Wall clock time and date at job start Tue Mar 31 2020 12:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46983 * 2 1 4 4 H 1.09004 * 109.47161 * 304.99735 * 3 2 1 5 5 C 1.52994 * 109.47547 * 64.99792 * 3 2 1 6 6 C 1.50700 * 109.47066 * 185.00300 * 3 2 1 7 7 O 1.21277 * 120.00076 * 334.11231 * 6 3 2 8 8 N 1.34779 * 120.00005 * 154.11488 * 6 3 2 9 9 C 1.47021 * 125.64953 * 354.67194 * 8 6 3 10 10 C 1.54327 * 107.27250 * 178.90547 * 9 8 6 11 11 C 1.55153 * 102.94152 * 337.80798 * 10 9 8 12 12 H 1.09007 * 111.00114 * 277.42725 * 11 10 9 13 13 N 1.46494 * 111.00371 * 153.57757 * 11 10 9 14 14 C 1.35313 * 125.86866 * 326.16487 * 13 11 10 15 15 C 1.35356 * 106.17557 * 179.90450 * 14 13 11 16 16 C 1.50697 * 126.74936 * 180.12355 * 15 14 13 17 17 N 1.46501 * 109.47118 * 95.30370 * 16 15 14 18 18 C 1.36932 * 120.00122 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00326 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99875 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99840 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00050 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47570 * 89.98887 * 22 20 18 24 24 H 1.48493 * 109.47071 * 209.99552 * 22 20 18 25 25 H 1.48506 * 109.46877 * 329.99272 * 22 20 18 26 26 N 1.33773 * 106.49462 * 0.35407 * 15 14 13 27 27 N 1.28633 * 108.88419 * 359.77565 * 26 15 14 28 28 C 1.47422 * 125.64974 * 174.62888 * 8 6 3 29 29 H 1.09005 * 109.47036 * 300.00034 * 1 2 3 30 30 H 1.09000 * 109.47721 * 60.00123 * 1 2 3 31 31 H 1.08996 * 109.47208 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47063 * 240.00081 * 2 1 3 33 33 H 1.09002 * 109.47533 * 119.99366 * 2 1 3 34 34 H 1.09002 * 109.47218 * 64.33666 * 5 3 2 35 35 H 1.08998 * 109.47342 * 184.33475 * 5 3 2 36 36 H 1.09000 * 109.47324 * 304.34192 * 5 3 2 37 37 H 1.09005 * 109.88344 * 59.48615 * 9 8 6 38 38 H 1.09004 * 109.88559 * 298.32273 * 9 8 6 39 39 H 1.09002 * 110.71975 * 96.17163 * 10 9 8 40 40 H 1.09006 * 110.71729 * 219.44297 * 10 9 8 41 41 H 1.08000 * 126.91259 * 0.02562 * 14 13 11 42 42 H 1.09000 * 109.46955 * 215.29801 * 16 15 14 43 43 H 1.08996 * 109.47790 * 335.29755 * 16 15 14 44 44 H 0.97005 * 119.99236 * 359.97438 * 17 16 15 45 45 H 0.97006 * 120.00170 * 180.02562 * 21 20 18 46 46 H 1.09006 * 110.36748 * 323.00549 * 28 8 6 47 47 H 1.09003 * 110.36772 * 85.32607 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1266 1.3072 6 6 3.5418 1.4443 -0.1239 7 8 4.1828 0.4873 0.2556 8 7 4.1728 2.5096 -0.6564 9 6 3.5183 3.6826 -1.2542 10 6 4.6334 4.6509 -1.7021 11 6 5.8376 4.2253 -0.8213 12 1 5.7804 4.6831 0.1663 13 7 7.1075 4.5502 -1.4755 14 6 7.3428 4.5226 -2.8077 15 6 8.6348 4.8919 -2.9702 16 6 9.3791 5.0192 -4.2743 17 7 9.3374 6.4120 -4.7264 18 6 9.9506 6.7706 -5.8971 19 1 10.4653 6.0266 -6.4870 20 6 9.9115 8.0905 -6.3252 21 7 9.2847 8.9972 -5.6060 22 14 10.7474 8.5795 -7.9225 23 1 9.7850 8.4468 -9.0457 24 1 11.2081 9.9880 -7.8291 25 1 11.9137 7.6921 -8.1627 26 7 9.1225 5.1166 -1.7449 27 7 8.1927 4.9054 -0.8815 28 6 5.6335 2.6922 -0.7351 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.1315 1.6346 2.1437 35 1 1.9308 3.1753 1.2753 36 1 0.5548 2.0573 1.4343 37 1 2.8805 4.1679 -0.5154 38 1 2.9246 3.3769 -2.1158 39 1 4.8613 4.5140 -2.7592 40 1 4.3520 5.6840 -1.4977 41 1 6.6404 4.2607 -3.5852 42 1 10.4158 4.7142 -4.1322 43 1 8.9118 4.3799 -5.0233 44 1 8.8747 7.0802 -4.1967 45 1 9.2570 9.9195 -5.9053 46 1 6.1142 2.2951 0.1590 47 1 6.0291 2.2062 -1.6271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098618733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:55 Heat of formation + Delta-G solvation = 74.674248 kcal Electronic energy + Delta-G solvation = -26673.762401 eV Core-core repulsion = 22894.210250 eV Total energy + Delta-G solvation = -3779.552151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.07889 -40.73925 -38.35868 -35.86853 -35.08959 -34.05270 -31.98189 -31.09074 -30.34556 -29.94003 -29.11687 -26.09111 -25.84824 -24.47115 -23.19720 -22.75079 -21.69565 -20.91144 -20.63343 -19.43947 -18.02202 -17.49959 -17.05689 -16.30461 -16.09779 -15.93442 -15.32707 -14.80435 -14.70183 -14.48893 -14.26884 -14.11150 -13.71896 -13.66503 -13.34860 -13.16791 -12.89543 -12.73702 -12.63229 -12.51361 -12.24511 -12.20152 -12.02725 -11.97023 -11.51133 -11.30221 -11.25240 -11.16700 -10.91112 -10.80930 -10.48560 -10.19405 -10.09348 -9.90301 -9.72994 -9.23294 -8.90202 -8.86077 -6.92317 -5.74473 -3.04035 1.72579 2.00459 2.17762 2.63757 2.87827 3.45263 3.50680 3.52774 3.63674 3.81163 4.09670 4.20352 4.25721 4.35996 4.42720 4.54802 4.62429 4.74263 4.75742 4.87618 4.95360 4.98835 5.04951 5.07061 5.20487 5.22913 5.28136 5.29256 5.35214 5.38345 5.48360 5.49512 5.58248 5.61085 5.64319 5.76666 5.81359 5.88323 6.16601 6.37688 6.63903 6.71241 6.77251 6.92528 7.67518 7.71011 8.42732 8.79773 9.54649 10.10089 10.46203 11.48256 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.002138 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.088584 B =13092.624207 C =13467.015115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.105 4.105 4 H 0.092 0.908 5 C -0.144 4.144 6 C 0.536 3.464 7 O -0.532 6.532 8 N -0.620 5.620 9 C 0.103 3.897 10 C -0.143 4.143 11 C 0.136 3.864 12 H 0.129 0.871 13 N -0.293 5.293 14 C -0.043 4.043 15 C -0.001 4.001 16 C 0.232 3.768 17 N -0.725 5.725 18 C -0.239 4.239 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 N -0.250 5.250 27 N -0.092 5.092 28 C 0.101 3.899 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.187 0.813 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.093 0.907 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.275 -15.152 12.470 29.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.126 4.126 4 H 0.110 0.890 5 C -0.201 4.201 6 C 0.325 3.675 7 O -0.407 6.407 8 N -0.356 5.356 9 C -0.020 4.020 10 C -0.181 4.181 11 C 0.032 3.968 12 H 0.147 0.853 13 N -0.087 5.087 14 C -0.193 4.193 15 C -0.139 4.139 16 C 0.103 3.897 17 N -0.370 5.370 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.741 3.259 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 N -0.118 5.118 27 N -0.070 5.070 28 C -0.023 4.023 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.193 -15.465 13.932 29.705 hybrid contribution -0.333 0.520 -1.754 1.859 sum -21.526 -14.944 12.178 28.897 Atomic orbital electron populations 1.21841 0.95122 1.02117 1.01993 1.21390 0.95767 0.93933 1.03543 1.21335 0.90778 0.99618 1.00917 0.88961 1.21787 1.02533 1.00256 0.95521 1.20503 0.90219 0.80616 0.76142 1.90734 1.68095 1.33254 1.48640 1.48412 1.06551 1.20115 1.60502 1.22109 0.95666 0.85552 0.98700 1.23145 0.92679 1.01069 1.01237 1.22593 0.79510 0.96138 0.98605 0.85284 1.47014 1.10536 1.45350 1.05758 1.23281 0.99599 1.10104 0.86363 1.22475 0.92595 1.02898 0.95923 1.18960 0.96124 0.89278 0.85356 1.42299 1.65936 1.02996 1.25804 1.19233 1.26933 0.93176 0.97690 0.90872 1.24762 1.01203 0.95929 0.99078 1.69680 1.47534 1.01778 1.39065 0.86151 0.79036 0.77614 0.83145 1.21752 1.21800 1.20662 1.75119 1.21508 1.16074 0.99082 1.78306 0.89077 1.17304 1.22352 1.22473 0.81944 0.93563 1.04355 0.92270 0.92609 0.92298 0.91559 0.90746 0.91819 0.92103 0.90767 0.90184 0.90031 0.88477 0.87823 0.79552 0.94247 0.94448 0.78107 0.93529 0.88888 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.67 37.16 0.36 -0.31 16 2 C -0.11 -0.69 4.86 -26.73 -0.13 -0.82 16 3 C -0.11 -0.62 2.29 -91.77 -0.21 -0.83 16 4 H 0.09 0.38 7.28 -51.93 -0.38 0.00 16 5 C -0.14 -0.68 9.03 37.15 0.34 -0.34 16 6 C 0.54 4.97 6.94 -10.98 -0.08 4.89 16 7 O -0.53 -7.16 16.51 5.56 0.09 -7.07 16 8 N -0.62 -4.81 3.33 -170.52 -0.57 -5.38 16 9 C 0.10 0.48 6.08 -3.06 -0.02 0.46 16 10 C -0.14 -0.87 6.38 -24.90 -0.16 -1.03 16 11 C 0.14 1.20 4.08 -65.79 -0.27 0.94 16 12 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 13 N -0.29 -3.96 3.37 -52.68 -0.18 -4.14 16 14 C -0.04 -0.63 10.59 -17.04 -0.18 -0.81 16 15 C 0.00 -0.03 6.62 -82.78 -0.55 -0.57 16 16 C 0.23 4.85 6.82 -5.19 -0.04 4.81 16 17 N -0.73 -18.85 5.59 -61.09 -0.34 -19.19 16 18 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 22 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 N -0.25 -5.09 12.41 33.29 0.41 -4.68 16 27 N -0.09 -1.61 13.16 60.35 0.79 -0.82 16 28 C 0.10 0.92 6.57 -2.53 -0.02 0.91 16 29 H 0.06 0.22 6.47 -51.93 -0.34 -0.12 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.24 7.60 -51.93 -0.39 -0.15 16 36 H 0.07 0.25 6.37 -51.93 -0.33 -0.08 16 37 H 0.08 0.24 7.60 -51.93 -0.39 -0.16 16 38 H 0.08 0.28 8.01 -51.93 -0.42 -0.13 16 39 H 0.10 0.62 6.40 -51.93 -0.33 0.29 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.19 2.08 7.04 -52.49 -0.37 1.71 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.39 10.78 7.66 -40.82 -0.31 10.46 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -36.16 383.70 -6.95 -43.11 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.45 Total: 2.84 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.19 Total: -0.07 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.85 Total: -62.01 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.07 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.16 -6.95 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098618733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.784 kcal (2) G-P(sol) polarization free energy of solvation -36.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds