867 0.92498 0.93268 1.42463 1.19006 1.63968 1.10586 1.19210 0.93610 1.26794 0.97021 0.91325 1.24684 0.98477 1.01566 0.96035 1.69648 1.38074 1.48113 1.02241 0.86256 0.84350 0.79367 0.76582 1.21864 1.21948 1.20910 0.92713 0.93171 0.93391 0.90442 0.92030 0.90461 0.89458 0.77706 0.86928 0.87199 0.91449 0.91094 0.89457 0.90118 0.86281 0.90976 0.93734 0.78112 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.73 16 2 C -0.11 -1.76 5.19 -26.73 -0.14 -1.90 16 3 C -0.10 -1.70 2.14 -90.50 -0.19 -1.90 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 2.07 5.01 -3.72 -0.02 2.05 16 6 N -0.58 -10.09 2.97 -173.90 -0.52 -10.60 16 7 C 0.60 10.37 7.70 -12.35 -0.10 10.28 16 8 O -0.54 -10.31 16.40 5.31 0.09 -10.22 16 9 C -0.03 -0.51 6.95 -82.68 -0.57 -1.08 16 10 C 0.03 0.39 12.05 -16.83 -0.20 0.19 16 11 N -0.29 -3.64 12.01 30.90 0.37 -3.27 16 12 N -0.15 -1.73 3.94 -10.61 -0.04 -1.77 16 13 C 0.13 0.95 7.24 -4.04 -0.03 0.92 16 14 C -0.17 -1.06 10.24 37.16 0.38 -0.68 16 15 N -0.24 -3.42 8.50 33.42 0.28 -3.14 16 16 C 0.08 1.44 6.08 -3.71 -0.02 1.41 16 17 C -0.14 -2.51 5.78 -26.61 -0.15 -2.66 16 18 C 0.18 3.35 2.53 -67.89 -0.17 3.18 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.72 -16.60 3.72 -53.39 -0.20 -16.80 16 21 C -0.24 -6.14 9.93 -15.06 -0.15 -6.29 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 25 Si 0.90 21.81 29.55 -169.99 -5.02 16.78 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.05 0.75 6.69 -51.93 -0.35 0.40 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.45 7.69 -51.94 -0.40 1.05 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.48 6.64 -51.93 -0.34 1.14 16 35 H 0.09 1.48 5.75 -51.92 -0.30 1.18 16 36 H 0.21 2.15 8.06 -52.48 -0.42 1.72 16 37 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 1.64 7.74 -51.93 -0.40 1.24 16 43 H 0.12 1.92 3.73 -109.12 -0.41 1.51 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.38 9.55 5.94 -40.82 -0.24 9.30 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -31.33 373.51 -7.27 -38.61 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -7.48 Total: 9.88 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.11 Total: 1.35 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.62 Total: -62.03 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.33 -7.27 -38.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037840121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.606 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds