Wall clock time and date at job start Tue Mar 31 2020 12:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47078 * 2 1 4 4 H 1.08997 * 109.46687 * 55.00021 * 3 2 1 5 5 C 1.53001 * 109.46861 * 295.00084 * 3 2 1 6 6 C 1.50697 * 109.46948 * 175.00459 * 3 2 1 7 7 O 1.21275 * 120.00315 * 28.59075 * 6 3 2 8 8 N 1.34784 * 119.99424 * 208.59057 * 6 3 2 9 9 C 1.47022 * 125.64909 * 4.27508 * 8 6 3 10 10 C 1.54332 * 107.26402 * 178.84745 * 9 8 6 11 11 C 1.55164 * 103.01978 * 338.13696 * 10 9 8 12 12 H 1.09001 * 111.00189 * 277.23108 * 11 10 9 13 13 N 1.46497 * 111.00404 * 153.38516 * 11 10 9 14 14 C 1.35314 * 125.86739 * 332.51733 * 13 11 10 15 15 C 1.35353 * 106.17659 * 179.90671 * 14 13 11 16 16 C 1.50701 * 126.75165 * 180.12452 * 15 14 13 17 17 N 1.46505 * 109.47084 * 95.29609 * 16 15 14 18 18 C 1.36935 * 119.99989 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99983 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00009 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00065 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00098 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47417 * 89.99812 * 22 20 18 24 24 H 1.48503 * 109.47325 * 210.00584 * 22 20 18 25 25 H 1.48503 * 109.47029 * 330.00002 * 22 20 18 26 26 N 1.33775 * 106.49347 * 0.34829 * 15 14 13 27 27 N 1.28635 * 108.88731 * 359.77637 * 26 15 14 28 28 C 1.47423 * 125.64475 * 184.57465 * 8 6 3 29 29 H 1.08997 * 109.46795 * 299.99888 * 1 2 3 30 30 H 1.09006 * 109.46674 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47363 * 59.99934 * 1 2 3 32 32 H 1.08997 * 109.47363 * 120.00066 * 2 1 3 33 33 H 1.09005 * 109.46835 * 240.00418 * 2 1 3 34 34 H 1.09007 * 109.47161 * 60.79133 * 5 3 2 35 35 H 1.09007 * 109.47046 * 180.78306 * 5 3 2 36 36 H 1.08998 * 109.47412 * 300.78761 * 5 3 2 37 37 H 1.09003 * 109.87752 * 298.38490 * 9 8 6 38 38 H 1.08999 * 109.88649 * 59.55391 * 9 8 6 39 39 H 1.09000 * 110.84910 * 219.66963 * 10 9 8 40 40 H 1.09001 * 110.51937 * 96.44870 * 10 9 8 41 41 H 1.08003 * 126.91271 * 0.02562 * 14 13 11 42 42 H 1.08997 * 109.46577 * 215.29299 * 16 15 14 43 43 H 1.08993 * 109.47297 * 335.29517 * 16 15 14 44 44 H 0.97003 * 119.99750 * 0.02562 * 17 16 15 45 45 H 0.97004 * 119.99892 * 179.97438 * 21 20 18 46 46 H 1.09001 * 110.36928 * 322.93278 * 28 8 6 47 47 H 1.08999 * 110.36539 * 85.14645 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1237 7 8 4.1864 0.5086 -0.3004 8 7 4.1688 2.4858 0.7058 9 6 3.5098 3.6375 1.3390 10 6 4.6214 4.5553 1.8901 11 6 5.8319 3.5944 2.0276 12 1 5.7814 3.0334 2.9608 13 7 7.0972 4.3257 1.9250 14 6 7.2919 5.4821 1.2499 15 6 8.5958 5.8031 1.4200 16 6 9.3074 7.0096 0.8642 17 7 9.3235 8.0738 1.8710 18 6 9.9208 9.2735 1.5897 19 1 10.3804 9.4350 0.6258 20 6 9.9366 10.2816 2.5438 21 7 10.5111 11.4345 2.2736 22 14 9.1423 10.0020 4.2112 23 1 10.1461 9.4390 5.1496 24 1 8.6380 11.2939 4.7422 25 1 8.0111 9.0507 4.0673 26 7 9.1297 4.8359 2.1744 27 7 8.2158 3.9758 2.4568 28 6 5.6290 2.6619 0.8074 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 0.5483 2.1377 -1.3902 35 1 2.0105 3.1499 -1.3134 36 1 2.0582 1.5794 -2.1499 37 1 2.9141 4.1753 0.6014 38 1 2.8734 3.2974 2.1560 39 1 4.3412 4.9640 2.8610 40 1 4.8422 5.3549 1.1830 41 1 6.5548 6.0383 0.6898 42 1 10.3310 6.7399 0.6042 43 1 8.7866 7.3602 -0.0267 44 1 8.9117 7.9283 2.7371 45 1 10.5218 12.1391 2.9402 46 1 6.1159 1.7019 0.9786 47 1 6.0187 3.1282 -0.0975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098618730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:45 Heat of formation + Delta-G solvation = 52.197134 kcal Electronic energy + Delta-G solvation = -26765.308979 eV Core-core repulsion = 22984.782147 eV Total energy + Delta-G solvation = -3780.526832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.38131 -41.42768 -39.09863 -37.00711 -36.42046 -35.28257 -33.84839 -32.15012 -31.82644 -30.78571 -29.83988 -27.92971 -26.60609 -25.16964 -24.45192 -23.90063 -22.35069 -22.21331 -21.63807 -20.04115 -19.89541 -18.66552 -18.30330 -17.44433 -16.94799 -16.54277 -16.40869 -16.12439 -16.00029 -15.64377 -15.44889 -14.97138 -14.77613 -14.54456 -14.40220 -14.24275 -14.05167 -13.82999 -13.45974 -13.45292 -13.14970 -13.02087 -12.89183 -12.85777 -12.64982 -12.61420 -12.52834 -12.11256 -12.05863 -11.86531 -11.80187 -11.71349 -11.62185 -11.18025 -11.01307 -10.83881 -10.31269 -9.87043 -9.31582 -8.01341 -5.35135 0.50069 1.08586 1.34792 1.39704 1.42080 1.47582 1.48111 1.90251 2.48786 2.93021 3.14998 3.28382 3.34680 3.53359 3.63389 3.79265 3.80747 3.82406 3.92049 3.97497 4.05090 4.21202 4.26207 4.36607 4.48283 4.49877 4.54778 4.58347 4.63757 4.73410 4.76557 4.83343 4.90835 4.93534 4.97118 5.07339 5.08335 5.12566 5.14073 5.18400 5.35636 5.48397 5.59275 5.76229 6.21827 6.29834 6.99251 7.06442 7.43503 7.80987 8.01137 9.19666 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.002291 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.149903 B =12216.525973 C =12553.031770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.097 4.097 4 H 0.123 0.877 5 C -0.141 4.141 6 C 0.529 3.471 7 O -0.586 6.586 8 N -0.616 5.616 9 C 0.101 3.899 10 C -0.135 4.135 11 C 0.129 3.871 12 H 0.137 0.863 13 N -0.277 5.277 14 C -0.012 4.012 15 C -0.040 4.040 16 C 0.239 3.761 17 N -0.751 5.751 18 C -0.231 4.231 19 H 0.066 0.934 20 C -0.060 4.060 21 N -0.980 5.980 22 Si 0.952 3.048 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.254 1.254 26 N -0.295 5.295 27 N -0.110 5.110 28 C 0.103 3.897 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.232 0.768 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.363 0.637 45 H 0.258 0.742 46 H 0.070 0.930 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.415 -21.057 -3.505 36.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.118 4.118 4 H 0.141 0.859 5 C -0.198 4.198 6 C 0.320 3.680 7 O -0.466 6.466 8 N -0.351 5.351 9 C -0.021 4.021 10 C -0.173 4.173 11 C 0.026 3.974 12 H 0.155 0.845 13 N -0.070 5.070 14 C -0.163 4.163 15 C -0.178 4.178 16 C 0.111 3.889 17 N -0.397 5.397 18 C -0.362 4.362 19 H 0.084 0.916 20 C -0.251 4.251 21 N -0.630 5.630 22 Si 0.780 3.220 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.179 1.179 26 N -0.162 5.162 27 N -0.089 5.089 28 C -0.022 4.022 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.140 0.860 40 H 0.123 0.877 41 H 0.248 0.752 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.196 0.804 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -28.299 -22.562 -3.030 36.319 hybrid contribution 0.110 0.702 0.365 0.799 sum -28.189 -21.860 -2.665 35.771 Atomic orbital electron populations 1.21803 0.93186 1.02453 1.03076 1.21387 0.97373 0.94126 1.01870 1.21393 0.88051 0.99673 1.02672 0.85922 1.21795 1.03639 1.00322 0.94065 1.21230 0.91583 0.79656 0.75540 1.90711 1.69189 1.36320 1.50348 1.48487 1.05926 1.22691 1.57973 1.22409 0.95343 0.85151 0.99161 1.23249 0.90817 0.97420 1.05839 1.22998 0.78668 0.94386 1.01302 0.84479 1.47365 1.09870 1.16964 1.32827 1.23788 0.98869 0.90847 1.02826 1.22268 0.93693 0.98869 1.03007 1.18920 0.97038 0.81684 0.91215 1.42651 1.69545 1.12336 1.15197 1.19041 1.27580 0.89690 0.99880 0.91572 1.25416 1.01989 0.95785 1.01942 1.69865 1.51147 1.05778 1.36236 0.85453 0.79014 0.76979 0.80543 1.21596 1.21595 1.17883 1.75071 1.24121 1.02341 1.14619 1.78240 0.88990 1.21812 1.19815 1.22287 0.83234 0.99670 0.97023 0.91249 0.92481 0.91364 0.92818 0.92992 0.88760 0.91105 0.93749 0.87415 0.87657 0.85970 0.87725 0.75161 0.94962 0.91246 0.80425 0.93267 0.91118 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 71.98 0.70 -0.15 16 2 C -0.11 -1.19 4.89 30.60 0.15 -1.04 16 3 C -0.10 -0.83 2.33 -11.54 -0.03 -0.86 16 4 H 0.12 0.31 7.13 -2.39 -0.02 0.29 16 5 C -0.14 -0.92 8.91 71.98 0.64 -0.28 16 6 C 0.53 8.73 6.92 87.65 0.61 9.33 16 7 O -0.59 -15.84 16.49 -3.01 -0.05 -15.89 16 8 N -0.62 -7.38 3.33 -811.79 -2.70 -10.08 16 9 C 0.10 0.31 6.10 86.73 0.53 0.84 16 10 C -0.13 -0.71 6.31 31.79 0.20 -0.51 16 11 C 0.13 1.72 4.12 46.39 0.19 1.91 16 12 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 13 N -0.28 -6.31 3.40 -320.58 -1.09 -7.40 16 14 C -0.01 -0.28 10.60 83.49 0.89 0.61 16 15 C -0.04 -1.35 6.62 41.60 0.28 -1.07 16 16 C 0.24 9.26 6.82 85.63 0.58 9.84 16 17 N -0.75 -35.72 5.40 -347.18 -1.87 -37.60 16 18 C -0.23 -13.16 10.47 84.03 0.88 -12.28 16 19 H 0.07 4.05 8.06 -2.91 -0.02 4.02 16 20 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 21 N -0.98 -62.51 13.97 21.65 0.30 -62.21 16 22 Si 0.95 46.10 27.73 68.60 1.90 48.00 16 23 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 26 N -0.29 -11.18 12.41 -48.60 -0.60 -11.79 16 27 N -0.11 -3.55 13.17 37.02 0.49 -3.06 16 28 C 0.10 1.63 6.62 86.85 0.58 2.20 16 29 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.07 0.28 6.58 -2.39 -0.02 0.26 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.79 8.02 -2.38 -0.02 0.77 16 34 H 0.09 0.25 6.60 -2.38 -0.02 0.24 16 35 H 0.07 0.33 7.96 -2.38 -0.02 0.31 16 36 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.11 -0.09 7.96 -2.39 -0.02 -0.11 16 38 H 0.11 -0.11 7.89 -2.39 -0.02 -0.13 16 39 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.10 0.46 6.24 -2.39 -0.01 0.44 16 41 H 0.23 3.30 6.82 -2.91 -0.02 3.28 16 42 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.36 17.04 5.52 -92.71 -0.51 16.53 16 45 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 46 H 0.07 1.47 8.00 -2.39 -0.02 1.45 16 47 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -84.19 380.87 3.43 -80.76 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.40 Total: 13.77 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 6.65 Total: 5.50 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -5.48 Total: -132.14 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.05 Total: -15.89 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.00 kcal Total: -84.19 3.43 -80.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098618730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.955 kcal (2) G-P(sol) polarization free energy of solvation -84.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds