Wall clock time and date at job start Tue Mar 31 2020 13:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47238 * 2 1 4 4 C 1.53002 * 109.47071 * 169.08694 * 3 2 1 5 5 C 1.52995 * 109.46799 * 184.99782 * 4 3 2 6 6 C 1.52997 * 109.46910 * 289.09041 * 3 2 1 7 7 N 1.46500 * 109.47371 * 292.93330 * 6 3 2 8 8 C 1.46505 * 120.00109 * 276.55213 * 7 6 3 9 9 C 1.50699 * 109.46401 * 264.83166 * 8 7 6 10 10 H 1.07996 * 120.00556 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99413 * 179.97438 * 9 8 7 12 12 N 1.31507 * 119.99974 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99713 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47158 * 59.99948 * 13 11 9 15 15 H 1.48498 * 109.46944 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46909 * 299.99971 * 13 11 9 17 17 C 1.34782 * 119.99820 * 96.54227 * 7 6 3 18 18 O 1.21280 * 119.99819 * 186.53107 * 17 7 6 19 19 C 1.50693 * 119.99951 * 6.54064 * 17 7 6 20 20 H 1.09001 * 110.46526 * 294.68857 * 19 17 7 21 21 C 1.54610 * 110.41708 * 57.11057 * 19 17 7 22 22 C 1.55977 * 104.46689 * 118.44442 * 21 19 17 23 23 H 1.09001 * 116.70498 * 161.25085 * 22 21 19 24 24 C 1.55957 * 104.30921 * 290.79966 * 22 21 19 25 25 C 1.52173 * 104.87387 * 70.37510 * 24 22 21 26 26 O 1.20758 * 127.32811 * 179.69665 * 25 24 22 27 27 C 1.53518 * 105.33895 * 359.70117 * 25 24 22 28 28 H 1.08999 * 115.83717 * 161.08002 * 27 25 24 29 29 C 1.56927 * 100.84558 * 34.04069 * 27 25 24 30 30 H 1.09005 * 109.47397 * 59.06141 * 1 2 3 31 31 H 1.08998 * 109.47281 * 179.05749 * 1 2 3 32 32 H 1.08995 * 109.47525 * 299.05755 * 1 2 3 33 33 H 1.08995 * 109.47390 * 239.99644 * 2 1 3 34 34 H 1.09002 * 109.47297 * 119.99826 * 2 1 3 35 35 H 1.09001 * 109.47065 * 49.08954 * 3 2 1 36 36 H 1.08999 * 109.47506 * 305.00140 * 4 3 2 37 37 H 1.09000 * 109.46737 * 65.00347 * 4 3 2 38 38 H 1.08999 * 109.47384 * 300.00433 * 5 4 3 39 39 H 1.09005 * 109.47189 * 60.00294 * 5 4 3 40 40 H 1.08997 * 109.47440 * 180.02562 * 5 4 3 41 41 H 1.08998 * 109.47225 * 172.93408 * 6 3 2 42 42 H 1.09000 * 109.47408 * 52.93267 * 6 3 2 43 43 H 1.08999 * 109.46751 * 24.83274 * 8 7 6 44 44 H 1.08995 * 109.46853 * 144.83215 * 8 7 6 45 45 H 0.97004 * 119.99711 * 179.97438 * 12 11 9 46 46 H 1.09003 * 110.43590 * 237.19121 * 21 19 17 47 47 H 1.08998 * 110.43580 * 359.69637 * 21 19 17 48 48 H 1.09008 * 110.35662 * 311.53228 * 24 22 21 49 49 H 1.08994 * 110.45342 * 189.27790 * 24 22 21 50 50 H 1.09003 * 112.08551 * 63.25732 * 29 27 25 51 51 H 1.08998 * 112.08818 * 189.93618 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5454 1.4512 0.2731 5 6 4.0329 2.8961 0.3968 6 6 1.7652 2.0806 -1.3632 7 7 2.5863 1.4247 -2.3838 8 6 3.9749 1.8447 -2.5881 9 6 4.0353 2.8527 -3.7067 10 1 3.1299 3.1509 -4.2144 11 6 5.2464 3.3950 -4.0813 12 7 6.3486 3.0330 -3.4621 13 14 5.3212 4.6450 -5.4675 14 1 4.4932 5.8260 -5.1142 15 1 6.7285 5.0716 -5.6738 16 1 4.8013 4.0314 -6.7159 17 6 2.0643 0.4347 -3.1349 18 8 2.7743 -0.1880 -3.8958 19 6 0.5984 0.1016 -3.0291 20 1 0.3660 -0.2851 -2.0369 21 6 -0.2617 1.3491 -3.3368 22 6 -1.0940 0.9482 -4.5935 23 1 -1.9849 1.5412 -4.8006 24 6 -0.0423 0.8654 -5.7421 25 6 0.7876 -0.3697 -5.4235 26 8 1.7146 -0.8126 -6.0581 27 6 0.1954 -0.9328 -4.1240 28 1 0.4338 -1.9736 -3.9051 29 6 -1.3219 -0.5800 -4.3137 30 1 -0.3634 0.5284 -0.8815 31 1 -0.3634 -1.0275 -0.0169 32 1 -0.3634 0.4991 0.8982 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5266 2.0094 0.7767 36 1 3.7493 0.9181 1.2017 37 1 4.0666 0.9611 -0.5492 38 1 3.8289 3.4292 -0.5318 39 1 3.5116 3.3863 1.2191 40 1 5.1054 2.9024 0.5909 41 1 2.0126 3.1414 -1.3243 42 1 0.7110 1.9623 -1.6138 43 1 4.3566 2.2952 -1.6719 44 1 4.5824 0.9776 -2.8471 45 1 7.2007 3.4142 -3.7259 46 1 -0.9217 1.5725 -2.4985 47 1 0.3753 2.2051 -3.5593 48 1 0.5875 1.7552 -5.7444 49 1 -0.5388 0.7506 -6.7056 50 1 -1.7579 -1.0931 -5.1709 51 1 -1.8988 -0.7487 -3.4044 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457528126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:10 Heat of formation + Delta-G solvation = -82.124188 kcal Electronic energy + Delta-G solvation = -30683.752655 eV Core-core repulsion = 26968.648806 eV Total energy + Delta-G solvation = -3715.103849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.50909 -40.33420 -38.37520 -38.31821 -35.60381 -34.34499 -33.51556 -31.34905 -30.15278 -29.54996 -28.36825 -27.71002 -26.13454 -25.06964 -22.85419 -22.74943 -21.29663 -21.18078 -20.14193 -19.14093 -18.71488 -18.00452 -17.36959 -17.14090 -16.74293 -16.58540 -16.12538 -15.60388 -15.52458 -15.17271 -14.90751 -14.69684 -14.47914 -14.14146 -13.97145 -13.81603 -13.67655 -13.36902 -13.29463 -13.01556 -12.97739 -12.80891 -12.62664 -12.45262 -12.35885 -12.31172 -12.19522 -12.13454 -11.99230 -11.81600 -11.68141 -11.59585 -11.42917 -11.37971 -11.29170 -11.08408 -10.61090 -10.40910 -10.14438 -9.29609 -8.22296 -6.35438 1.17505 1.27888 1.33478 1.39463 1.88890 2.30114 2.47471 3.06389 3.17784 3.41776 3.44048 3.69033 3.87590 3.90738 3.96823 4.03044 4.07978 4.16785 4.26210 4.39156 4.41252 4.46450 4.59399 4.62058 4.65321 4.71634 4.76131 4.79316 4.84821 4.87665 4.94653 5.02295 5.06228 5.09961 5.15663 5.15950 5.19351 5.21849 5.26670 5.27467 5.33429 5.36762 5.37780 5.51689 5.53611 5.60209 5.67875 5.94690 6.12785 6.71730 6.77126 6.89545 7.29288 7.58295 8.83360 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.006903 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.693210 B = 4055.172604 C = 5943.315305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.127 4.127 3 C -0.096 4.096 4 C -0.126 4.126 5 C -0.148 4.148 6 C 0.095 3.905 7 N -0.588 5.588 8 C 0.250 3.750 9 C -0.537 4.537 10 H 0.046 0.954 11 C 0.009 3.991 12 N -0.926 5.926 13 Si 0.955 3.045 14 H -0.254 1.254 15 H -0.277 1.277 16 H -0.287 1.287 17 C 0.488 3.512 18 O -0.595 6.595 19 C -0.117 4.117 20 H 0.152 0.848 21 C -0.125 4.125 22 C -0.070 4.070 23 H 0.159 0.841 24 C -0.189 4.189 25 C 0.349 3.651 26 O -0.488 6.488 27 C -0.145 4.145 28 H 0.103 0.897 29 C -0.097 4.097 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.115 0.885 43 H 0.068 0.932 44 H -0.030 1.030 45 H 0.265 0.735 46 H 0.130 0.870 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.114 0.886 50 H 0.091 0.909 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.597 -1.775 9.501 25.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.165 4.165 3 C -0.115 4.115 4 C -0.163 4.163 5 C -0.205 4.205 6 C -0.027 4.027 7 N -0.318 5.318 8 C 0.129 3.871 9 C -0.576 4.576 10 H 0.064 0.936 11 C -0.190 4.190 12 N -0.566 5.566 13 Si 0.780 3.220 14 H -0.178 1.178 15 H -0.202 1.202 16 H -0.214 1.214 17 C 0.278 3.722 18 O -0.477 6.477 19 C -0.138 4.138 20 H 0.169 0.831 21 C -0.162 4.162 22 C -0.088 4.088 23 H 0.177 0.823 24 C -0.227 4.227 25 C 0.226 3.774 26 O -0.363 6.363 27 C -0.165 4.165 28 H 0.121 0.879 29 C -0.134 4.134 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.086 0.914 44 H -0.012 1.012 45 H 0.073 0.927 46 H 0.148 0.852 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.132 0.868 50 H 0.109 0.891 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.511 -2.251 8.805 24.277 hybrid contribution 2.075 0.364 -1.264 2.457 sum -20.437 -1.887 7.541 21.865 Atomic orbital electron populations 1.22059 0.93182 1.03032 1.03480 1.21669 0.98051 0.95779 1.00967 1.21659 0.95187 0.97342 0.97304 1.21692 0.96864 0.97126 1.00648 1.21814 1.00185 0.96826 1.01713 1.22150 0.96509 0.97030 0.87034 1.48019 1.13601 1.34727 1.35436 1.19133 0.78402 0.92301 0.97260 1.21715 0.93166 1.23985 1.18732 0.93617 1.25758 0.95188 0.99036 0.99020 1.70039 0.98752 1.44846 1.42975 0.85654 0.77656 0.79582 0.79079 1.17770 1.20247 1.21355 1.21478 0.91411 0.79677 0.79675 1.90780 1.63698 1.52742 1.40475 1.22969 0.89650 0.98172 1.02974 0.83092 1.23018 0.97894 0.94575 1.00717 1.23696 0.96636 0.97566 0.90874 0.82345 1.23347 0.99308 0.96687 1.03311 1.26163 0.79880 0.86056 0.85271 1.90350 1.25375 1.64748 1.55800 1.24166 0.99742 0.99205 0.93356 0.87854 1.23604 0.90550 0.94492 1.04714 0.90891 0.91507 0.90214 0.95223 0.91447 0.86954 0.91301 0.95044 0.93636 0.90229 0.94668 0.91242 0.86720 0.91417 1.01202 0.92657 0.85243 0.92758 0.91520 0.86822 0.89073 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.32 71.98 0.60 -1.49 16 2 C -0.13 -2.79 4.88 30.59 0.15 -2.64 16 3 C -0.10 -2.33 2.18 -10.79 -0.02 -2.35 16 4 C -0.13 -3.97 4.84 30.59 0.15 -3.82 16 5 C -0.15 -4.78 8.60 71.98 0.62 -4.16 16 6 C 0.09 2.77 4.31 86.38 0.37 3.14 16 7 N -0.59 -24.83 1.91 -826.16 -1.57 -26.40 16 8 C 0.25 13.78 3.57 85.63 0.31 14.09 16 9 C -0.54 -32.14 9.34 25.60 0.24 -31.90 16 10 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 11 C 0.01 0.53 5.46 84.66 0.46 0.99 16 12 N -0.93 -58.23 13.29 21.45 0.28 -57.95 16 13 Si 0.96 47.18 29.54 68.60 2.03 49.21 16 14 H -0.25 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 17 C 0.49 21.01 4.96 87.65 0.43 21.45 16 18 O -0.60 -33.94 13.11 18.12 0.24 -33.70 16 19 C -0.12 -3.17 1.86 -9.98 -0.02 -3.19 16 20 H 0.15 3.18 2.98 -2.39 -0.01 3.17 16 21 C -0.12 -2.43 3.74 32.17 0.12 -2.31 16 22 C -0.07 -1.09 5.25 -7.33 -0.04 -1.12 16 23 H 0.16 1.16 8.14 -2.39 -0.02 1.14 16 24 C -0.19 -5.19 6.10 31.35 0.19 -5.00 16 25 C 0.35 13.26 5.33 30.49 0.16 13.42 16 26 O -0.49 -24.96 16.58 19.70 0.33 -24.64 16 27 C -0.15 -3.98 4.59 -8.23 -0.04 -4.02 16 28 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 29 C -0.10 -1.35 6.45 33.38 0.22 -1.13 16 30 H 0.07 0.82 3.57 -2.38 -0.01 0.81 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.03 0.86 5.39 -2.39 -0.01 0.85 16 34 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 35 H 0.11 1.97 8.10 -2.39 -0.02 1.95 16 36 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 37 H 0.03 1.30 5.37 -2.39 -0.01 1.29 16 38 H 0.04 1.73 5.24 -2.39 -0.01 1.72 16 39 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 2.17 6.90 -2.39 -0.02 2.15 16 42 H 0.12 2.44 2.85 -2.39 -0.01 2.43 16 43 H 0.07 3.60 3.32 -2.39 -0.01 3.59 16 44 H -0.03 -2.03 7.50 -2.39 -0.02 -2.04 16 45 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 46 H 0.13 1.26 6.55 -2.39 -0.02 1.25 16 47 H 0.05 1.44 6.69 -2.39 -0.02 1.42 16 48 H 0.07 2.25 7.84 -2.38 -0.02 2.23 16 49 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 50 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -92.08 363.40 6.14 -85.94 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.94 Total: 17.60 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 3.90 Total: -10.06 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -1.29 Total: -84.35 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: 0.56 Total: -58.34 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -92.08 6.14 -85.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457528126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.815 kcal (2) G-P(sol) polarization free energy of solvation -92.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds