Wall clock time and date at job start Tue Mar 31 2020 12:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46811 * 2 1 4 4 H 1.09001 * 109.46885 * 55.00104 * 3 2 1 5 5 C 1.53000 * 109.47122 * 294.99822 * 3 2 1 6 6 C 1.50696 * 109.46838 * 175.00026 * 3 2 1 7 7 O 1.21280 * 120.00077 * 31.59162 * 6 3 2 8 8 N 1.34781 * 120.00147 * 211.58994 * 6 3 2 9 9 C 1.47016 * 125.65010 * 185.12653 * 8 6 3 10 10 C 1.54324 * 107.27024 * 181.02288 * 9 8 6 11 11 C 1.55151 * 102.94339 * 22.19256 * 10 9 8 12 12 H 1.09004 * 111.00468 * 82.61274 * 11 10 9 13 13 N 1.46500 * 111.00705 * 206.42197 * 11 10 9 14 14 C 1.35311 * 125.86639 * 33.55037 * 13 11 10 15 15 C 1.35347 * 106.17490 * 180.02562 * 14 13 11 16 16 C 1.50711 * 126.75094 * 179.97438 * 15 14 13 17 17 N 1.46492 * 109.47232 * 94.99669 * 16 15 14 18 18 C 1.36942 * 120.00024 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99719 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99969 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00216 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47395 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47453 * 119.99803 * 22 20 18 25 25 H 1.48502 * 109.46885 * 239.99931 * 22 20 18 26 26 N 1.33765 * 106.49988 * 359.97438 * 15 14 13 27 27 N 1.28638 * 108.88516 * 359.74240 * 26 15 14 28 28 C 1.47422 * 125.64527 * 4.82081 * 8 6 3 29 29 H 1.09007 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47450 * 299.99660 * 1 2 3 31 31 H 1.09001 * 109.47376 * 60.00299 * 1 2 3 32 32 H 1.08999 * 109.46737 * 240.00139 * 2 1 3 33 33 H 1.08996 * 109.47259 * 120.00438 * 2 1 3 34 34 H 1.09002 * 109.46645 * 65.27285 * 5 3 2 35 35 H 1.09000 * 109.46611 * 185.26512 * 5 3 2 36 36 H 1.08992 * 109.47340 * 305.27530 * 5 3 2 37 37 H 1.08995 * 109.88591 * 300.44329 * 9 8 6 38 38 H 1.09000 * 109.88260 * 61.45110 * 9 8 6 39 39 H 1.08997 * 110.72220 * 140.56066 * 10 9 8 40 40 H 1.08998 * 110.72102 * 263.82914 * 10 9 8 41 41 H 1.08000 * 126.91469 * 359.97438 * 14 13 11 42 42 H 1.09001 * 109.46482 * 214.99946 * 16 15 14 43 43 H 1.09004 * 109.46781 * 334.99079 * 16 15 14 44 44 H 0.97000 * 120.00202 * 359.97438 * 17 16 15 45 45 H 0.97001 * 119.99909 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.36639 * 274.74715 * 28 8 6 47 47 H 1.09006 * 110.36938 * 37.06896 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5418 1.4444 0.1238 7 8 4.1903 0.5348 -0.3485 8 7 4.1644 2.4568 0.7594 9 6 5.6197 2.6393 0.8602 10 6 5.8649 3.9129 1.6965 11 6 4.5444 4.0626 2.4970 12 1 4.5516 3.4299 3.3846 13 7 4.3034 5.4625 2.8555 14 6 4.6437 6.5410 2.1126 15 6 4.2389 7.6252 2.8144 16 6 4.3906 9.0691 2.4103 17 7 3.1640 9.5231 1.7506 18 6 3.0686 10.8104 1.2934 19 1 3.8976 11.4911 1.4195 20 6 1.9061 11.2408 0.6687 21 7 0.8956 10.4115 0.5155 22 14 1.7758 12.9970 0.0457 23 1 3.0386 13.7213 0.3390 24 1 1.5401 12.9859 -1.4204 25 1 0.6450 13.6801 0.7238 26 7 3.6775 7.1630 3.9372 27 7 3.7263 5.8776 3.9286 28 6 3.4988 3.5680 1.4633 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.5493 2.2090 -1.3532 35 1 2.0772 3.1221 -1.3484 36 1 1.9906 1.5360 -2.1516 37 1 6.0679 1.7783 1.3560 38 1 6.0482 2.7582 -0.1349 39 1 6.7108 3.7751 2.3700 40 1 6.0231 4.7751 1.0487 41 1 5.1396 6.5375 1.1532 42 1 4.5731 9.6771 3.2965 43 1 5.2308 9.1676 1.7229 44 1 2.4196 8.9117 1.6370 45 1 0.0834 10.7121 0.0786 46 1 3.2480 4.3647 0.7629 47 1 2.6023 3.2124 1.9715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098618732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:52 Heat of formation + Delta-G solvation = 74.663174 kcal Electronic energy + Delta-G solvation = -27021.420459 eV Core-core repulsion = 23241.867828 eV Total energy + Delta-G solvation = -3779.552631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.11966 -40.67916 -38.32033 -35.75461 -35.08968 -34.00197 -32.03159 -31.35323 -29.99921 -29.85005 -29.15966 -25.92890 -25.90274 -24.47118 -23.27583 -22.81253 -21.52899 -20.84047 -20.66802 -19.37913 -17.94656 -17.60975 -17.03986 -16.51417 -15.89234 -15.74213 -15.34848 -14.83074 -14.57752 -14.43571 -14.22569 -13.89029 -13.80602 -13.65551 -13.41807 -13.15123 -12.76370 -12.74378 -12.50852 -12.42853 -12.35048 -12.06316 -11.95894 -11.92534 -11.52336 -11.29521 -11.13080 -11.04029 -10.91678 -10.84525 -10.51133 -10.14454 -10.07036 -9.91961 -9.75783 -9.19164 -8.93103 -8.89189 -6.94303 -5.76509 -3.06110 1.68091 2.02872 2.23649 2.62004 2.83998 3.43941 3.49759 3.51926 3.67168 3.78671 4.08313 4.25983 4.35550 4.41567 4.55760 4.59745 4.61352 4.71418 4.79886 4.98425 5.05563 5.11575 5.13724 5.17235 5.20772 5.26553 5.28039 5.37179 5.46479 5.48465 5.52089 5.59585 5.66886 5.68359 5.72540 5.77682 5.90704 5.99951 6.14087 6.34190 6.60675 6.67173 6.73915 6.95155 7.69749 7.73507 8.40723 8.75550 9.52832 10.07925 10.43809 11.46275 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.002829 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.428899 B = 9893.862171 C =11207.025683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.109 4.109 4 H 0.091 0.909 5 C -0.142 4.142 6 C 0.539 3.461 7 O -0.534 6.534 8 N -0.619 5.619 9 C 0.110 3.890 10 C -0.141 4.141 11 C 0.136 3.864 12 H 0.130 0.870 13 N -0.294 5.294 14 C -0.043 4.043 15 C -0.001 4.001 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.074 0.926 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.250 5.250 27 N -0.093 5.093 28 C 0.092 3.908 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.188 0.812 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.087 0.913 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.001 -21.808 -0.581 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.130 4.130 4 H 0.110 0.890 5 C -0.200 4.200 6 C 0.329 3.671 7 O -0.410 6.410 8 N -0.355 5.355 9 C -0.013 4.013 10 C -0.180 4.180 11 C 0.032 3.968 12 H 0.148 0.852 13 N -0.088 5.088 14 C -0.193 4.193 15 C -0.139 4.139 16 C 0.103 3.897 17 N -0.371 5.371 18 C -0.370 4.370 19 H 0.092 0.908 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.117 5.117 27 N -0.071 5.071 28 C -0.033 4.033 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.205 0.795 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.693 -22.621 0.417 23.594 hybrid contribution 0.103 1.053 -1.379 1.738 sum 6.796 -21.568 -0.961 22.633 Atomic orbital electron populations 1.21836 0.95022 1.02039 1.02266 1.21398 0.95970 0.93813 1.03267 1.21395 0.90798 0.99615 1.01225 0.89035 1.21762 1.02579 1.00429 0.95208 1.20490 0.90316 0.79830 0.76501 1.90708 1.67737 1.34790 1.47720 1.48419 1.07184 1.25056 1.54845 1.21921 0.81322 0.97152 1.00898 1.23141 0.96568 0.99177 0.99101 1.22641 0.96197 0.78326 0.99627 0.85188 1.47044 1.39705 1.07074 1.14943 1.23291 1.08835 0.85943 1.01244 1.22479 1.00956 0.98276 0.92157 1.18963 0.91405 0.83642 0.95715 1.42303 1.13411 1.11945 1.69402 1.19272 0.99388 0.88088 1.30285 0.90827 1.24752 0.96318 0.98099 1.01716 1.69685 1.05194 1.34472 1.48645 0.86096 0.77459 0.84347 0.78145 1.20461 1.21906 1.21840 1.75120 1.16639 0.99841 1.20148 1.78307 1.15355 1.07433 1.05994 1.22719 0.95860 0.90437 0.94276 0.92348 0.92522 0.92159 0.90742 0.91766 0.90746 0.92056 0.91721 0.90423 0.90282 0.88121 0.88615 0.79534 0.94259 0.94449 0.78122 0.93565 0.89472 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.11 -0.84 4.93 -26.73 -0.13 -0.97 16 3 C -0.11 -0.90 2.38 -91.77 -0.22 -1.12 16 4 H 0.09 0.66 6.46 -51.93 -0.34 0.32 16 5 C -0.14 -1.13 8.80 37.16 0.33 -0.80 16 6 C 0.54 5.56 6.88 -10.99 -0.08 5.49 16 7 O -0.53 -7.25 16.64 5.56 0.09 -7.16 16 8 N -0.62 -5.31 3.32 -170.39 -0.57 -5.88 16 9 C 0.11 0.77 6.87 -3.07 -0.02 0.75 16 10 C -0.14 -0.85 6.38 -24.90 -0.16 -1.01 16 11 C 0.14 1.12 4.09 -65.67 -0.27 0.85 16 12 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 13 N -0.29 -3.70 3.37 -52.57 -0.18 -3.87 16 14 C -0.04 -0.59 10.59 -17.05 -0.18 -0.77 16 15 C 0.00 -0.02 6.62 -82.78 -0.55 -0.57 16 16 C 0.23 4.71 6.82 -5.19 -0.04 4.67 16 17 N -0.73 -18.51 5.59 -61.08 -0.34 -18.85 16 18 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 N -0.25 -4.85 12.41 33.29 0.41 -4.44 16 27 N -0.09 -1.52 13.17 60.35 0.79 -0.73 16 28 C 0.09 0.75 6.28 -2.41 -0.02 0.73 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.37 6.68 -51.93 -0.35 0.03 16 32 H 0.07 0.66 8.02 -51.93 -0.42 0.24 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.51 6.83 -51.93 -0.35 0.16 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.57 6.39 -51.93 -0.33 0.24 16 41 H 0.19 1.97 7.02 -52.49 -0.37 1.61 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.39 10.58 7.66 -40.82 -0.31 10.27 16 45 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 0.71 6.86 -51.93 -0.36 0.35 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -34.99 383.99 -6.95 -41.94 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -7.44 Total: 4.11 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.21 Total: -0.64 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.85 Total: -61.24 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: 0.09 Total: -7.16 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.99 -6.95 -41.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098618732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.608 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds