Wall clock time and date at job start Tue Mar 31 2020 12:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46811 * 2 1 4 4 H 1.09001 * 109.46885 * 55.00104 * 3 2 1 5 5 C 1.53000 * 109.47122 * 294.99822 * 3 2 1 6 6 C 1.50696 * 109.46838 * 175.00026 * 3 2 1 7 7 O 1.21280 * 120.00077 * 31.59162 * 6 3 2 8 8 N 1.34781 * 120.00147 * 211.58994 * 6 3 2 9 9 C 1.47016 * 125.65010 * 185.12653 * 8 6 3 10 10 C 1.54324 * 107.27024 * 181.02288 * 9 8 6 11 11 C 1.55151 * 102.94339 * 22.19256 * 10 9 8 12 12 H 1.09004 * 111.00468 * 82.61274 * 11 10 9 13 13 N 1.46500 * 111.00705 * 206.42197 * 11 10 9 14 14 C 1.35311 * 125.86639 * 33.55037 * 13 11 10 15 15 C 1.35347 * 106.17490 * 180.02562 * 14 13 11 16 16 C 1.50711 * 126.75094 * 179.97438 * 15 14 13 17 17 N 1.46492 * 109.47232 * 94.99669 * 16 15 14 18 18 C 1.36942 * 120.00024 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99719 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99969 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00216 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47395 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47453 * 119.99803 * 22 20 18 25 25 H 1.48502 * 109.46885 * 239.99931 * 22 20 18 26 26 N 1.33765 * 106.49988 * 359.97438 * 15 14 13 27 27 N 1.28638 * 108.88516 * 359.74240 * 26 15 14 28 28 C 1.47422 * 125.64527 * 4.82081 * 8 6 3 29 29 H 1.09007 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47450 * 299.99660 * 1 2 3 31 31 H 1.09001 * 109.47376 * 60.00299 * 1 2 3 32 32 H 1.08999 * 109.46737 * 240.00139 * 2 1 3 33 33 H 1.08996 * 109.47259 * 120.00438 * 2 1 3 34 34 H 1.09002 * 109.46645 * 65.27285 * 5 3 2 35 35 H 1.09000 * 109.46611 * 185.26512 * 5 3 2 36 36 H 1.08992 * 109.47340 * 305.27530 * 5 3 2 37 37 H 1.08995 * 109.88591 * 300.44329 * 9 8 6 38 38 H 1.09000 * 109.88260 * 61.45110 * 9 8 6 39 39 H 1.08997 * 110.72220 * 140.56066 * 10 9 8 40 40 H 1.08998 * 110.72102 * 263.82914 * 10 9 8 41 41 H 1.08000 * 126.91469 * 359.97438 * 14 13 11 42 42 H 1.09001 * 109.46482 * 214.99946 * 16 15 14 43 43 H 1.09004 * 109.46781 * 334.99079 * 16 15 14 44 44 H 0.97000 * 120.00202 * 359.97438 * 17 16 15 45 45 H 0.97001 * 119.99909 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.36639 * 274.74715 * 28 8 6 47 47 H 1.09006 * 110.36938 * 37.06896 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5418 1.4444 0.1238 7 8 4.1903 0.5348 -0.3485 8 7 4.1644 2.4568 0.7594 9 6 5.6197 2.6393 0.8602 10 6 5.8649 3.9129 1.6965 11 6 4.5444 4.0626 2.4970 12 1 4.5516 3.4299 3.3846 13 7 4.3034 5.4625 2.8555 14 6 4.6437 6.5410 2.1126 15 6 4.2389 7.6252 2.8144 16 6 4.3906 9.0691 2.4103 17 7 3.1640 9.5231 1.7506 18 6 3.0686 10.8104 1.2934 19 1 3.8976 11.4911 1.4195 20 6 1.9061 11.2408 0.6687 21 7 0.8956 10.4115 0.5155 22 14 1.7758 12.9970 0.0457 23 1 3.0386 13.7213 0.3390 24 1 1.5401 12.9859 -1.4204 25 1 0.6450 13.6801 0.7238 26 7 3.6775 7.1630 3.9372 27 7 3.7263 5.8776 3.9286 28 6 3.4988 3.5680 1.4633 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.5493 2.2090 -1.3532 35 1 2.0772 3.1221 -1.3484 36 1 1.9906 1.5360 -2.1516 37 1 6.0679 1.7783 1.3560 38 1 6.0482 2.7582 -0.1349 39 1 6.7108 3.7751 2.3700 40 1 6.0231 4.7751 1.0487 41 1 5.1396 6.5375 1.1532 42 1 4.5731 9.6771 3.2965 43 1 5.2308 9.1676 1.7229 44 1 2.4196 8.9117 1.6370 45 1 0.0834 10.7121 0.0786 46 1 3.2480 4.3647 0.7629 47 1 2.6023 3.2124 1.9715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098618732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:51 Heat of formation + Delta-G solvation = 50.727705 kcal Electronic energy + Delta-G solvation = -27022.458379 eV Core-core repulsion = 23241.867828 eV Total energy + Delta-G solvation = -3780.590551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.30037 -41.43742 -39.09147 -36.80661 -36.44642 -35.18244 -33.68507 -32.19657 -31.59892 -30.50412 -29.93086 -27.64235 -26.57541 -25.28287 -24.79749 -23.98344 -22.39266 -21.99152 -21.54406 -20.09026 -19.37040 -18.67473 -18.22292 -17.43948 -16.92366 -16.64310 -16.49701 -16.00867 -15.88002 -15.46208 -15.21199 -15.01898 -14.85291 -14.55033 -14.37430 -14.26603 -14.11662 -13.64215 -13.48421 -13.12180 -13.08817 -13.01636 -12.95684 -12.78772 -12.63558 -12.58643 -12.55081 -12.06296 -12.01981 -11.85711 -11.77224 -11.74783 -11.66106 -11.09774 -10.95227 -10.83497 -10.22281 -9.89759 -8.99190 -7.91496 -5.21206 0.56181 1.13804 1.44704 1.46681 1.52142 1.53803 1.63042 1.87767 2.61139 3.01228 3.12095 3.28666 3.41955 3.53379 3.66651 3.74104 3.87130 3.90546 3.96892 4.03225 4.16262 4.23213 4.27680 4.36293 4.46031 4.49419 4.53821 4.59488 4.65496 4.69633 4.70857 4.87416 4.88291 4.90086 4.91278 5.06163 5.10081 5.13307 5.14522 5.20842 5.28989 5.43578 5.54124 5.65189 6.21115 6.28727 6.96118 7.35921 7.51381 8.07308 8.32753 9.32480 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.002829 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.428899 B = 9893.862171 C =11207.025683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C -0.108 4.108 4 H 0.104 0.896 5 C -0.140 4.140 6 C 0.536 3.464 7 O -0.572 6.572 8 N -0.616 5.616 9 C 0.107 3.893 10 C -0.128 4.128 11 C 0.130 3.870 12 H 0.146 0.854 13 N -0.275 5.275 14 C -0.016 4.016 15 C -0.034 4.034 16 C 0.234 3.766 17 N -0.739 5.739 18 C -0.241 4.241 19 H 0.084 0.916 20 C -0.076 4.076 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.292 1.292 25 H -0.298 1.298 26 N -0.295 5.295 27 N -0.106 5.106 28 C 0.094 3.906 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.224 0.776 42 H 0.029 0.971 43 H 0.063 0.937 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.081 0.919 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.244 -22.055 -0.920 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.129 4.129 4 H 0.122 0.878 5 C -0.197 4.197 6 C 0.326 3.674 7 O -0.451 6.451 8 N -0.350 5.350 9 C -0.015 4.015 10 C -0.166 4.166 11 C 0.027 3.973 12 H 0.164 0.836 13 N -0.069 5.069 14 C -0.167 4.167 15 C -0.172 4.172 16 C 0.106 3.894 17 N -0.381 5.381 18 C -0.372 4.372 19 H 0.102 0.898 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.186 1.186 24 H -0.219 1.219 25 H -0.225 1.225 26 N -0.162 5.162 27 N -0.084 5.084 28 C -0.030 4.030 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.240 0.760 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.099 0.901 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.986 -22.870 0.120 24.224 hybrid contribution -0.198 1.013 -1.249 1.620 sum 7.788 -21.857 -1.129 23.231 Atomic orbital electron populations 1.21819 0.93787 1.02594 1.02643 1.21361 0.96967 0.93450 1.02416 1.21441 0.89609 1.00014 1.01823 0.87750 1.21750 1.03304 0.99887 0.94805 1.20831 0.91030 0.79537 0.76005 1.90689 1.68618 1.36279 1.49477 1.48423 1.08027 1.24511 1.54045 1.22046 0.80354 0.97881 1.01250 1.23157 0.95813 0.98749 0.98898 1.23036 0.97571 0.76008 1.00639 0.83649 1.47299 1.37550 1.08455 1.13551 1.23645 1.06671 0.84892 1.01472 1.22249 1.03507 0.98174 0.93252 1.18983 0.89950 0.85202 0.95226 1.42505 1.14730 1.11180 1.69734 1.19716 0.99422 0.89173 1.28906 0.89819 1.25586 0.96277 1.02067 1.02891 1.69845 1.05704 1.36385 1.50240 0.85046 0.77641 0.79765 0.77127 1.18647 1.21917 1.22534 1.75056 1.18240 1.01260 1.21626 1.78206 1.16255 1.06426 1.07493 1.22692 0.96136 0.90114 0.94070 0.91779 0.92056 0.91805 0.92045 0.92205 0.89539 0.92532 0.92395 0.89994 0.90240 0.85979 0.87890 0.75959 0.95347 0.91885 0.79740 0.94119 0.90075 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.67 71.98 0.70 -1.08 16 2 C -0.10 -1.58 4.93 30.60 0.15 -1.43 16 3 C -0.11 -1.67 2.38 -11.54 -0.03 -1.70 16 4 H 0.10 1.33 6.46 -2.39 -0.02 1.32 16 5 C -0.14 -2.10 8.80 71.98 0.63 -1.47 16 6 C 0.54 10.58 6.88 87.66 0.60 11.18 16 7 O -0.57 -15.41 16.64 -3.03 -0.05 -15.46 16 8 N -0.62 -9.45 3.32 -811.37 -2.70 -12.15 16 9 C 0.11 1.24 6.87 86.73 0.60 1.84 16 10 C -0.13 -1.08 6.38 31.78 0.20 -0.88 16 11 C 0.13 1.75 4.09 46.46 0.19 1.94 16 12 H 0.15 1.62 8.14 -2.38 -0.02 1.60 16 13 N -0.27 -6.27 3.37 -320.24 -1.08 -7.35 16 14 C -0.02 -0.39 10.59 83.49 0.88 0.50 16 15 C -0.03 -1.18 6.62 41.60 0.28 -0.90 16 16 C 0.23 9.33 6.82 85.64 0.58 9.91 16 17 N -0.74 -37.63 5.59 -347.17 -1.94 -39.57 16 18 C -0.24 -13.23 9.99 84.03 0.84 -12.39 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 20 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 21 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 22 Si 0.98 45.62 29.55 68.60 2.03 47.65 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 25 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 26 N -0.29 -11.39 12.41 -48.60 -0.60 -12.00 16 27 N -0.11 -3.36 13.17 37.02 0.49 -2.87 16 28 C 0.09 1.32 6.28 86.93 0.55 1.87 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.71 6.68 -2.39 -0.02 0.69 16 32 H 0.06 1.09 8.02 -2.39 -0.02 1.07 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.08 6.83 -2.39 -0.02 1.06 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.10 0.79 6.39 -2.39 -0.02 0.77 16 41 H 0.22 3.79 7.02 -2.91 -0.02 3.77 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.37 20.67 7.66 -92.71 -0.71 19.96 16 45 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 46 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 47 H 0.10 1.31 6.86 -2.38 -0.02 1.29 16 Total: -1.00 -76.73 383.99 3.33 -73.40 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.27 Total: 24.06 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 6.64 Total: 3.50 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -5.55 Total: -133.15 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.05 Total: -15.46 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -76.73 3.33 -73.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098618732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.125 kcal (2) G-P(sol) polarization free energy of solvation -76.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds