Wall clock time and date at job start Tue Mar 31 2020 13:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47238 * 2 1 4 4 C 1.53002 * 109.47071 * 169.08694 * 3 2 1 5 5 C 1.52995 * 109.46799 * 184.99782 * 4 3 2 6 6 C 1.52997 * 109.46910 * 289.09041 * 3 2 1 7 7 N 1.46500 * 109.47371 * 292.93330 * 6 3 2 8 8 C 1.46505 * 120.00109 * 276.55213 * 7 6 3 9 9 C 1.50699 * 109.46401 * 264.83166 * 8 7 6 10 10 H 1.07996 * 120.00556 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99413 * 179.97438 * 9 8 7 12 12 N 1.31507 * 119.99974 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99713 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47158 * 59.99948 * 13 11 9 15 15 H 1.48498 * 109.46944 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46909 * 299.99971 * 13 11 9 17 17 C 1.34782 * 119.99820 * 96.54227 * 7 6 3 18 18 O 1.21280 * 119.99819 * 186.53107 * 17 7 6 19 19 C 1.50693 * 119.99951 * 6.54064 * 17 7 6 20 20 H 1.09001 * 110.46526 * 294.68857 * 19 17 7 21 21 C 1.54610 * 110.41708 * 57.11057 * 19 17 7 22 22 C 1.55977 * 104.46689 * 118.44442 * 21 19 17 23 23 H 1.09001 * 116.70498 * 161.25085 * 22 21 19 24 24 C 1.55957 * 104.30921 * 290.79966 * 22 21 19 25 25 C 1.52173 * 104.87387 * 70.37510 * 24 22 21 26 26 O 1.20758 * 127.32811 * 179.69665 * 25 24 22 27 27 C 1.53518 * 105.33895 * 359.70117 * 25 24 22 28 28 H 1.08999 * 115.83717 * 161.08002 * 27 25 24 29 29 C 1.56927 * 100.84558 * 34.04069 * 27 25 24 30 30 H 1.09005 * 109.47397 * 59.06141 * 1 2 3 31 31 H 1.08998 * 109.47281 * 179.05749 * 1 2 3 32 32 H 1.08995 * 109.47525 * 299.05755 * 1 2 3 33 33 H 1.08995 * 109.47390 * 239.99644 * 2 1 3 34 34 H 1.09002 * 109.47297 * 119.99826 * 2 1 3 35 35 H 1.09001 * 109.47065 * 49.08954 * 3 2 1 36 36 H 1.08999 * 109.47506 * 305.00140 * 4 3 2 37 37 H 1.09000 * 109.46737 * 65.00347 * 4 3 2 38 38 H 1.08999 * 109.47384 * 300.00433 * 5 4 3 39 39 H 1.09005 * 109.47189 * 60.00294 * 5 4 3 40 40 H 1.08997 * 109.47440 * 180.02562 * 5 4 3 41 41 H 1.08998 * 109.47225 * 172.93408 * 6 3 2 42 42 H 1.09000 * 109.47408 * 52.93267 * 6 3 2 43 43 H 1.08999 * 109.46751 * 24.83274 * 8 7 6 44 44 H 1.08995 * 109.46853 * 144.83215 * 8 7 6 45 45 H 0.97004 * 119.99711 * 179.97438 * 12 11 9 46 46 H 1.09003 * 110.43590 * 237.19121 * 21 19 17 47 47 H 1.08998 * 110.43580 * 359.69637 * 21 19 17 48 48 H 1.09008 * 110.35662 * 311.53228 * 24 22 21 49 49 H 1.08994 * 110.45342 * 189.27790 * 24 22 21 50 50 H 1.09003 * 112.08551 * 63.25732 * 29 27 25 51 51 H 1.08998 * 112.08818 * 189.93618 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5454 1.4512 0.2731 5 6 4.0329 2.8961 0.3968 6 6 1.7652 2.0806 -1.3632 7 7 2.5863 1.4247 -2.3838 8 6 3.9749 1.8447 -2.5881 9 6 4.0353 2.8527 -3.7067 10 1 3.1299 3.1509 -4.2144 11 6 5.2464 3.3950 -4.0813 12 7 6.3486 3.0330 -3.4621 13 14 5.3212 4.6450 -5.4675 14 1 4.4932 5.8260 -5.1142 15 1 6.7285 5.0716 -5.6738 16 1 4.8013 4.0314 -6.7159 17 6 2.0643 0.4347 -3.1349 18 8 2.7743 -0.1880 -3.8958 19 6 0.5984 0.1016 -3.0291 20 1 0.3660 -0.2851 -2.0369 21 6 -0.2617 1.3491 -3.3368 22 6 -1.0940 0.9482 -4.5935 23 1 -1.9849 1.5412 -4.8006 24 6 -0.0423 0.8654 -5.7421 25 6 0.7876 -0.3697 -5.4235 26 8 1.7146 -0.8126 -6.0581 27 6 0.1954 -0.9328 -4.1240 28 1 0.4338 -1.9736 -3.9051 29 6 -1.3219 -0.5800 -4.3137 30 1 -0.3634 0.5284 -0.8815 31 1 -0.3634 -1.0275 -0.0169 32 1 -0.3634 0.4991 0.8982 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5266 2.0094 0.7767 36 1 3.7493 0.9181 1.2017 37 1 4.0666 0.9611 -0.5492 38 1 3.8289 3.4292 -0.5318 39 1 3.5116 3.3863 1.2191 40 1 5.1054 2.9024 0.5909 41 1 2.0126 3.1414 -1.3243 42 1 0.7110 1.9623 -1.6138 43 1 4.3566 2.2952 -1.6719 44 1 4.5824 0.9776 -2.8471 45 1 7.2007 3.4142 -3.7259 46 1 -0.9217 1.5725 -2.4985 47 1 0.3753 2.2051 -3.5593 48 1 0.5875 1.7552 -5.7444 49 1 -0.5388 0.7506 -6.7056 50 1 -1.7579 -1.0931 -5.1709 51 1 -1.8988 -0.7487 -3.4044 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457528126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:11 Heat of formation + Delta-G solvation = -60.793697 kcal Electronic energy + Delta-G solvation = -30682.827695 eV Core-core repulsion = 26968.648806 eV Total energy + Delta-G solvation = -3714.178890 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26503 -38.93231 -36.97481 -36.82971 -33.85954 -32.54823 -32.18429 -30.12728 -28.92472 -28.15702 -27.14911 -26.20609 -24.95583 -23.21851 -21.68672 -21.45370 -20.26612 -19.97573 -18.80023 -17.75023 -16.93849 -16.49244 -16.09928 -15.67970 -15.26720 -14.96694 -14.56105 -14.35620 -14.06691 -13.82409 -13.41018 -13.32234 -13.19692 -12.85039 -12.76485 -12.40743 -12.28139 -12.11237 -11.91458 -11.73881 -11.49069 -11.37623 -11.27334 -11.12070 -11.06926 -10.99559 -10.93158 -10.71870 -10.69261 -10.48119 -10.39883 -10.18658 -10.17831 -10.09755 -9.93206 -9.47402 -8.87693 -8.70746 -8.35764 -7.54767 -5.99975 -4.03455 2.54392 3.32572 3.37897 3.39338 3.46320 3.91652 4.30954 4.41015 4.47614 4.49777 4.76932 4.94919 4.98194 5.05879 5.10301 5.19320 5.23965 5.27930 5.34539 5.36693 5.41293 5.49298 5.55940 5.69214 5.72772 5.76637 5.80480 5.81531 5.84576 5.93303 5.96277 5.98123 6.03068 6.03797 6.12449 6.19310 6.23693 6.27121 6.29591 6.37990 6.46073 6.57214 6.82508 6.85603 7.20192 7.52825 7.62689 7.97415 8.11184 8.29854 8.49329 8.94613 9.16290 9.60782 11.07653 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.006903 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.693210 B = 4055.172604 C = 5943.315305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.127 4.127 3 C -0.103 4.103 4 C -0.125 4.125 5 C -0.155 4.155 6 C 0.101 3.899 7 N -0.589 5.589 8 C 0.230 3.770 9 C -0.523 4.523 10 H 0.052 0.948 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.501 3.499 18 O -0.525 6.525 19 C -0.129 4.129 20 H 0.122 0.878 21 C -0.120 4.120 22 C -0.095 4.095 23 H 0.110 0.890 24 C -0.183 4.183 25 C 0.373 3.627 26 O -0.414 6.414 27 C -0.134 4.134 28 H 0.112 0.888 29 C -0.119 4.119 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.035 0.965 45 H 0.263 0.737 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.075 0.925 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.982 -3.220 7.276 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.164 4.164 3 C -0.123 4.123 4 C -0.163 4.163 5 C -0.212 4.212 6 C -0.024 4.024 7 N -0.320 5.320 8 C 0.112 3.888 9 C -0.562 4.562 10 H 0.070 0.930 11 C -0.139 4.139 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.287 3.713 18 O -0.401 6.401 19 C -0.150 4.150 20 H 0.139 0.861 21 C -0.158 4.158 22 C -0.113 4.113 23 H 0.128 0.872 24 C -0.221 4.221 25 C 0.244 3.756 26 O -0.283 6.283 27 C -0.153 4.153 28 H 0.130 0.870 29 C -0.157 4.157 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.115 0.885 49 H 0.110 0.890 50 H 0.093 0.907 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.829 -3.733 6.523 18.431 hybrid contribution 0.221 0.868 -0.605 1.081 sum -16.607 -2.865 5.918 17.862 Atomic orbital electron populations 1.22075 0.96447 1.01601 1.02026 1.21674 0.95219 0.97241 1.02286 1.21646 0.96941 0.95941 0.97729 1.21725 0.95072 0.97769 1.01691 1.21896 1.00745 0.96567 1.01964 1.21791 0.95496 0.97776 0.87295 1.48089 1.15191 1.34437 1.34277 1.19687 0.75590 0.95721 0.97834 1.21385 0.93244 1.23580 1.18001 0.92954 1.24876 0.95515 0.96942 0.96548 1.69908 0.98264 1.43634 1.41450 0.86658 0.76981 0.81436 0.82967 1.20337 1.21198 1.20259 1.20260 0.88832 0.80892 0.81297 1.90802 1.61317 1.50362 1.37656 1.22895 0.94347 0.96381 1.01373 0.86064 1.22882 0.97834 0.97381 0.97698 1.23541 0.97037 0.96326 0.94396 0.87170 1.23214 0.98814 1.00203 0.99849 1.24987 0.81092 0.84935 0.84582 1.90402 1.22276 1.62327 1.53281 1.24004 0.95866 0.99684 0.95794 0.87026 1.23541 0.94553 0.95627 1.01952 0.91615 0.92820 0.92585 0.91652 0.92135 0.90933 0.93212 0.90063 0.90675 0.93955 0.92897 0.90395 0.90463 0.92187 0.94663 0.92781 0.90481 0.89915 0.88468 0.89036 0.90670 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.32 37.15 0.31 -1.23 16 2 C -0.13 -1.55 4.88 -26.73 -0.13 -1.68 16 3 C -0.10 -1.37 2.18 -90.62 -0.20 -1.57 16 4 C -0.13 -1.95 4.84 -26.73 -0.13 -2.08 16 5 C -0.15 -2.47 8.60 37.15 0.32 -2.15 16 6 C 0.10 1.53 4.31 -4.04 -0.02 1.51 16 7 N -0.59 -11.76 1.91 -175.06 -0.33 -12.09 16 8 C 0.23 5.81 3.57 -5.19 -0.02 5.79 16 9 C -0.52 -14.66 9.34 -34.44 -0.32 -14.98 16 10 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 11 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 12 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 13 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 17 C 0.50 10.18 4.96 -10.99 -0.05 10.12 16 18 O -0.52 -13.53 13.11 -16.56 -0.22 -13.74 16 19 C -0.13 -1.85 1.86 -89.37 -0.17 -2.01 16 20 H 0.12 1.48 2.98 -51.93 -0.15 1.33 16 21 C -0.12 -1.42 3.74 -24.29 -0.09 -1.51 16 22 C -0.09 -0.98 5.25 -85.27 -0.45 -1.42 16 23 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 24 C -0.18 -2.58 6.10 -25.57 -0.16 -2.73 16 25 C 0.37 6.73 5.33 -26.88 -0.14 6.59 16 26 O -0.41 -9.60 16.58 -16.12 -0.27 -9.87 16 27 C -0.13 -1.90 4.59 -86.67 -0.40 -2.30 16 28 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 29 C -0.12 -1.15 6.45 -22.43 -0.14 -1.30 16 30 H 0.07 0.59 3.57 -51.93 -0.19 0.41 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.97 5.39 -51.93 -0.28 0.69 16 34 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 37 H 0.08 1.56 5.37 -51.93 -0.28 1.28 16 38 H 0.07 1.38 5.24 -51.93 -0.27 1.11 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.25 6.90 -51.93 -0.36 0.89 16 42 H 0.08 0.97 2.85 -51.93 -0.15 0.82 16 43 H 0.06 1.46 3.32 -51.93 -0.17 1.29 16 44 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.08 0.68 6.55 -51.93 -0.34 0.34 16 47 H 0.08 1.18 6.69 -51.93 -0.35 0.84 16 48 H 0.10 1.57 7.84 -51.92 -0.41 1.17 16 49 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -34.86 363.40 -9.45 -44.32 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.94 Total: 3.79 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -1.88 Total: -9.26 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.40 Total: -37.86 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.48 Total: -23.61 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.86 -9.45 -44.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457528126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.475 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds