Wall clock time and date at job start Tue Mar 31 2020 12:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47305 * 2 1 4 4 H 1.09004 * 109.46782 * 305.00448 * 3 2 1 5 5 C 1.53003 * 109.47000 * 65.00022 * 3 2 1 6 6 C 1.50694 * 109.47227 * 184.99909 * 3 2 1 7 7 O 1.21279 * 120.00425 * 327.58710 * 6 3 2 8 8 N 1.34782 * 119.99916 * 147.58932 * 6 3 2 9 9 C 1.47021 * 125.64837 * 5.11783 * 8 6 3 10 10 C 1.54327 * 107.27236 * 181.02208 * 9 8 6 11 11 C 1.55166 * 102.93812 * 22.19244 * 10 9 8 12 12 H 1.08997 * 111.00094 * 82.61211 * 11 10 9 13 13 N 1.46502 * 110.99920 * 206.42068 * 11 10 9 14 14 C 1.35305 * 125.87123 * 33.55641 * 13 11 10 15 15 C 1.35349 * 106.17732 * 179.97438 * 14 13 11 16 16 C 1.50703 * 126.75330 * 179.97438 * 15 14 13 17 17 N 1.46502 * 109.47077 * 94.99232 * 16 15 14 18 18 C 1.36938 * 119.99892 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99720 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00112 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00236 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46695 * 60.00090 * 22 20 18 24 24 H 1.48503 * 109.47014 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46710 * 300.00129 * 22 20 18 26 26 N 1.33772 * 106.49495 * 359.97438 * 15 14 13 27 27 N 1.28635 * 108.88802 * 359.74175 * 26 15 14 28 28 C 1.47429 * 125.64841 * 184.81071 * 8 6 3 29 29 H 1.08996 * 109.47165 * 300.00074 * 1 2 3 30 30 H 1.09004 * 109.46785 * 59.99622 * 1 2 3 31 31 H 1.08997 * 109.47346 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47165 * 239.99926 * 2 1 3 33 33 H 1.08997 * 109.47115 * 120.00171 * 2 1 3 34 34 H 1.08997 * 109.46915 * 172.94764 * 5 3 2 35 35 H 1.08994 * 109.47474 * 52.94242 * 5 3 2 36 36 H 1.09000 * 109.46946 * 292.94201 * 5 3 2 37 37 H 1.08999 * 109.88276 * 300.44312 * 9 8 6 38 38 H 1.09000 * 109.87944 * 61.45284 * 9 8 6 39 39 H 1.09003 * 110.71987 * 140.55421 * 10 9 8 40 40 H 1.09001 * 110.72043 * 263.83286 * 10 9 8 41 41 H 1.08009 * 126.91208 * 0.02562 * 14 13 11 42 42 H 1.08995 * 109.47234 * 214.98928 * 16 15 14 43 43 H 1.09004 * 109.46870 * 334.99849 * 16 15 14 44 44 H 0.96999 * 120.00120 * 0.02562 * 17 16 15 45 45 H 0.96998 * 120.00055 * 179.97438 * 21 20 18 46 46 H 1.09003 * 110.36790 * 274.74857 * 28 8 6 47 47 H 1.09003 * 110.36334 * 37.06659 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1915 0.5424 0.3614 8 7 4.1633 2.4483 -0.7738 9 6 3.5132 3.6511 -1.3141 10 6 4.6099 4.4997 -1.9915 11 6 5.7208 3.4581 -2.2893 12 1 5.5122 2.9178 -3.2127 13 7 7.0382 4.0966 -2.3440 14 6 7.4365 5.1573 -1.6043 15 6 8.7135 5.4148 -1.9714 16 6 9.6037 6.5056 -1.4341 17 7 10.4344 5.9698 -0.3528 18 6 11.3283 6.7831 0.2912 19 1 11.4206 7.8196 0.0022 20 6 12.1149 6.2755 1.3160 21 7 12.0014 5.0126 1.6692 22 14 13.3339 7.3851 2.1951 23 1 12.6075 8.5159 2.8267 24 1 14.0452 6.6080 3.2416 25 1 14.3173 7.9137 1.2160 26 7 9.0300 4.5106 -2.9050 27 7 8.0180 3.7406 -3.0990 28 6 5.6085 2.5252 -1.0551 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 2.1030 3.1095 1.3630 35 1 1.9630 1.5199 2.1515 36 1 0.5515 2.2376 1.3389 37 1 2.7585 3.3669 -2.0475 38 1 3.0499 4.2168 -0.5058 39 1 4.2390 4.9429 -2.9156 40 1 4.9757 5.2701 -1.3126 41 1 6.8530 5.6906 -0.8683 42 1 10.2441 6.8787 -2.2333 43 1 8.9892 7.3201 -1.0505 44 1 10.3517 5.0387 -0.0936 45 1 12.5514 4.6579 2.3851 46 1 6.1384 2.9527 -0.2039 47 1 6.0023 1.5363 -1.2904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098618731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:48 Heat of formation + Delta-G solvation = 48.108930 kcal Electronic energy + Delta-G solvation = -26796.566863 eV Core-core repulsion = 23015.862753 eV Total energy + Delta-G solvation = -3780.704110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.33421 -41.42272 -39.08641 -36.83224 -36.42114 -35.25186 -33.71694 -31.94903 -31.63600 -30.79326 -29.79677 -27.68030 -26.60838 -25.15023 -24.82510 -23.89384 -22.29754 -22.21370 -21.60495 -20.04629 -19.38708 -18.64847 -18.26082 -17.40839 -16.86717 -16.62302 -16.45108 -16.03348 -15.88467 -15.48330 -15.43763 -15.08754 -14.79345 -14.52969 -14.32014 -14.12756 -14.10615 -13.67456 -13.45137 -13.13578 -13.05727 -13.02950 -12.87441 -12.72549 -12.62775 -12.58910 -12.55986 -12.13740 -12.04523 -11.88145 -11.81926 -11.70393 -11.62183 -11.13688 -10.94894 -10.83169 -10.26021 -9.87229 -9.02788 -7.93536 -5.24410 0.51991 1.12504 1.42907 1.47982 1.50375 1.53559 1.59642 1.90969 2.59374 2.98048 3.15060 3.35383 3.42149 3.54110 3.63714 3.80089 3.85041 3.91806 3.97210 4.07563 4.20311 4.22807 4.26327 4.37354 4.48282 4.50753 4.57048 4.58665 4.64413 4.73290 4.78037 4.86413 4.92795 4.95445 4.96640 5.07507 5.11380 5.13884 5.18464 5.18709 5.35455 5.47945 5.50506 5.62877 6.25538 6.31120 6.99789 7.32161 7.47371 8.03954 8.29284 9.30235 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.002436 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.814051 B =11492.574996 C =12421.243069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.094 4.094 4 H 0.127 0.873 5 C -0.141 4.141 6 C 0.526 3.474 7 O -0.590 6.590 8 N -0.616 5.616 9 C 0.099 3.901 10 C -0.130 4.130 11 C 0.131 3.869 12 H 0.145 0.855 13 N -0.276 5.276 14 C -0.015 4.015 15 C -0.035 4.035 16 C 0.235 3.765 17 N -0.741 5.741 18 C -0.243 4.243 19 H 0.087 0.913 20 C -0.081 4.081 21 N -0.975 5.975 22 Si 0.981 3.019 23 H -0.270 1.270 24 H -0.300 1.300 25 H -0.278 1.278 26 N -0.296 5.296 27 N -0.111 5.111 28 C 0.098 3.902 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.227 0.773 42 H 0.030 0.970 43 H 0.067 0.933 44 H 0.369 0.631 45 H 0.250 0.750 46 H 0.061 0.939 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.025 -1.584 -7.297 33.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.115 4.115 4 H 0.145 0.855 5 C -0.198 4.198 6 C 0.317 3.683 7 O -0.469 6.469 8 N -0.351 5.351 9 C -0.022 4.022 10 C -0.168 4.168 11 C 0.029 3.971 12 H 0.162 0.838 13 N -0.070 5.070 14 C -0.166 4.166 15 C -0.174 4.174 16 C 0.107 3.893 17 N -0.383 5.383 18 C -0.374 4.374 19 H 0.105 0.895 20 C -0.273 4.273 21 N -0.626 5.626 22 Si 0.809 3.191 23 H -0.196 1.196 24 H -0.226 1.226 25 H -0.204 1.204 26 N -0.163 5.163 27 N -0.089 5.089 28 C -0.027 4.027 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.150 0.850 40 H 0.119 0.881 41 H 0.243 0.757 42 H 0.048 0.952 43 H 0.084 0.916 44 H 0.200 0.800 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -32.192 -2.951 -8.092 33.325 hybrid contribution 1.226 0.151 1.540 1.974 sum -30.966 -2.800 -6.552 31.776 Atomic orbital electron populations 1.21783 0.92891 1.02489 1.03171 1.21408 0.97626 0.94048 1.01782 1.21398 0.87632 0.99740 1.02749 0.85524 1.21795 1.03781 1.00102 0.94148 1.21364 0.91777 0.79442 0.75761 1.90723 1.68970 1.38437 1.48795 1.48510 1.07134 1.22221 1.57204 1.22457 0.95777 0.83970 1.00009 1.23237 0.92346 0.96560 1.04673 1.23062 0.77149 0.95943 1.00979 0.83772 1.47350 1.12495 1.21152 1.25996 1.23685 0.97082 0.94224 1.01654 1.22313 0.95240 1.00911 0.98888 1.19003 0.90366 0.90587 0.89322 1.42534 1.45369 1.10888 1.39527 1.19681 1.12695 0.93857 1.11163 0.89512 1.25690 1.02830 0.97678 1.01064 1.69866 1.44644 1.14898 1.33191 0.85105 0.78682 0.77642 0.77678 1.19561 1.22622 1.20379 1.75042 1.19440 1.04711 1.17106 1.78200 0.92352 1.21367 1.17011 1.22344 0.83989 1.00063 0.96306 0.91386 0.90993 0.92483 0.92789 0.93238 0.91508 0.93844 0.88374 0.86955 0.87792 0.85035 0.88122 0.75683 0.95191 0.91571 0.80010 0.94159 0.92051 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 71.98 0.70 -0.33 16 2 C -0.11 -1.44 4.94 30.60 0.15 -1.29 16 3 C -0.09 -1.02 2.31 -11.54 -0.03 -1.05 16 4 H 0.13 0.47 6.99 -2.38 -0.02 0.46 16 5 C -0.14 -1.26 8.76 71.98 0.63 -0.63 16 6 C 0.53 10.56 6.87 87.65 0.60 11.16 16 7 O -0.59 -18.71 16.62 -3.02 -0.05 -18.76 16 8 N -0.62 -9.52 3.33 -811.35 -2.70 -12.22 16 9 C 0.10 0.46 6.23 86.73 0.54 1.00 16 10 C -0.13 -0.78 6.38 31.79 0.20 -0.58 16 11 C 0.13 2.06 4.09 46.46 0.19 2.25 16 12 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 13 N -0.28 -7.15 3.37 -320.22 -1.08 -8.23 16 14 C -0.02 -0.41 10.59 83.49 0.88 0.47 16 15 C -0.04 -1.32 6.62 41.60 0.28 -1.04 16 16 C 0.23 9.75 6.82 85.63 0.58 10.33 16 17 N -0.74 -39.44 5.59 -347.17 -1.94 -41.38 16 18 C -0.24 -13.76 9.99 84.03 0.84 -12.92 16 19 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 20 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 21 N -0.98 -62.43 13.06 21.65 0.28 -62.14 16 22 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 N -0.30 -12.30 12.41 -48.60 -0.60 -12.90 16 27 N -0.11 -3.92 13.17 37.02 0.49 -3.43 16 28 C 0.10 2.06 6.58 86.93 0.57 2.63 16 29 H 0.07 0.37 6.73 -2.39 -0.02 0.35 16 30 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.89 8.01 -2.39 -0.02 0.87 16 34 H 0.07 0.51 8.02 -2.39 -0.02 0.49 16 35 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 0.39 6.92 -2.39 -0.02 0.37 16 37 H 0.11 -0.12 7.63 -2.39 -0.02 -0.14 16 38 H 0.10 0.13 8.03 -2.39 -0.02 0.11 16 39 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.10 0.59 6.39 -2.39 -0.02 0.57 16 41 H 0.23 4.18 7.03 -2.91 -0.02 4.16 16 42 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 44 H 0.37 21.74 7.66 -92.71 -0.71 21.03 16 45 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.07 1.74 8.09 -2.39 -0.02 1.72 16 Total: -1.00 -86.62 384.68 3.30 -83.32 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.26 Total: 21.09 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.61 Total: 5.70 kcal Atomic # 7 Polarization: -134.75 SS G_CDS: -5.55 Total: -140.30 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.05 Total: -18.76 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -86.62 3.30 -83.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098618731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.433 kcal (2) G-P(sol) polarization free energy of solvation -86.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds