Wall clock time and date at job start Tue Mar 31 2020 12:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47305 * 2 1 4 4 H 1.09004 * 109.46782 * 305.00448 * 3 2 1 5 5 C 1.53003 * 109.47000 * 65.00022 * 3 2 1 6 6 C 1.50694 * 109.47227 * 184.99909 * 3 2 1 7 7 O 1.21279 * 120.00425 * 327.58710 * 6 3 2 8 8 N 1.34782 * 119.99916 * 147.58932 * 6 3 2 9 9 C 1.47021 * 125.64837 * 5.11783 * 8 6 3 10 10 C 1.54327 * 107.27236 * 181.02208 * 9 8 6 11 11 C 1.55166 * 102.93812 * 22.19244 * 10 9 8 12 12 H 1.08997 * 111.00094 * 82.61211 * 11 10 9 13 13 N 1.46502 * 110.99920 * 206.42068 * 11 10 9 14 14 C 1.35305 * 125.87123 * 33.55641 * 13 11 10 15 15 C 1.35349 * 106.17732 * 179.97438 * 14 13 11 16 16 C 1.50703 * 126.75330 * 179.97438 * 15 14 13 17 17 N 1.46502 * 109.47077 * 94.99232 * 16 15 14 18 18 C 1.36938 * 119.99892 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99720 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00112 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00236 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46695 * 60.00090 * 22 20 18 24 24 H 1.48503 * 109.47014 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46710 * 300.00129 * 22 20 18 26 26 N 1.33772 * 106.49495 * 359.97438 * 15 14 13 27 27 N 1.28635 * 108.88802 * 359.74175 * 26 15 14 28 28 C 1.47429 * 125.64841 * 184.81071 * 8 6 3 29 29 H 1.08996 * 109.47165 * 300.00074 * 1 2 3 30 30 H 1.09004 * 109.46785 * 59.99622 * 1 2 3 31 31 H 1.08997 * 109.47346 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47165 * 239.99926 * 2 1 3 33 33 H 1.08997 * 109.47115 * 120.00171 * 2 1 3 34 34 H 1.08997 * 109.46915 * 172.94764 * 5 3 2 35 35 H 1.08994 * 109.47474 * 52.94242 * 5 3 2 36 36 H 1.09000 * 109.46946 * 292.94201 * 5 3 2 37 37 H 1.08999 * 109.88276 * 300.44312 * 9 8 6 38 38 H 1.09000 * 109.87944 * 61.45284 * 9 8 6 39 39 H 1.09003 * 110.71987 * 140.55421 * 10 9 8 40 40 H 1.09001 * 110.72043 * 263.83286 * 10 9 8 41 41 H 1.08009 * 126.91208 * 0.02562 * 14 13 11 42 42 H 1.08995 * 109.47234 * 214.98928 * 16 15 14 43 43 H 1.09004 * 109.46870 * 334.99849 * 16 15 14 44 44 H 0.96999 * 120.00120 * 0.02562 * 17 16 15 45 45 H 0.96998 * 120.00055 * 179.97438 * 21 20 18 46 46 H 1.09003 * 110.36790 * 274.74857 * 28 8 6 47 47 H 1.09003 * 110.36334 * 37.06659 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1915 0.5424 0.3614 8 7 4.1633 2.4483 -0.7738 9 6 3.5132 3.6511 -1.3141 10 6 4.6099 4.4997 -1.9915 11 6 5.7208 3.4581 -2.2893 12 1 5.5122 2.9178 -3.2127 13 7 7.0382 4.0966 -2.3440 14 6 7.4365 5.1573 -1.6043 15 6 8.7135 5.4148 -1.9714 16 6 9.6037 6.5056 -1.4341 17 7 10.4344 5.9698 -0.3528 18 6 11.3283 6.7831 0.2912 19 1 11.4206 7.8196 0.0022 20 6 12.1149 6.2755 1.3160 21 7 12.0014 5.0126 1.6692 22 14 13.3339 7.3851 2.1951 23 1 12.6075 8.5159 2.8267 24 1 14.0452 6.6080 3.2416 25 1 14.3173 7.9137 1.2160 26 7 9.0300 4.5106 -2.9050 27 7 8.0180 3.7406 -3.0990 28 6 5.6085 2.5252 -1.0551 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 2.1030 3.1095 1.3630 35 1 1.9630 1.5199 2.1515 36 1 0.5515 2.2376 1.3389 37 1 2.7585 3.3669 -2.0475 38 1 3.0499 4.2168 -0.5058 39 1 4.2390 4.9429 -2.9156 40 1 4.9757 5.2701 -1.3126 41 1 6.8530 5.6906 -0.8683 42 1 10.2441 6.8787 -2.2333 43 1 8.9892 7.3201 -1.0505 44 1 10.3517 5.0387 -0.0936 45 1 12.5514 4.6579 2.3851 46 1 6.1384 2.9527 -0.2039 47 1 6.0023 1.5363 -1.2904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098618731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:49 Heat of formation + Delta-G solvation = 75.015549 kcal Electronic energy + Delta-G solvation = -26795.400104 eV Core-core repulsion = 23015.862753 eV Total energy + Delta-G solvation = -3779.537351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.07324 -40.67957 -38.31798 -35.80893 -35.07299 -34.02927 -31.96703 -31.06550 -30.33002 -29.92619 -29.06761 -26.07006 -25.82733 -24.41636 -23.19287 -22.74550 -21.67721 -20.90235 -20.60930 -19.39835 -17.92584 -17.64248 -17.02374 -16.30918 -15.91306 -15.69360 -15.42255 -14.87331 -14.69385 -14.53192 -14.18990 -14.04008 -13.69888 -13.50675 -13.40274 -13.15108 -12.86987 -12.71221 -12.62494 -12.50419 -12.23024 -12.17181 -12.02881 -11.92788 -11.52800 -11.25737 -11.24994 -11.13852 -10.88787 -10.78271 -10.46972 -10.14501 -10.10230 -9.88463 -9.71242 -9.17446 -8.88752 -8.84620 -6.90628 -5.71935 -3.02098 1.71939 2.05050 2.24292 2.66585 2.88522 3.47462 3.51677 3.53201 3.64069 3.82011 4.12890 4.20550 4.29062 4.34822 4.46928 4.56754 4.64177 4.74577 4.79022 4.91850 4.96015 5.01174 5.06257 5.11985 5.20450 5.24389 5.31639 5.32989 5.39867 5.41653 5.49252 5.57125 5.59556 5.63098 5.68113 5.80167 5.82128 5.90641 6.18143 6.38199 6.63842 6.71630 6.77627 6.98622 7.71866 7.75063 8.45018 8.80108 9.56609 10.12171 10.47925 11.50620 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.002436 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.814051 B =11492.574996 C =12421.243069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.091 0.909 5 C -0.143 4.143 6 C 0.535 3.465 7 O -0.528 6.528 8 N -0.621 5.621 9 C 0.104 3.896 10 C -0.141 4.141 11 C 0.136 3.864 12 H 0.129 0.871 13 N -0.293 5.293 14 C -0.044 4.044 15 C -0.002 4.002 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 N -0.251 5.251 27 N -0.092 5.092 28 C 0.099 3.901 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.187 0.813 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.084 0.916 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.553 -4.157 -6.672 30.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.109 0.891 5 C -0.200 4.200 6 C 0.324 3.676 7 O -0.403 6.403 8 N -0.357 5.357 9 C -0.020 4.020 10 C -0.180 4.180 11 C 0.032 3.968 12 H 0.147 0.853 13 N -0.087 5.087 14 C -0.194 4.194 15 C -0.139 4.139 16 C 0.103 3.897 17 N -0.371 5.371 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.741 3.259 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 N -0.118 5.118 27 N -0.070 5.070 28 C -0.026 4.026 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.204 0.796 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.102 0.898 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -28.664 -5.582 -7.396 30.125 hybrid contribution 0.252 0.993 1.405 1.739 sum -28.412 -4.589 -5.991 29.398 Atomic orbital electron populations 1.21816 0.95084 1.02095 1.01956 1.21418 0.95844 0.93905 1.03545 1.21331 0.90762 0.99564 1.00870 0.89110 1.21774 1.02127 1.00463 0.95658 1.20512 0.90217 0.80147 0.76761 1.90752 1.67488 1.35965 1.46126 1.48417 1.08040 1.21240 1.57977 1.22072 0.95670 0.85684 0.98539 1.23126 0.94182 0.97640 1.03062 1.22640 0.78304 0.94658 1.01215 0.85290 1.47030 1.11879 1.22047 1.27733 1.23277 0.98393 0.95018 1.02668 1.22481 0.93631 1.00351 0.97445 1.18956 0.90422 0.89247 0.91047 1.42300 1.44701 1.11741 1.38321 1.19174 1.13152 0.93103 1.11797 0.90928 1.24773 1.00323 0.96234 0.99583 1.69675 1.43216 1.12766 1.32317 0.86230 0.81129 0.79400 0.79174 1.21250 1.21736 1.21169 1.75116 1.17686 1.03507 1.15491 1.78309 0.91800 1.21320 1.15612 1.22558 0.82442 1.01231 0.96328 0.92267 0.92694 0.92313 0.91659 0.90606 0.92216 0.91560 0.90981 0.90308 0.90082 0.88059 0.88546 0.79553 0.94285 0.94485 0.78090 0.93427 0.89828 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.67 37.16 0.36 -0.35 16 2 C -0.11 -0.75 4.94 -26.73 -0.13 -0.88 16 3 C -0.10 -0.68 2.31 -91.77 -0.21 -0.89 16 4 H 0.09 0.39 6.99 -51.93 -0.36 0.03 16 5 C -0.14 -0.81 8.76 37.16 0.33 -0.48 16 6 C 0.53 5.49 6.87 -10.99 -0.08 5.42 16 7 O -0.53 -7.87 16.62 5.56 0.09 -7.78 16 8 N -0.62 -5.32 3.33 -170.38 -0.57 -5.89 16 9 C 0.10 0.48 6.23 -3.06 -0.02 0.46 16 10 C -0.14 -0.75 6.38 -24.89 -0.16 -0.91 16 11 C 0.14 1.21 4.09 -65.66 -0.27 0.94 16 12 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 13 N -0.29 -3.98 3.37 -52.57 -0.18 -4.15 16 14 C -0.04 -0.64 10.59 -17.05 -0.18 -0.82 16 15 C 0.00 -0.03 6.62 -82.78 -0.55 -0.58 16 16 C 0.23 4.87 6.82 -5.19 -0.04 4.83 16 17 N -0.73 -19.11 5.59 -61.08 -0.34 -19.45 16 18 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16 22 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 N -0.25 -5.10 12.41 33.29 0.41 -4.69 16 27 N -0.09 -1.62 13.17 60.35 0.79 -0.82 16 28 C 0.10 1.04 6.58 -2.41 -0.02 1.02 16 29 H 0.06 0.24 6.73 -51.93 -0.35 -0.10 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.64 8.01 -51.93 -0.42 0.22 16 34 H 0.06 0.32 8.02 -51.93 -0.42 -0.09 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.28 6.92 -51.93 -0.36 -0.08 16 37 H 0.08 0.21 7.63 -51.93 -0.40 -0.19 16 38 H 0.08 0.28 8.03 -51.93 -0.42 -0.13 16 39 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.53 6.39 -51.93 -0.33 0.20 16 41 H 0.19 2.08 7.03 -52.48 -0.37 1.71 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.39 11.01 7.66 -40.82 -0.31 10.69 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -36.98 384.68 -7.00 -43.97 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.50 Total: 3.39 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.21 Total: 0.29 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.85 Total: -63.34 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.98 -7.00 -43.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098618731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.990 kcal (2) G-P(sol) polarization free energy of solvation -36.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds